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A metabolic pathway for bile acid dehydroxylation by the gut microbiome 期刊论文
NATURE, 2020
作者:  Zhong, Miao;  Tran, Kevin;  Min, Yimeng;  Wang, Chuanhao;  Wang, Ziyun;  Dinh, Cao-Thang;  De Luna, Phil;  Yu, Zongqian;  Rasouli, Armin Sedighian;  Brodersen, Peter;  Sun, Song;  Voznyy, Oleksandr;  Tan, Chih-Shan;  Askerka, Mikhail;  Che, Fanglin;  Liu, Min;  Seifitokaldani, Ali;  Pang, Yuanjie;  Lo, Shen-Chuan;  Ip, Alexander;  Ulissi, Zachary;  Sargent, Edward H.
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

The biosynthetic pathway that produces the secondary bile acids DCA and LCA in human gut microbes has been fully characterized, engineered into another bacterial host, and used to confer DCA production in germ-free mice-an important proof-of-principle for the engineering of gut microbial pathways.


The gut microbiota synthesize hundreds of molecules, many of which influence host physiology. Among the most abundant metabolites are the secondary bile acids deoxycholic acid (DCA) and lithocholic acid (LCA), which accumulate at concentrations of around 500 mu M and are known to block the growth ofClostridium difficile(1), promote hepatocellular carcinoma(2)and modulate host metabolism via the G-protein-coupled receptor TGR5 (ref.(3)). More broadly, DCA, LCA and their derivatives are major components of the recirculating pool of bile acids(4)  the size and composition of this pool are a target of therapies for primary biliary cholangitis and nonalcoholic steatohepatitis. Nonetheless, despite the clear impact of DCA and LCA on host physiology, an incomplete knowledge of their biosynthetic genes and a lack of genetic tools to enable modification of their native microbial producers limit our ability to modulate secondary bile acid levels in the host. Here we complete the pathway to DCA and LCA by assigning and characterizing enzymes for each of the steps in its reductive arm, revealing a strategy in which the A-B rings of the steroid core are transiently converted into an electron acceptor for two reductive steps carried out by Fe-S flavoenzymes. Using anaerobic in vitro reconstitution, we establish that a set of six enzymes is necessary and sufficient for the eight-step conversion of cholic acid to DCA. We then engineer the pathway intoClostridium sporogenes, conferring production of DCA and LCA on a nonproducing commensal and demonstrating that a microbiome-derived pathway can be expressed and controlled heterologously. These data establish a complete pathway to two central components of the bile acid pool.


  
Evolutionary selection of biofilm-mediated extended phenotypes in Yersinia pestis in response to a fluctuating environment 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Cui, Yujun;  Schmid, Boris, V;  Cao, Hanli;  Dai, Xiang;  Du, Zongmin;  Easterday, W. Ryan;  Fang, Haihong;  Guo, Chenyi;  Huang, Shanqian;  Liu, Wanbing;  Qi, Zhizhen;  Song, Yajun;  Tian, Huaiyu;  Wang, Min;  Wu, Yarong;  Xu, Bing;  Yang, Chao;  Yang, Jing;  Yang, Xianwei;  Zhang, Qingwen;  Jakobsen, Kjetill S.;  Zhang, Yujiang;  Stenseth, Nils Chr;  Yang, Ruifu
收藏  |  浏览/下载:15/0  |  提交时间:2020/05/13
MiR-497 similar to 195 cluster regulates angiogenesis during coupling with osteogenesis by maintaining endothelial Notch and HIF-1 alpha activity 期刊论文
NATURE COMMUNICATIONS, 2017, 8
作者:  Yang, Mi;  Li, Chang-Jun;  Sun, Xi;  Guo, Qi;  Xiao, Ye;  Su, Tian;  Tu, Man-Li;  Peng, Hui;  Lu, Qiong;  Liu, Qing;  He, Hong-Bo;  Jiang, Tie-Jian;  Lei, Min-Xiang;  Wan, Mei;  Cao, Xu;  Luo, Xiang-Hang
收藏  |  浏览/下载:20/0  |  提交时间:2019/11/27
Raman enhancement on ultra-clean graphene quantum dots produced by quasi-equilibrium plasma-enhanced chemical vapor deposition 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Liu, Donghua;  Chen, Xiaosong;  Hu, Yibin;  Sun, Tai;  Song, Zhibo;  Zheng, Yujie;  Cao, Yongbin;  Cai, Zhi;  Cao, Min;  Peng, Lan;  Huang, Yuli;  Du, Lei;  Yang, Wuli;  Chen, Gang;  Wei, Dapeng;  Shen, Andrew Thye;  Wei, Dacheng
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
Enhanced photoelectrical response of thermodynamically epitaxial organic crystals at the two-dimensional limit 期刊论文
NATURE COMMUNICATIONS, 2019, 10
作者:  Cao, Min;  Zhang, Cong;  Cai, Zhi;  Xiao, Chengcheng;  Chen, Xiaosong;  Yi, Kongyang;  Yang, Yingguo;  Lu, Yunhao;  Wei, Dacheng
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
RAP2 mediates mechanoresponses of the Hippo pathway 期刊论文
NATURE, 2018, 560 (7720) : 655-+
作者:  Meng, Zhipeng;  Qiu, Yunjiang;  Lin, Kimberly C.;  Kumar, Aditya;  Placone, Jesse K.;  Fang, Cao;  Wang, Kuei-Chun;  Lu, Shicong;  Pan, Margaret;  Hong, Audrey W.;  Moroishi, Toshiro;  Luo, Min;  Plouffe, Steven W.;  Diao, Yarui;  Ye, Zhen;  Park, Hyun Woo;  Wang, Xiaoqiong;  Yu, Fa-Xing;  Chien, Shu;  Wang, Cun-Yu;  Ren, Bing;  Engler, Adam J.;  Guan, Kun-Liang
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Elevated H3K79 homocysteinylation causes abnormal gene expression during neural development and subsequent neural tube defects 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Zhang, Qin;  Bai, Baoling;  Mei, Xinyu;  Wan, Chunlei;  Cao, Haiyan;  Li, Dan;  Wang, Shan;  Zhang, Min;  Wang, Zhigang;  Wu, Jianxin;  Wang, Hongyan;  Huo, Junsheng;  Ding, Gangqiang;  Zhao, Jianyuan;  Xie, Qiu;  Wang, Li;  Qiu, Zhiyong;  Zhao, Shiming;  Zhang, Ting
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
Intra-specific relatedness, spatial clustering and reduced demographic performance in tropical rainforest trees 期刊论文
ECOLOGY LETTERS, 2018, 21 (8) : 1174-1181
作者:  Shao, Xiaona;  Brown, Calum;  Worthy, Samantha J.;  Liu, Lu;  Cao, Min;  Li, Qiaoming;  Lin, Luxiang;  Swenson, Nathan G.
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09
Density dependence  forest dynamics  forest ecology  rainforest  relatedness  
Hydroxylated Polybrominated Biphenyl Ethers Exert Estrogenic Effects via Nongenomic G Protein-Coupled Estrogen Receptor Mediated Pathways (vol 126, 057005, 2018) 期刊论文
ENVIRONMENTAL HEALTH PERSPECTIVES, 2018, 126 (6)
作者:  Cao, Lin-Ying;  Ren, Xiao-Min;  Yang, Yu;  Wan, Bin;  Guo, Liang-Hong;  Chen, De;  Fan, Yong
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
Hydroxylated Polybrominated Biphenyl Ethers Exert Estrogenic Effects via Non-Genomic G Protein-Coupled Estrogen Receptor Mediated Pathways 期刊论文
ENVIRONMENTAL HEALTH PERSPECTIVES, 2018, 126 (5)
作者:  Cao, Lin-Ying;  Ren, Xiao-Min;  Yang, Yu;  Wan, Bin;  Guo, Liang-Hong;  Chen, De;  Fan, Yong
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09