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Years of the Maritime Continent 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2020, 47 (12)
作者:  Yoneyama, K.;  Zhang, C.
收藏  |  浏览/下载:10/0  |  提交时间:2020/06/01
Indo-Pacific Maritime Continent  YMC  International Field Program  
The first dinosaur egg was soft 期刊论文
NATURE, 2020
作者:  Rodstrom, Karin E. J.;  Kiper, Aytug K.;  Zhang, Wei;  Rinne, Susanne;  Pike, Ashley C. W.;  Goldstein, Matthias;  Conrad, Linus J.;  Delbeck, Martina;  Hahn, Michael G.;  Meier, Heinrich;  Platzk, Magdalena;  Quigley, Andrew;  Speedman, David;  Shrestha, Leela;  Mukhopadhyay, Shubhashish M. M.
收藏  |  浏览/下载:47/0  |  提交时间:2020/07/03

Molecular analyses of newly discovered, embryo-bearing ornithischian and sauropod dinosaur eggs suggest that the ancestral dinosaur egg was soft-shelled, and that hard-shelled eggs evolved independently at least three times in the major dinosaur lineages.


Calcified eggshells protect developing embryos against environmental stress and contribute to reproductive success(1). As modern crocodilians and birds lay hard-shelled eggs, this eggshell type has been inferred for non-avian dinosaurs. Known dinosaur eggshells are characterized by an innermost membrane, an overlying protein matrix containing calcite, and an outermost waxy cuticle(2-7). The calcitic eggshell consists of one or more ultrastructural layers that differ markedly among the three major dinosaur clades, as do the configurations of respiratory pores. So far, only hadrosaurid, a few sauropodomorph and tetanuran eggshells have been discovered  the paucity of the fossil record and the lack of intermediate eggshell types challenge efforts to homologize eggshell structures across all dinosaurs(8-18). Here we present mineralogical, organochemical and ultrastructural evidence for an originally non-biomineralized, soft-shelled nature of exceptionally preserved ornithischianProtoceratopsand basal sauropodomorphMussauruseggs. Statistical evaluation of in situ Raman spectra obtained for a representative set of hard- and soft-shelled, fossil and extant diapsid eggshells clusters the originally organic but secondarily phosphatizedProtoceratopsand the organicMussauruseggshells with soft, non-biomineralized eggshells. Histology corroborates the organic composition of these soft-shelled dinosaur eggs, revealing a stratified arrangement resembling turtle soft eggshell. Through an ancestral-state reconstruction of composition and ultrastructure, we compare eggshells fromProtoceratopsandMussauruswith those from other diapsids, revealing that the first dinosaur egg was soft-shelled. The calcified, hard-shelled dinosaur egg evolved independently at least three times throughout the Mesozoic era, explaining the bias towards eggshells of derived dinosaurs in the fossil record.


  
Mechanical regulation of glycolysis via cytoskeleton architecture 期刊论文
NATURE, 2020, 578 (7796) : 621-+
作者:  Faivre, Emily J.;  McDaniel, Keith F.;  Albert, Daniel H.;  Mantena, Srinivasa R.;  Plotnik, Joshua P.;  Wilcox, Denise;  Zhang, Lu;  Bui, Mai H.;  Sheppard, George S.;  Wang, Le;  Sehgal, Vasudha;  Lin, Xiaoyu;  Huang, Xiaoli;  Lu, Xin;  Uziel, Tamar;  Hessler, Paul;  Lam, Lloyd T.;  Bellin, Richard J.;  Mehta, Gaurav;  Fidanze, Steve;  Pratt, John K.;  Liu, Dachun;  Hasvold, Lisa A.;  Sun, Chaohong;  Panchal, Sanjay C.;  Nicolette, John J.;  Fossey, Stacey L.;  Park, Chang H.;  Longenecker, Kenton;  Bigelow, Lance;  Torrent, Maricel;  Rosenberg, Saul H.;  Kati, Warren M.;  Shen, Yu
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The mechanics of the cellular microenvironment continuously modulates cell functions such as growth, survival, apoptosis, differentiation and morphogenesis via cytoskeletal remodelling and actomyosin contractility(1-3). Although all of these processes consume energy(4,5), it is unknown whether and how cells adapt their metabolic activity to variable mechanical cues. Here we report that the transfer of human bronchial epithelial cells from stiff to soft substrates causes a downregulation of glycolysis via proteasomal degradation of the rate-limiting metabolic enzyme phosphofructokinase (PFK). PFK degradation is triggered by the disassembly of stress fibres, which releases the PFK-targeting E3 ubiquitin ligase tripartite motif (TRIM)-containing protein 21 (TRIM21). Transformed non-small-cell lung cancer cells, which maintain high glycolytic rates regardless of changing environmental mechanics, retain PFK expression by downregulating TRIM21, and by sequestering residual TRIM21 on a stress-fibre subset that is insensitive to substrate stiffness. Our data reveal a mechanism by which glycolysis responds to architectural features of the actomyosin cytoskeleton, thus coupling cell metabolism to the mechanical properties of the surrounding tissue. These processes enable normal cells to tune energy production in variable microenvironments, whereas the resistance of the cytoskeleton in response to mechanical cues enables the persistence of high glycolytic rates in cancer cells despite constant alterations of the tumour tissue.


Glycolysis in normal epithelial cells responds to microenvironmental mechanics via the modulation of actin bundles that sequester the phosphofructokinase-targeting ubiquitin ligase TRIM21, a process superseded by persistent actin bundles in cancer cells.


  
Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids 期刊论文
NATURE, 2020
作者:  Nixon, Christopher C.;  Mavigner, Maud;  Sampey, Gavin C.;  Brooks, Alyssa D.;  Spagnuolo, Rae Ann;  Irlbeck, David M.;  Mattingly, Cameron;  Ho, Phong T.;  Schoof, Nils;  Cammon, Corinne G.;  Tharp, Greg K.;  Kanke, Matthew;  Wang, Zhang;  Cleary, Rachel A.;  Upadhyay, Amit A.;  De, Chandrav;  Wills, Saintedym R.;  Falcinelli, Shane D.;  Galardi, Cristin;  Walum, Hasse;  Schramm, Nathaniel J.;  Deutsch, Jennifer;  Lifson, Jeffrey D.;  Fennessey, Christine M.;  Keele, Brandon F.;  Jean, Sherrie;  Maguire, Sean;  Liao, Baolin;  Browne, Edward P.;  Ferris, Robert G.;  Brehm, Jessica H.;  Favre, David;  Vanderford, Thomas H.;  Bosinger, Steven E.;  Jones, Corbin D.;  Routy, Jean-Pierre;  Archin, Nancie M.;  Margolis, David M.;  Wahl, Angela;  Dunham, Richard M.;  Silvestri, Guido;  Chahroudi, Ann;  Garcia, J. Victor
收藏  |  浏览/下载:34/0  |  提交时间:2020/07/03

Single-cell RNA sequencing and spatial transcriptomics reveal that the somitogenesis clock is active in mouse gastruloids, which can be induced to generate somites with the correct rostral-caudal patterning.


Gastruloids are three-dimensional aggregates of embryonic stem cells that display key features of mammalian development after implantation, including germ-layer specification and axial organization(1-3). To date, the expression pattern of only a small number of genes in gastruloids has been explored with microscopy, and the extent to which genome-wide expression patterns in gastruloids mimic those in embryos is unclear. Here we compare mouse gastruloids with mouse embryos using single-cell RNA sequencing and spatial transcriptomics. We identify various embryonic cell types that were not previously known to be present in gastruloids, and show that key regulators of somitogenesis are expressed similarly between embryos and gastruloids. Using live imaging, we show that the somitogenesis clock is active in gastruloids and has dynamics that resemble those in vivo. Because gastruloids can be grown in large quantities, we performed a small screen that revealed how reduced FGF signalling induces a short-tail phenotype in embryos. Finally, we demonstrate that embedding in Matrigel induces gastruloids to generate somites with the correct rostral-caudal patterning, which appear sequentially in an anterior-to-posterior direction over time. This study thus shows the power of gastruloids as a model system for exploring development and somitogenesis in vitro in a high-throughput manner.


  
Divergent consensuses on Arctic amplification influence on midlatitude severe winter weather 期刊论文
NATURE CLIMATE CHANGE, 2020, 10 (1) : 20-+
作者:  Cohen, J.;  Zhang, X.;  Francis, J.;  Jung, T.;  Kwok, R.;  Overland, J.;  Ballinger, T. J.;  Bhatt, U. S.;  Chen, H. W.;  Coumou, D.;  Feldstein, S.;  Gu, H.;  Handorf, D.;  Henderson, G.;  Ionita, M.;  Kretschmer, M.;  Laliberte, F.;  Lee, S.;  Linderholm, H. W.;  Maslowski, W.;  Peings, Y.;  Pfeiffer, K.;  Rigor, I.;  Semmler, T.;  Stroeve, J.;  Taylor, P. C.;  Vavrus, S.;  Vihma, T.;  Wang, S.;  Wendisch, M.;  Wu, Y.;  Yoon, J.
收藏  |  浏览/下载:19/0  |  提交时间:2020/07/02
The Role of Collapsed Bank Soil on Tidal Channel Evolution: A Process-Based Model Involving Bank Collapse and Sediment Dynamics 期刊论文
WATER RESOURCES RESEARCH, 2019
作者:  Zhao, K.;  Gong, Z.;  Xu, F.;  Zhou, Z.;  Zhang, C. K.;  Perillo, G. M. E.;  Coco, G.
收藏  |  浏览/下载:4/0  |  提交时间:2020/02/16
tidal channels  bank collapse  numerical modeling  collapsed bank soil  
A high-performance oxygen evolution catalyst in neutral-pH for sunlight-driven CO2 reduction 期刊论文
NATURE COMMUNICATIONS, 2019, 10
作者:  Zhou, Li Qin;  Ling, Chen;  Zhou, Hui;  Wang, Xiang;  Liao, Joseph;  Reddy, Gunugunuri K.;  Deng, Liangzi;  Peck, Torin C.;  Zhang, Ruigang;  Whittingham, M. Stanley;  Wang, Chongmin;  Chu, Ching-Wu;  Yao, Yan;  Jia, Hongfei
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
The formation of human populations in South and Central Asia 期刊论文
SCIENCE, 2019, 365 (6457) : 999-+
作者:  Narasimhan, Vagheesh M.;  Patterson, Nick;  Moorjani, Priya;  Rohland, Nadin;  Bernardos, Rebecca;  Mallick, Swapan;  Lazaridis, Losif;  Nakatsuka, Nathan;  Olalde, Iffigo;  Lipson, Mark;  Kim, Alexander M.;  Olivieri, Luca M.;  Coppa, Alfredo;  Vidale, Massimo;  Mallory, James;  Moiseyev, Vyacheslav;  Kitov, Egor;  Monge, Janet;  Adamski, Nicole;  Alexi, Neel;  Broomandkhoshbacht, Nasreen;  Candilio, Francesca;  Callan, Kimberly;  Cheronet, Olivia;  Culleton, Brendan J.;  Ferry, Matthew;  Fernandes, Daniel;  Freilih, Suzanne;  Gamarra, Beatriz;  Gaudio, Daniel;  Hajdinjak, Mateja;  Harney, Eadaoin;  Harper, Thomas K.;  Keatin, Denise;  Lawson, Ann Marie;  Mah, Matthew;  Mandl, Kirsten;  Michel, Megan;  Novak, Mario;  Oppenheimer, Jonas;  Rai, Niraj;  Sirak, Kendra;  Slon, Viviane;  Stewardson, Kristin;  Zalzala, Fatma;  Zhang, Zhao;  Akhatov, Gaziz;  Bagashev, Anatoly N.;  Bagnera, Alessandra;  Baitanayev, Bauryzhan;  Bendezu-Sarmiento, Julio;  Bissembaev, Arman A.;  Bonora, Gian Luca;  Chargynov, Temirlan T.;  Chikisheva, Tatiana;  Dashkovskiy, Petr K.;  Derevianko, Anatoly;  Dobes, Miroslav;  Douka, Katerina;  Dubova, Nadezhda;  Duisengali, Meiram N.;  Enshin, Dmitry;  Epimakhov, Andrey;  Fribus, Alexey V.;  Fuller, Dorian;  Goryachev, Alexander;  Gromov, Andrey;  Grushin, Sergey P.;  Hanks, Bryan;  Judd, Margaret;  Kazizov, Erlan;  Khokhlov, Aleksander;  Krygin, Aleksander P.;  Kupriyanova, Elena;  Kuznetsov, Pavel;  Luiseli, Donata;  Maksudov, Farhod;  Mamedov, Asian M.;  Mamirov, Talgat B.;  Meiklejohn, Christopher;  Merrett, Deborah C.;  Micheli, Roberto;  Mochalov, Oleg;  Mustafokulov, Samariddin;  Nayak, Ayushi;  Pettener, Davide;  Potts, Richard;  Razhev, Dmitry;  Rykun, Marina;  Sarno, Stefania;  Savenkova, Tatyana M.;  Sikhymbaeva, Kulyan;  Slepchenko, Sergey M.;  Soltobaev, Oroz A.;  Stepanova, Nadezhda;  Svyatko, Svetlana;  Tabaldiev, Kubatbek;  Teschler-Nicola, Maria;  Tishkin, Alexey A.;  Tkachev, Vitaly V.;  Vasilyev, Sergey;  Veleminsky, Petr;  Voyakin, Dmitriy;  Yermolayeva, Antonina;  Zahir, Muhammad;  Zubkov, Valery S.;  Zubova, Alisa;  Shinde, Vasant S.;  Lalueza-Fox, Carles;  Meyer, Matthias;  Anthony, David;  Boivin, Nicole;  Thangaraj, Kumnarasamy;  Kennett, Douglas J.;  Frachetti, Michael;  Pinhasi, Ron;  Reich, David
收藏  |  浏览/下载:22/0  |  提交时间:2019/11/27
The Geometry of an Electron Scale Magnetic Cavity in the Plasma Sheet 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (16) : 9308-9317
作者:  Liu, H.;  Zong, Q-G;  Zhang, H.;  Sun, W. J.;  Zhou, X-Z;  Gershman, Daniel J.;  Shi, C.;  Zhang, K.;  Le, Guan;  Pollock, C.
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
Mitochondrial mutations drive prostate cancer aggression 期刊论文
NATURE COMMUNICATIONS, 2017, 8
作者:  Hopkins, Julia F.;  Sabelnykova, Veronica Y.;  Weischenfeldt, Joachim;  Simon, Ronald;  Aguiar, Jennifer A.;  Alkallas, Rached;  Heisler, Lawrence E.;  Zhang, Junyan;  Watson, John D.;  Chua, Melvin L. K.;  Fraser, Michael;  Favero, Francesco;  Lawerenz, Chris;  Plass, Christoph;  Sauter, Guido;  McPherson, John D.;  van der Kwast, Theodorus;  Korbel, Jan;  Schlomm, Thorsten;  Bristow, Robert G.;  Boutros, Paul C.
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27