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Host genetics influence the gut microbiome 期刊论文
Science, 2021
作者:  Liliana Cortes-Ortiz;  Katherine R. Amato
收藏  |  浏览/下载:6/0  |  提交时间:2021/07/27
Diversity and functional landscapes in the microbiota of animals in the wild 期刊论文
Science, 2021
作者:  Doron Levin;  Neta Raab;  Yishay Pinto;  Daphna Rothschild;  Gal Zanir;  Anastasia Godneva;  Nadav Mellul;  David Futorian;  Doran Gal;  Sigal Leviatan;  David Zeevi;  Ido Bachelet;  Eran Segal
收藏  |  浏览/下载:9/0  |  提交时间:2021/04/20
The gut microbiomes of 180 species 期刊论文
Science, 2021
作者:  Abigail L. Lind;  Katherine S. Pollard
收藏  |  浏览/下载:13/0  |  提交时间:2021/04/20
Legume–microbiome interactions unlock mineral nutrients in regrowing tropical forests 期刊论文
Proceedings of the National Academy of Sciences, 2021
作者:  Dimitar Z. Epihov;  Kristin Saltonstall;  Sarah A. Batterman;  Lars O. Hedin;  Jefferson S. Hall;  Michiel van Breugel;  Jonathan R. Leake;  David J. Beerling
收藏  |  浏览/下载:10/0  |  提交时间:2021/03/17
A genome to celebrate 期刊论文
Science, 2021
作者:  Claire M. Fraser
收藏  |  浏览/下载:7/0  |  提交时间:2021/02/17
Dynamic genome evolution and complex virocell metabolism of globally-distributed giant viruses 期刊论文
Nature, 2020
作者:  Mohammad Moniruzzaman;  Carolina A. Martinez-Gutierrez;  Alaina R. Weinheimer;  Frank O. Aylward
收藏  |  浏览/下载:5/0  |  提交时间:2020/05/13
Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Sun, Jian;  39;Souza, Alaric W.
收藏  |  浏览/下载:2/0  |  提交时间:2020/05/13
Giant virus diversity and host interactions through global metagenomics 期刊论文
NATURE, 2020: 1-+
作者:  Su, Jie;  Morgani, Sophie M.;  David, Charles J.;  Wang, Qiong;  Er, Ekrem Emrah;  Huang, Yun-Han;  Basnet, Harihar;  Zou, Yilong;  Shu, Weiping;  Soni, Rajesh K.;  Hendrickson, Ronald C.;  Hadjantonakis, Anna-Katerina;  Massague, Joan
收藏  |  浏览/下载:20/0  |  提交时间:2020/07/03

Analysis of metagenomics data revealed that large and giant viruses are globally widely distributed and are associated with most major eukaryotic lineages.


Our current knowledge about nucleocytoplasmic large DNA viruses (NCLDVs) is largely derived from viral isolates that are co-cultivated with protists and algae. Here we reconstructed 2,074 NCLDV genomes from sampling sites across the globe by building on the rapidly increasing amount of publicly available metagenome data. This led to an 11-fold increase in phylogenetic diversity and a parallel 10-fold expansion in functional diversity. Analysis of 58,023 major capsid proteins from large and giant viruses using metagenomic data revealed the global distribution patterns and cosmopolitan nature of these viruses. The discovered viral genomes encoded a wide range of proteins with putative roles in photosynthesis and diverse substrate transport processes, indicating that host reprogramming is probably a common strategy in the NCLDVs. Furthermore, inferences of horizontal gene transfer connected viral lineages to diverse eukaryotic hosts. We anticipate that the global diversity of NCLDVs that we describe here will establish giant viruses-which are associated with most major eukaryotic lineages-as important players in ecosystems across Earth'  s biomes.


  
The gut microbiome in atherosclerotic cardiovascular disease 期刊论文
NATURE COMMUNICATIONS, 2017, 8
作者:  Jie, Zhuye;  Xia, Huihua;  Zhong, Shi-Long;  Feng, Qiang;  Li, Shenghui;  Liang, Suisha;  Zhong, Huanzi;  Liu, Zhipeng;  Gao, Yuan;  Zhao, Hui;  Zhang, Dongya;  Su, Zheng;  Fang, Zhiwei;  Lan, Zhou;  Li, Junhua;  Xiao, Liang;  Li, Jun;  Li, Ruijun;  Li, Xiaoping;  Li, Fei;  Ren, Huahui;  Huang, Yan;  Peng, Yangqing;  Li, Guanglei;  Wen, Bo;  Dong, Bo;  Chen, Ji-Yan;  Geng, Qing-Shan;  Zhang, Zhi-Wei;  Yang, Huanming;  Wang, Jian;  Wang, Jun;  Zhang, Xuan;  Madsen, Lise;  Brix, Susanne;  Ning, Guang;  Xu, Xun;  Liu, Xin;  Hou, Yong;  Jia, Huijue;  He, Kunlun;  Kristiansen, Karsten
收藏  |  浏览/下载:16/0  |  提交时间:2019/11/27
Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps 期刊论文
NATURE COMMUNICATIONS, 2019, 10
作者:  Dilthey, Alexander T.;  Jain, Chirag;  Koren, Sergey;  Phillippy, Adam M.
收藏  |  浏览/下载:1/0  |  提交时间:2019/11/27