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Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms 期刊论文
Science, 2020
作者:  David E. Gordon;  Joseph Hiatt;  Mehdi Bouhaddou;  Veronica V. Rezelj;  Svenja Ulferts;  Hannes Braberg;  Alexander S. Jureka;  Kirsten Obernier;  Jeffrey Z. Guo;  Jyoti Batra;  Robyn M. Kaake;  Andrew R. Weckstein;  Tristan W. Owens;  Meghna Gupta;  Sergei Pourmal;  Erron W. Titus;  Merve Cakir;  Margaret Soucheray;  Michael McGregor;  Zeynep Cakir;  Gwendolyn Jang;  Matthew J. O’Meara;  Tia A. Tummino;  Ziyang Zhang;  Helene Foussard;  Ajda Rojc;  Yuan Zhou;  Dmitry Kuchenov;  Ruth Hüttenhain;  Jiewei Xu;  Manon Eckhardt;  Danielle L. Swaney;  Jacqueline M. Fabius;  Manisha Ummadi;  Beril Tutuncuoglu;  Ujjwal Rathore;  Maya Modak;  Paige Haas;  Kelsey M. Haas;  Zun Zar Chi Naing;  Ernst H. Pulido;  Ying Shi;  Inigo Barrio-Hernandez;  Danish Memon;  Eirini Petsalaki;  Alistair Dunham;  Miguel Correa Marrero;  David Burke;  Cassandra Koh;  Thomas Vallet;  Jesus A. Silvas;  Caleigh M. Azumaya;  Christian Billesbølle;  Axel F. Brilot;  Melody G. Campbell;  Amy Diallo;  Miles Sasha Dickinson;  Devan Diwanji;  Nadia Herrera;  Nick Hoppe;  Huong T. Kratochvil;  Yanxin Liu;  Gregory E. Merz;  Michelle Moritz;  Henry C. Nguyen;  Carlos Nowotny;  Cristina Puchades;  Alexandrea N. Rizo;  Ursula Schulze-Gahmen;  Amber M. Smith;  Ming Sun;  Iris D. Young;  Jianhua Zhao;  Daniel Asarnow;  Justin Biel;  Alisa Bowen;  Julian R. Braxton;  Jen Chen;  Cynthia M. Chio;  Un Seng Chio;  Ishan Deshpande;  Loan Doan;  Bryan Faust;  Sebastian Flores;  Mingliang Jin;  Kate Kim;  Victor L. Lam;  Fei Li;  Junrui Li;  Yen-Li Li;  Yang Li;  Xi Liu;  Megan Lo;  Kyle E. Lopez;  Arthur A. Melo;  Frank R. Moss;  Phuong Nguyen;  Joana Paulino;  Komal Ishwar Pawar;  Jessica K. Peters;  Thomas H. Pospiech;  Maliheh Safari;  Smriti Sangwan;  Kaitlin Schaefer;  Paul V. Thomas;  Aye C. Thwin;  Raphael Trenker;  Eric Tse;  Tsz Kin Martin Tsui;  Feng Wang;  Natalie Whitis;  Zanlin Yu;  Kaihua Zhang;  Yang Zhang;  Fengbo Zhou;  Daniel Saltzberg;  QCRG Structural Biology Consortium12†;  Anthony J. Hodder;  Amber S. Shun-Shion;  Daniel M. Williams;  Kris M. White;  Romel Rosales;  Thomas Kehrer;  Lisa Miorin;  Elena Moreno;  Arvind H. Patel;  Suzannah Rihn;  Mir M. Khalid;  Albert Vallejo-Gracia;  Parinaz Fozouni;  Camille R. Simoneau;  Theodore L. Roth;  David Wu;  Mohd Anisul Karim;  Maya Ghoussaini;  Ian Dunham;  Francesco Berardi;  Sebastian Weigang;  Maxime Chazal;  Jisoo Park;  James Logue;  Marisa McGrath;  Stuart Weston;  Robert Haupt;  C. James Hastie;  Matthew Elliott;  Fiona Brown;  Kerry A. Burness;  Elaine Reid;  Mark Dorward;  Clare Johnson;  Stuart G. Wilkinson;  Anna Geyer;  Daniel M. Giesel;  Carla Baillie;  Samantha Raggett;  Hannah Leech;  Rachel Toth;  Nicola Goodman;  Kathleen C. Keough;  Abigail L. Lind;  Zoonomia Consortium‡;  Reyna J. Klesh;  Kafi R. Hemphill;  Jared Carlson-Stevermer;  Jennifer Oki;  Kevin Holden;  Travis Maures;  Katherine S. Pollard;  Andrej Sali;  David A. Agard;  Yifan Cheng;  James S. Fraser;  Adam Frost;  Natalia Jura;  Tanja Kortemme;  Aashish Manglik;  Daniel R. Southworth;  Robert M. Stroud;  Dario R. Alessi;  Paul Davies;  Matthew B. Frieman;  Trey Ideker;  Carmen Abate;  Nolwenn Jouvenet;  Georg Kochs;  Brian Shoichet;  Melanie Ott;  Massimo Palmarini;  Kevan M. Shokat;  Adolfo García-Sastre;  Jeremy A. Rassen;  Robert Grosse;  Oren S. Rosenberg;  Kliment A. Verba;  Christopher F. Basler;  Marco Vignuzzi;  Andrew A. Peden;  Pedro Beltrao;  Nevan J. Krogan
收藏  |  浏览/下载:25/0  |  提交时间:2020/12/07
Global quieting of high-frequency seismic noise due to COVID-19 pandemic lockdown measures 期刊论文
Science, 2020
作者:  Thomas Lecocq;  Stephen P. Hicks;  Koen Van Noten;  Kasper van Wijk;  Paula Koelemeijer;  Raphael S. M. De Plaen;  Frédérick Massin;  Gregor Hillers;  Robert E. Anthony;  Maria-Theresia Apoloner;  Mario Arroyo-Solórzano;  Jelle D. Assink;  Pinar Büyükakpınar;  Andrea Cannata;  Flavio Cannavo;  Sebastian Carrasco;  Corentin Caudron;  Esteban J. Chaves;  David G. Cornwell;  David Craig;  Olivier F. C. den Ouden;  Jordi Diaz;  Stefanie Donner;  Christos P. Evangelidis;  Läslo Evers;  Benoit Fauville;  Gonzalo A. Fernandez;  Dimitrios Giannopoulos;  Steven J. Gibbons;  Társilo Girona;  Bogdan Grecu;  Marc Grunberg;  György Hetényi;  Anna Horleston;  Adolfo Inza;  Jessica C. E. Irving;  Mohammadreza Jamalreyhani;  Alan Kafka;  Mathijs R. Koymans;  Celeste R. Labedz;  Eric Larose;  Nathaniel J. Lindsey;  Mika McKinnon;  Tobias Megies;  Meghan S. Miller;  William Minarik;  Louis Moresi;  Víctor H. Márquez-Ramírez;  Martin Möllhoff;  Ian M. Nesbitt;  Shankho Niyogi;  Javier Ojeda;  Adrien Oth;  Simon Proud;  Jay Pulli;  Lise Retailleau;  Annukka E. Rintamäki;  Claudio Satriano;  Martha K. Savage;  Shahar Shani-Kadmiel;  Reinoud Sleeman;  Efthimios Sokos;  Klaus Stammler;  Alexander E. Stott;  Shiba Subedi;  Mathilde B. Sørensen;  Taka'aki Taira;  Mar Tapia;  Fatih Turhan;  Ben van der Pluijm;  Mark Vanstone;  Jerome Vergne;  Tommi A. T. Vuorinen;  Tristram Warren;  Joachim Wassermann;  Han Xiao
收藏  |  浏览/下载:16/0  |  提交时间:2020/09/14
Live-animal imaging of native haematopoietic stem and progenitor cells 期刊论文
NATURE, 2020, 578 (7794) : 278-+
作者:  Gerstung, Moritz;  Jolly, Clemency;  Leshchiner, Ignaty;  Dentro, Stefan C.;  Gonzalez, Santiago;  Rosebrock, Daniel;  Mitchell, Thomas J.;  Rubanova, Yulia;  Anur, Pavana;  Yu, Kaixian;  Tarabichi, Maxime;  Deshwar, Amit;  Wintersinger, Jeff;  Kleinheinz, Kortine;  Vazquez-Garcia, Ignacio;  Haase, Kerstin;  Jerman, Lara;  Sengupta, Subhajit;  Macintyre, Geoff;  Malikic, Salem;  Donmez, Nilgun;  Livitz, Dimitri G.;  Cmero, Marek;  Demeulemeester, Jonas;  Schumacher, Steven;  Fan, Yu;  Yao, Xiaotong;  Lee, Juhee;  Schlesner, Matthias;  Boutros, Paul C.;  Bowtell, David D.;  Zhu, Hongtu;  Getz, Gad;  Imielinski, Marcin;  Beroukhim, Rameen;  Sahinalp, S. Cenk;  Ji, Yuan;  Peifer, Martin;  Markowetz, Florian;  Mustonen, Ville;  Yuan, Ke;  Wang, Wenyi;  Morris, Quaid D.;  Spellman, Paul T.;  Wedge, David C.;  Van Loo, Peter;  Deshwar, Amit G.;  Adams, David J.;  Campbell, Peter J.;  Cao, Shaolong;  Christie, Elizabeth L.;  Cun, Yupeng;  Dawson, Kevin J.;  Drews, Ruben M.;  Eils, Roland;  Fittall, Matthew;  Garsed, Dale W.;  Ha, Gavin;  Lee-Six, Henry;  Martincorena, Inigo;  Oesper, Layla;  Peto, Myron;  Raphael, Benjamin J.;  Salcedo, Adriana;  Shi, Ruian;  Shin, Seung Jun;  Spiro, Oliver;  Stein, Lincoln D.;  Vembu, Shankar;  Wheeler, David A.;  Yang, Tsun-Po
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The biology of haematopoietic stem cells (HSCs) has predominantly been studied under transplantation conditions(1,2). It has been particularly challenging to study dynamic HSC behaviour, given that the visualization of HSCs in the native niche in live animals has not, to our knowledge, been achieved. Here we describe a dual genetic strategy in mice that restricts reporter labelling to a subset of the most quiescent long-term HSCs (LT-HSCs) and that is compatible with current intravital imaging approaches in the calvarial bone marrow(3-5). We show that this subset of LT-HSCs resides close to both sinusoidal blood vessels and the endosteal surface. By contrast, multipotent progenitor cells (MPPs) show greater variation in distance from the endosteum and are more likely to be associated with transition zone vessels. LT-HSCs are not found in bone marrow niches with the deepest hypoxia and instead are found in hypoxic environments similar to those of MPPs. In vivo time-lapse imaging revealed that LT-HSCs at steady-state show limited motility. Activated LT-HSCs show heterogeneous responses, with some cells becoming highly motile and a fraction of HSCs expanding clonally within spatially restricted domains. These domains have defined characteristics, as HSC expansion is found almost exclusively in a subset of bone marrow cavities with bone-remodelling activity. By contrast, cavities with low bone-resorbing activity do not harbour expanding HSCs. These findings point to previously unknown heterogeneity within the bone marrow microenvironment, imposed by the stages of bone turnover. Our approach enables the direct visualization of HSC behaviours and dissection of heterogeneity in HSC niches.


A dual genetic strategy enables the labelling and in vivo imaging of native long-term haematopoietic stem cells in the mouse calvarial bone marrow.


  
Twenty-five years of the Northwest Forest Plan: what have we learned? 期刊论文
FRONTIERS IN ECOLOGY AND THE ENVIRONMENT, 2019, 17 (9) : 511-520
作者:  Spies, Thomas A.;  Long, Jonathan W.;  Charnley, Susan;  Hessburg, Paul F.;  Marcot, Bruce G.;  Reeves, Gordon H.;  Lesmeister, Damon B.;  Reilly, Matthew J.;  Cerveny, Lee K.;  Stine, Peter A.;  Raphael, Martin G.
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
Site occupancy and reproductive dynamics of California spotted owls in a mixed-ownership landscape 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 437: 188-200
作者:  Hobart, Brendan K.;  Roberts, Kevin N.;  Dotters, Brian P.;  Berigan, William J.;  Whitmore, Sheila A.;  Raphael, Martin G.;  Keane, John J.;  Gutierrez, R. J.;  Peery, M. Zachariah
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09
California spotted owl  Mixed-ownership landscapes  Multistate  Occupancy modeling  Private land  Public land  Sierra Nevada  
Resource selection by GPS-tagged California spotted owls in mixed-ownership forests 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 433: 295-304
作者:  Atuo, Fidelis A.;  Roberts, Kevin;  Whitmore, Sheila;  Dotters, Brian P.;  Raphael, Martin G.;  Sawyer, Sarah C.;  Keane, John J.;  Gutierrez, R. J.;  Peery, M. Zachariah
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
California spotted owl  Home range size  Mixed-ownership landscapes  Resource selection analysis  Step selection analysis  Sierra Nevada  Strix occidentalis occidentalis