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Replenishment of near-surface water ice by impacts into Ceres’ volatile-rich crust: Observations by Dawn’s Gamma Ray and Neutron Detector 期刊论文
Geophysical Research Letters, 2021
作者:  T. H. Prettyman;  N. Yamashita;  M. E. Landis;  J. C. Castillo-Rogez;  N. Schö;  rghofer;  C. M. Pieters;  H. G. Sizemore;  H. Hiesinger;  S. Marchi;  H. Y. McSween;  R. S. Park;  M. J. Toplis;  C. A. Raymond;  C. T. Russell
收藏  |  浏览/下载:10/0  |  提交时间:2021/07/27
Analysis of multispectral imaging with the AstroPath platform informs efficacy of PD-1 blockade 期刊论文
Science, 2021
作者:  Sneha Berry;  Nicolas A. Giraldo;  Benjamin F. Green;  Tricia R. Cottrell;  Julie E. Stein;  Elizabeth L. Engle;  Haiying Xu;  Aleksandra Ogurtsova;  Charles Roberts;  Daphne Wang;  Peter Nguyen;  Qingfeng Zhu;  Sigfredo Soto-Diaz;  Jose Loyola;  Inbal B. Sander;  Pok Fai Wong;  Shlomit Jessel;  Joshua Doyle;  Danielle Signer;  Richard Wilton;  Jeffrey S. Roskes;  Margaret Eminizer;  Seyoun Park;  Joel C. Sunshine;  Elizabeth M. Jaffee;  Alexander Baras;  Angelo M. De Marzo;  Suzanne L. Topalian;  Harriet Kluger;  Leslie Cope;  Evan J. Lipson;  Ludmila Danilova;  Robert A. Anders;  David L. Rimm;  Drew M. Pardoll;  Alexander S. Szalay;  Janis M. Taube
收藏  |  浏览/下载:11/0  |  提交时间:2021/06/15
Preventing Engrailed-1 activation in fibroblasts yields wound regeneration without scarring 期刊论文
Science, 2021
作者:  Shamik Mascharak;  Heather E. desJardins-Park;  Michael F. Davitt;  Michelle Griffin;  Mimi R. Borrelli;  Alessandra L. Moore;  Kellen Chen;  Bryan Duoto;  Malini Chinta;  Deshka S. Foster;  Abra H. Shen;  Michael Januszyk;  Sun Hyung Kwon;  Gerlinde Wernig;  Derrick C. Wan;  H. Peter Lorenz;  Geoffrey C. Gurtner;  Michael T. Longaker
收藏  |  浏览/下载:15/0  |  提交时间:2021/04/29
Predictable variations of the carbon sinks and atmospheric CO2 growth in a multi‐model framework 期刊论文
Geophysical Research Letters, 2020
作者:  T. Ilyina;  H. Li;  A. Spring;  W. A. Mü;  ller;  L. Bopp;  M. O. Chikamoto;  G. Danabasoglu;  M. Dobrynin;  J. Dunne;  F. Fransner;  P. Friedlingstein;  W. Lee;  N. S. Lovenduski;  W.J. Merryfield;  J. Mignot;  J.Y. Park;  R. Sé;  ;  rian;  R. Sospedra‐;  Alfonso;  M. Watanabe;  S. Yeager
收藏  |  浏览/下载:10/0  |  提交时间:2021/01/22
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms 期刊论文
Science, 2020
作者:  David E. Gordon;  Joseph Hiatt;  Mehdi Bouhaddou;  Veronica V. Rezelj;  Svenja Ulferts;  Hannes Braberg;  Alexander S. Jureka;  Kirsten Obernier;  Jeffrey Z. Guo;  Jyoti Batra;  Robyn M. Kaake;  Andrew R. Weckstein;  Tristan W. Owens;  Meghna Gupta;  Sergei Pourmal;  Erron W. Titus;  Merve Cakir;  Margaret Soucheray;  Michael McGregor;  Zeynep Cakir;  Gwendolyn Jang;  Matthew J. O’Meara;  Tia A. Tummino;  Ziyang Zhang;  Helene Foussard;  Ajda Rojc;  Yuan Zhou;  Dmitry Kuchenov;  Ruth Hüttenhain;  Jiewei Xu;  Manon Eckhardt;  Danielle L. Swaney;  Jacqueline M. Fabius;  Manisha Ummadi;  Beril Tutuncuoglu;  Ujjwal Rathore;  Maya Modak;  Paige Haas;  Kelsey M. Haas;  Zun Zar Chi Naing;  Ernst H. Pulido;  Ying Shi;  Inigo Barrio-Hernandez;  Danish Memon;  Eirini Petsalaki;  Alistair Dunham;  Miguel Correa Marrero;  David Burke;  Cassandra Koh;  Thomas Vallet;  Jesus A. Silvas;  Caleigh M. Azumaya;  Christian Billesbølle;  Axel F. Brilot;  Melody G. Campbell;  Amy Diallo;  Miles Sasha Dickinson;  Devan Diwanji;  Nadia Herrera;  Nick Hoppe;  Huong T. Kratochvil;  Yanxin Liu;  Gregory E. Merz;  Michelle Moritz;  Henry C. Nguyen;  Carlos Nowotny;  Cristina Puchades;  Alexandrea N. Rizo;  Ursula Schulze-Gahmen;  Amber M. Smith;  Ming Sun;  Iris D. Young;  Jianhua Zhao;  Daniel Asarnow;  Justin Biel;  Alisa Bowen;  Julian R. Braxton;  Jen Chen;  Cynthia M. Chio;  Un Seng Chio;  Ishan Deshpande;  Loan Doan;  Bryan Faust;  Sebastian Flores;  Mingliang Jin;  Kate Kim;  Victor L. Lam;  Fei Li;  Junrui Li;  Yen-Li Li;  Yang Li;  Xi Liu;  Megan Lo;  Kyle E. Lopez;  Arthur A. Melo;  Frank R. Moss;  Phuong Nguyen;  Joana Paulino;  Komal Ishwar Pawar;  Jessica K. Peters;  Thomas H. Pospiech;  Maliheh Safari;  Smriti Sangwan;  Kaitlin Schaefer;  Paul V. Thomas;  Aye C. Thwin;  Raphael Trenker;  Eric Tse;  Tsz Kin Martin Tsui;  Feng Wang;  Natalie Whitis;  Zanlin Yu;  Kaihua Zhang;  Yang Zhang;  Fengbo Zhou;  Daniel Saltzberg;  QCRG Structural Biology Consortium12†;  Anthony J. Hodder;  Amber S. Shun-Shion;  Daniel M. Williams;  Kris M. White;  Romel Rosales;  Thomas Kehrer;  Lisa Miorin;  Elena Moreno;  Arvind H. Patel;  Suzannah Rihn;  Mir M. Khalid;  Albert Vallejo-Gracia;  Parinaz Fozouni;  Camille R. Simoneau;  Theodore L. Roth;  David Wu;  Mohd Anisul Karim;  Maya Ghoussaini;  Ian Dunham;  Francesco Berardi;  Sebastian Weigang;  Maxime Chazal;  Jisoo Park;  James Logue;  Marisa McGrath;  Stuart Weston;  Robert Haupt;  C. James Hastie;  Matthew Elliott;  Fiona Brown;  Kerry A. Burness;  Elaine Reid;  Mark Dorward;  Clare Johnson;  Stuart G. Wilkinson;  Anna Geyer;  Daniel M. Giesel;  Carla Baillie;  Samantha Raggett;  Hannah Leech;  Rachel Toth;  Nicola Goodman;  Kathleen C. Keough;  Abigail L. Lind;  Zoonomia Consortium‡;  Reyna J. Klesh;  Kafi R. Hemphill;  Jared Carlson-Stevermer;  Jennifer Oki;  Kevin Holden;  Travis Maures;  Katherine S. Pollard;  Andrej Sali;  David A. Agard;  Yifan Cheng;  James S. Fraser;  Adam Frost;  Natalia Jura;  Tanja Kortemme;  Aashish Manglik;  Daniel R. Southworth;  Robert M. Stroud;  Dario R. Alessi;  Paul Davies;  Matthew B. Frieman;  Trey Ideker;  Carmen Abate;  Nolwenn Jouvenet;  Georg Kochs;  Brian Shoichet;  Melanie Ott;  Massimo Palmarini;  Kevan M. Shokat;  Adolfo García-Sastre;  Jeremy A. Rassen;  Robert Grosse;  Oren S. Rosenberg;  Kliment A. Verba;  Christopher F. Basler;  Marco Vignuzzi;  Andrew A. Peden;  Pedro Beltrao;  Nevan J. Krogan
收藏  |  浏览/下载:24/0  |  提交时间:2020/12/07
Transcriptomic signatures across human tissues identify functional rare genetic variation 期刊论文
Science, 2020
作者:  Nicole M. Ferraro;  Benjamin J. Strober;  Jonah Einson;  Nathan S. Abell;  Francois Aguet;  Alvaro N. Barbeira;  Margot Brandt;  Maja Bucan;  Stephane E. Castel;  Joe R. Davis;  Emily Greenwald;  Gaelen T. Hess;  Austin T. Hilliard;  Rachel L. Kember;  Bence Kotis;  YoSon Park;  Gina Peloso;  Shweta Ramdas;  Alexandra J. Scott;  Craig Smail;  Emily K. Tsang;  Seyedeh M. Zekavat;  Marcello Ziosi;  Aradhana;  TOPMed Lipids Working Group;  Kristin G. Ardlie;  Themistocles L. Assimes;  Michael C. Bassik;  Christopher D. Brown;  Adolfo Correa;  Ira Hall;  Hae Kyung Im;  Xin Li;  Pradeep Natarajan;  GTEx Consortium;  Tuuli Lappalainen;  Pejman Mohammadi;  Stephen B. Montgomery;  Alexis Battle
收藏  |  浏览/下载:11/0  |  提交时间:2020/09/14
Six hundred years of South American tree rings reveal an increase in severe hydroclimatic events since mid-20th century 期刊论文
Proceedings of the National Academy of Science, 2020
作者:  Mariano S. Morales;  Edward R. Cook;  Jonathan Barichivich;  Duncan A. Christie;  Ricardo Villalba;  Carlos LeQuesne;  Ana M. Srur;  M. Eugenia Ferrero;  Álvaro González-Reyes;  Fleur Couvreux;  Vladimir Matskovsky;  Juan C. Aravena;  Antonio Lara;  Ignacio A. Mundo;  Facundo Rojas;  María R. Prieto;  Jason E. Smerdon;  Lucas O. Bianchi;  Mariano H. Masiokas;  Rocio Urrutia-Jalabert;  Milagros Rodriguez-Catón;  Ariel A. Muñoz;  Moises Rojas-Badilla;  Claudio Alvarez;  Lidio Lopez;  Brian H. Luckman;  David Lister;  Ian Harris;  Philip D. Jones;  A. Park Williams;  Gonzalo Velazquez;  Diego Aliste;  Isabella Aguilera-Betti;  Eugenia Marcotti;  Felipe Flores;  Tomás Muñoz;  Emilio Cuq;  José A. Boninsegna
收藏  |  浏览/下载:11/0  |  提交时间:2020/07/09
Global CO2 emissions from dry inland waters share common drivers across ecosystems 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Keller, P. S.;  Catalan, N.;  von Schiller, D.;  Grossart, H-P;  Koschorreck, M.;  Obrador, B.;  Frassl, M. A.;  Karakaya, N.;  Barros, N.;  Howitt, J. A.;  Mendoza-Lera, C.;  Pastor, A.;  Flaim, G.;  Aben, R.;  Riis, T.;  Arce, M., I;  Onandia, G.;  Paranaiba, J. R.;  Linkhorst, A.;  del Campo, R.;  Amado, A. M.;  Cauvy-Fraunie, S.;  Brothers, S.;  Condon, J.;  Mendonca, R. F.;  Reverey, F.;  Room, E-, I;  Datry, T.;  Roland, F.;  Laas, A.;  Obertegger, U.;  Park, J-H;  Wang, H.;  Kosten, S.;  Gomez, R.;  Feijoo, C.;  Elosegi, A.;  Sanchez-Montoya, M. M.;  Finlayson, C. M.;  Melita, M.;  Oliveira Junior, E. S.;  Muniz, C. C.;  Gomez-Gener, L.;  Leigh, C.;  Zhang, Q.;  Marce, R.
收藏  |  浏览/下载:13/0  |  提交时间:2020/05/13
Extant timetrees are consistent with a myriad of diversification histories 期刊论文
NATURE, 2020, 580 (7804) : 502-+
作者:  Bhaskar, M. K.;  Riedinger, R.;  Machielse, B.;  Levonian, D. S.;  Nguyen, C. T.;  Knall, E. N.;  Park, H.;  Englund, D.;  Loncar, M.;  Sukachev, D. D.;  Lukin, M. D.
收藏  |  浏览/下载:19/0  |  提交时间:2020/07/03

An infinite number of alternative diversification scenarios-which may have markedly different, but equally plausible, dynamics-can underpin a given time-calibrated phylogeny of extant species, suggesting many previous studies have over-interpreted phylogenetic evidence.


Time-calibrated phylogenies of extant species (referred to here as '  extant timetrees'  ) are widely used for estimating diversification dynamics(1). However, there has been considerable debate surrounding the reliability of these inferences(2-5) and, to date, this critical question remains unresolved. Here we clarify the precise information that can be extracted from extant timetrees under the generalized birth-death model, which underlies most existing methods of estimation. We prove that, for any diversification scenario, there exists an infinite number of alternative diversification scenarios that are equally likely to have generated any given extant timetree. These '  congruent'  scenarios cannot possibly be distinguished using extant timetrees alone, even in the presence of infinite data. Importantly, congruent diversification scenarios can exhibit markedly different and yet similarly plausible dynamics, which suggests that many previous studies may have over-interpreted phylogenetic evidence. We introduce identifiable and easily interpretable variables that contain all available information about past diversification dynamics, and demonstrate that these can be estimated from extant timetrees. We suggest that measuring and modelling these identifiable variables offers a more robust way to study historical diversification dynamics. Our findings also make it clear that palaeontological data will continue to be crucial for answering some macroevolutionary questions.


  
Mechanical regulation of glycolysis via cytoskeleton architecture 期刊论文
NATURE, 2020, 578 (7796) : 621-+
作者:  Faivre, Emily J.;  McDaniel, Keith F.;  Albert, Daniel H.;  Mantena, Srinivasa R.;  Plotnik, Joshua P.;  Wilcox, Denise;  Zhang, Lu;  Bui, Mai H.;  Sheppard, George S.;  Wang, Le;  Sehgal, Vasudha;  Lin, Xiaoyu;  Huang, Xiaoli;  Lu, Xin;  Uziel, Tamar;  Hessler, Paul;  Lam, Lloyd T.;  Bellin, Richard J.;  Mehta, Gaurav;  Fidanze, Steve;  Pratt, John K.;  Liu, Dachun;  Hasvold, Lisa A.;  Sun, Chaohong;  Panchal, Sanjay C.;  Nicolette, John J.;  Fossey, Stacey L.;  Park, Chang H.;  Longenecker, Kenton;  Bigelow, Lance;  Torrent, Maricel;  Rosenberg, Saul H.;  Kati, Warren M.;  Shen, Yu
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The mechanics of the cellular microenvironment continuously modulates cell functions such as growth, survival, apoptosis, differentiation and morphogenesis via cytoskeletal remodelling and actomyosin contractility(1-3). Although all of these processes consume energy(4,5), it is unknown whether and how cells adapt their metabolic activity to variable mechanical cues. Here we report that the transfer of human bronchial epithelial cells from stiff to soft substrates causes a downregulation of glycolysis via proteasomal degradation of the rate-limiting metabolic enzyme phosphofructokinase (PFK). PFK degradation is triggered by the disassembly of stress fibres, which releases the PFK-targeting E3 ubiquitin ligase tripartite motif (TRIM)-containing protein 21 (TRIM21). Transformed non-small-cell lung cancer cells, which maintain high glycolytic rates regardless of changing environmental mechanics, retain PFK expression by downregulating TRIM21, and by sequestering residual TRIM21 on a stress-fibre subset that is insensitive to substrate stiffness. Our data reveal a mechanism by which glycolysis responds to architectural features of the actomyosin cytoskeleton, thus coupling cell metabolism to the mechanical properties of the surrounding tissue. These processes enable normal cells to tune energy production in variable microenvironments, whereas the resistance of the cytoskeleton in response to mechanical cues enables the persistence of high glycolytic rates in cancer cells despite constant alterations of the tumour tissue.


Glycolysis in normal epithelial cells responds to microenvironmental mechanics via the modulation of actin bundles that sequester the phosphofructokinase-targeting ubiquitin ligase TRIM21, a process superseded by persistent actin bundles in cancer cells.