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Global CO2 emissions from dry inland waters share common drivers across ecosystems 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Keller, P. S.;  Catalan, N.;  von Schiller, D.;  Grossart, H-P;  Koschorreck, M.;  Obrador, B.;  Frassl, M. A.;  Karakaya, N.;  Barros, N.;  Howitt, J. A.;  Mendoza-Lera, C.;  Pastor, A.;  Flaim, G.;  Aben, R.;  Riis, T.;  Arce, M., I;  Onandia, G.;  Paranaiba, J. R.;  Linkhorst, A.;  del Campo, R.;  Amado, A. M.;  Cauvy-Fraunie, S.;  Brothers, S.;  Condon, J.;  Mendonca, R. F.;  Reverey, F.;  Room, E-, I;  Datry, T.;  Roland, F.;  Laas, A.;  Obertegger, U.;  Park, J-H;  Wang, H.;  Kosten, S.;  Gomez, R.;  Feijoo, C.;  Elosegi, A.;  Sanchez-Montoya, M. M.;  Finlayson, C. M.;  Melita, M.;  Oliveira Junior, E. S.;  Muniz, C. C.;  Gomez-Gener, L.;  Leigh, C.;  Zhang, Q.;  Marce, R.
收藏  |  浏览/下载:14/0  |  提交时间:2020/05/13
Extant timetrees are consistent with a myriad of diversification histories 期刊论文
NATURE, 2020, 580 (7804) : 502-+
作者:  Bhaskar, M. K.;  Riedinger, R.;  Machielse, B.;  Levonian, D. S.;  Nguyen, C. T.;  Knall, E. N.;  Park, H.;  Englund, D.;  Loncar, M.;  Sukachev, D. D.;  Lukin, M. D.
收藏  |  浏览/下载:19/0  |  提交时间:2020/07/03

An infinite number of alternative diversification scenarios-which may have markedly different, but equally plausible, dynamics-can underpin a given time-calibrated phylogeny of extant species, suggesting many previous studies have over-interpreted phylogenetic evidence.


Time-calibrated phylogenies of extant species (referred to here as '  extant timetrees'  ) are widely used for estimating diversification dynamics(1). However, there has been considerable debate surrounding the reliability of these inferences(2-5) and, to date, this critical question remains unresolved. Here we clarify the precise information that can be extracted from extant timetrees under the generalized birth-death model, which underlies most existing methods of estimation. We prove that, for any diversification scenario, there exists an infinite number of alternative diversification scenarios that are equally likely to have generated any given extant timetree. These '  congruent'  scenarios cannot possibly be distinguished using extant timetrees alone, even in the presence of infinite data. Importantly, congruent diversification scenarios can exhibit markedly different and yet similarly plausible dynamics, which suggests that many previous studies may have over-interpreted phylogenetic evidence. We introduce identifiable and easily interpretable variables that contain all available information about past diversification dynamics, and demonstrate that these can be estimated from extant timetrees. We suggest that measuring and modelling these identifiable variables offers a more robust way to study historical diversification dynamics. Our findings also make it clear that palaeontological data will continue to be crucial for answering some macroevolutionary questions.


  
Mechanical regulation of glycolysis via cytoskeleton architecture 期刊论文
NATURE, 2020, 578 (7796) : 621-+
作者:  Faivre, Emily J.;  McDaniel, Keith F.;  Albert, Daniel H.;  Mantena, Srinivasa R.;  Plotnik, Joshua P.;  Wilcox, Denise;  Zhang, Lu;  Bui, Mai H.;  Sheppard, George S.;  Wang, Le;  Sehgal, Vasudha;  Lin, Xiaoyu;  Huang, Xiaoli;  Lu, Xin;  Uziel, Tamar;  Hessler, Paul;  Lam, Lloyd T.;  Bellin, Richard J.;  Mehta, Gaurav;  Fidanze, Steve;  Pratt, John K.;  Liu, Dachun;  Hasvold, Lisa A.;  Sun, Chaohong;  Panchal, Sanjay C.;  Nicolette, John J.;  Fossey, Stacey L.;  Park, Chang H.;  Longenecker, Kenton;  Bigelow, Lance;  Torrent, Maricel;  Rosenberg, Saul H.;  Kati, Warren M.;  Shen, Yu
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The mechanics of the cellular microenvironment continuously modulates cell functions such as growth, survival, apoptosis, differentiation and morphogenesis via cytoskeletal remodelling and actomyosin contractility(1-3). Although all of these processes consume energy(4,5), it is unknown whether and how cells adapt their metabolic activity to variable mechanical cues. Here we report that the transfer of human bronchial epithelial cells from stiff to soft substrates causes a downregulation of glycolysis via proteasomal degradation of the rate-limiting metabolic enzyme phosphofructokinase (PFK). PFK degradation is triggered by the disassembly of stress fibres, which releases the PFK-targeting E3 ubiquitin ligase tripartite motif (TRIM)-containing protein 21 (TRIM21). Transformed non-small-cell lung cancer cells, which maintain high glycolytic rates regardless of changing environmental mechanics, retain PFK expression by downregulating TRIM21, and by sequestering residual TRIM21 on a stress-fibre subset that is insensitive to substrate stiffness. Our data reveal a mechanism by which glycolysis responds to architectural features of the actomyosin cytoskeleton, thus coupling cell metabolism to the mechanical properties of the surrounding tissue. These processes enable normal cells to tune energy production in variable microenvironments, whereas the resistance of the cytoskeleton in response to mechanical cues enables the persistence of high glycolytic rates in cancer cells despite constant alterations of the tumour tissue.


Glycolysis in normal epithelial cells responds to microenvironmental mechanics via the modulation of actin bundles that sequester the phosphofructokinase-targeting ubiquitin ligase TRIM21, a process superseded by persistent actin bundles in cancer cells.


  
Dynamic control of plant water use using designed ABA receptor agonists 期刊论文
SCIENCE, 2019, 366 (6464) : 446-+
作者:  Vaidya, Aditya S.;  Helander, Jonathan D. M.;  Peterson, Francis C.;  Elzinga, Dezi;  Dejonghe, Wim;  Kaundal, Amita;  Park, Sang-Youl;  Xing, Zenan;  Mega, Ryousuke;  Takeuchi, Jun;  Khanderahoo, Bardia;  Bishay, Steven;  Volkman, Brian F.;  Todoroki, Yasushi;  Okamoto, Masanori;  Cutler, Sean R.
收藏  |  浏览/下载:4/0  |  提交时间:2019/11/27
Changes in timing of seasonal peak photosynthetic activity in northern ecosystems 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (7) : 2382-2395
作者:  Park, Taejin;  Chen, Chi;  Macias-Fauria, Marc;  Tommervik, Hans;  Choi, Sungho;  Winkler, Alexander;  Bhatt, Uma S.;  Walker, Donald A.;  Piao, Shilong;  Brovkin, Victor;  Nemani, Ramakrishna R.;  Myneni, Ranga B.
收藏  |  浏览/下载:17/0  |  提交时间:2019/11/27
carbon cycle  climate change  climate constraint  earth system model  eddy covariance  gross primary productivity  law of minimum  photosynthetic seasonality  remote sensing  
In situ X-ray diffraction measurement of shock-wave-driven twinning and lattice dynamics 期刊论文
NATURE, 2017, 550 (7677) : 496-+
作者:  Wehrenberg, C. E.;  McGonegle, D.;  Bolme, C.;  Higginbotham, A.;  Lazicki, A.;  Lee, H. J.;  Nagler, B.;  Park, H. -S.;  Remington, B. A.;  Rudd, R. E.;  Sliwa, M.;  Suggit, M.;  Swift, D.;  Tavella, F.;  Zepeda-Ruiz, L.;  Wark, J. S.
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
Binodal, wireless epidermal electronic systems with in-sensor analytics for neonatal intensive care 期刊论文
SCIENCE, 2019, 363 (6430) : 947-+
作者:  Chung, Ha Uk;  Kim, Bong Hoon;  Lee, Jong Yoon;  Lee, Jungyup;  Xie, Zhaoqian;  Ibler, Erin M.;  Lee, KunHyuck;  Banks, Anthony;  Jeong, Ji Yoon;  Kim, Jongwon;  Ogle, Christopher;  Grande, Dominic;  Yu, Yongjoon;  Jang, Hokyung;  Assem, Pourya;  Ryu, Dennis;  Kwak, Jean Won;  Namkoong, Myeong;  Park, Jun Bin;  Lee, Yechan;  Kim, Do Hoon;  Ryu, Arin;  Jeong, Jaeseok;  You, Kevin;  Ji, Bowen;  Liu, Zhuangjian;  Huo, Qingze;  Feng, Xue;  Deng, Yujun;  Xu, Yeshou;  Jang, Kyung-In;  Kim, Jeonghyun;  Zhang, Yihui;  Ghaffari, Roozbeh;  Rand, Casey M.;  Schau, Molly;  Hamvas, Aaron;  Weese-Mayer, Debra E.;  Huang, Yonggang;  Lee, Seung Min;  Lee, Chi Hwan;  Shanbhag, Naresh R.;  Paller, Amy S.;  Xu, Shuai;  Rogers, John A.
收藏  |  浏览/下载:21/0  |  提交时间:2019/11/27
Large-scale transcriptome-wide association study identifies new prostate cancer risk regions (vol 9, 4079, 2018) 期刊论文
NATURE COMMUNICATIONS, 2019, 10
作者:  Mancuso, Nicholas;  Gayther, Simon;  Gusev, Alexander;  Zheng, Wei;  Penney, Kathryn L.;  Kote-Jarai, Zsofia;  Eeles, Rosalind;  Freedman, Matthew;  Haiman, Christopher;  Pasaniuc, Bogdan;  Henderson, Brian E.;  Benlloch, Sara;  Schumacher, Fredrick R.;  Al Olama, Ali Amin;  Muir, Kenneth;  Berndt, Sonja I.;  Conti, David V.;  Wiklund, Fredrik;  Chanock, Stephen;  Stevens, Victoria L.;  Tangen, Catherine M.;  Batra, Jyotsna;  Clements, Judith;  Gronberg, Henrik;  Pashayan, Nora;  Schleutker, Johanna;  Albanes, Demetrius;  Weinstein, Stephanie;  Wolk, Alicja;  West, Catharine;  Mucci, Lorelei;  Cancel-Tassin, Geraldine;  Koutros, Stella;  Sorensen, Karina Dalsgaard;  Maehle, Lovise;  Neal, David E.;  Hamdy, Freddie C.;  Donovan, Jenny L.;  Travis, Ruth C.;  Hamilton, Robert J.;  Ingles, Sue Ann;  Rosenstein, Barry;  Lu, Yong-Jie;  Giles, Graham G.;  Kibel, Adam S.;  Vega, Ana;  Kogevinas, Manolis;  Park, Jong Y.;  Stanford, Janet L.;  Cybulski, Cezary;  Nordestgaard, Borge G.;  Brenner, Hermann;  Maier, Christiane;  Kim, Jeri;  John, Esther M.;  Teixeira, Manuel R.;  Neuhausen, Susan L.;  De Ruyck, Kim;  Razack, Azad;  Newcomb, Lisa F.;  Lessel, Davor;  Kaneva, Radka;  Usmani, Nawaid;  Claessens, Frank;  Townsend, Paul A.;  Gago-Dominguez, Manuela;  Roobol, Monique J.;  Menegaux, Florence;  Khaw, Kay-Tee;  Cannon-Albright, Lisa;  Pandha, Hardev;  Thibodeau, Stephen N.;  Hunter, David J.;  Kraft, Peter
收藏  |  浏览/下载:16/0  |  提交时间:2019/11/27
Estimating Source Region Influences on Black Carbon Abundance, Microphysics, and Radiative Effect Observed Over South Korea 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2018, 123 (23) : 13527-13548
作者:  Lamb, Kara D.;  Perring, Anne E.;  Samset, Bjorn;  Peterson, Dave;  Davis, Sean;  Anderson, Bruce E.;  Beyersdorf, Andreas;  Blake, Donald R.;  Campuzano-Jost, Pedro;  Corr, Chelsea A.;  Diskin, Glenn S.;  Kondo, Yutaka;  Moteki, Nobuhiro;  Nault, Benjamin A.;  Oh, Jun;  Park, Minsu;  Pusede, Sally E.;  Simpson, Isobel J.;  Thornhill, Kenneth L.;  Wisthaler, Armin;  Schwarz, Joshua P.
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
black carbon  direct radiative forcing  South Korea  single particle soot photometer  aircraft observations  
The Implications for Radiative Cloud Forcing via the Link Between Shallow Convection and Planetary Boundary Layer Mixing 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2018, 123 (23) : 13203-13218
作者:  Park, R. -S.;  Kwon, Y. C.
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
PBL mixing  shallow convection  vertical transport  radiation  clouds