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γδ T cells regulate the intestinal response to nutrient sensing 期刊论文
Science, 2021
作者:  Zuri A. Sullivan;  William Khoury-Hanold;  Jaechul Lim;  Chris Smillie;  Moshe Biton;  Bernardo S. Reis;  Rachel K. Zwick;  Scott D. Pope;  Kavita Israni-Winger;  Roham Parsa;  Naomi H. Philip;  Saleh Rashed;  Noah Palm;  Andrew Wang;  Daniel Mucida;  Aviv Regev;  Ruslan Medzhitov
收藏  |  浏览/下载:12/0  |  提交时间:2021/03/29
Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems 期刊论文
Science, 2021
作者:  Shahar Alon;  Daniel R. Goodwin;  Anubhav Sinha;  Asmamaw T. Wassie;  Fei Chen;  Evan R. Daugharthy;  Yosuke Bando;  Atsushi Kajita;  Andrew G. Xue;  Karl Marrett;  Robert Prior;  Yi Cui;  Andrew C. Payne;  Chun-Chen Yao;  Ho-Jun Suk;  Ru Wang;  Chih-Chieh Yu;  Paul Tillberg;  Paul Reginato;  Nikita Pak;  Songlei Liu;  Sukanya Punthambaker;  Eswar P. R. Iyer;  Richie E. Kohman;  Jeremy A. Miller;  Ed S. Lein;  Ana Lako;  Nicole Cullen;  Scott Rodig;  Karla Helvie;  Daniel L. Abravanel;  Nikhil Wagle;  Bruce E. Johnson;  Johanna Klughammer;  Michal Slyper;  Julia Waldman;  Judit Jané-Valbuena;  Orit Rozenblatt-Rosen;  Aviv Regev;  IMAXT Consortium19¶;  George M. Church;  Adam H. Marblestone;  Edward S. Boyden
收藏  |  浏览/下载:15/0  |  提交时间:2021/02/17
In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes 期刊论文
Science, 2020
作者:  Xin Jin;  Sean K. Simmons;  Amy Guo;  Ashwin S. Shetty;  Michelle Ko;  Lan Nguyen;  Vahbiz Jokhi;  Elise Robinson;  Paul Oyler;  Nathan Curry;  Giulio Deangeli;  Simona Lodato;  Joshua Z. Levin;  Aviv Regev;  Feng Zhang;  Paola Arlotta
收藏  |  浏览/下载:8/0  |  提交时间:2020/11/30
Investigation of the fine structure of antihydrogen 期刊论文
NATURE, 2020, 578 (7795) : 375-+
作者:  Zhang, Bing;  Ma, Sai;  Rachmin, Inbal;  He, Megan;  Baral, Pankaj;  Choi, Sekyu;  Goncalves, William A.;  Shwartz, Yulia;  Fast, Eva M.;  Su, Yiqun;  Zon, Leonard I.;  Regev, Aviv;  Buenrostro, Jason D.;  Cunha, Thiago M.;  Chiu, Isaac M.;  Fisher, David E.;  Hsu, Ya-Chieh
收藏  |  浏览/下载:25/0  |  提交时间:2020/07/03

At the historic Shelter Island Conference on the Foundations of Quantum Mechanics in 1947, Willis Lamb reported an unexpected feature in the fine structure of atomic hydrogen: a separation of the 2S(1/2) and 2P(1/2) states(1). The observation of this separation, now known as the Lamb shift, marked an important event in the evolution of modern physics, inspiring others to develop the theory of quantum electrodynamics(2-5). Quantum electrodynamics also describes antimatter, but it has only recently become possible to synthesize and trap atomic antimatter to probe its structure. Mirroring the historical development of quantum atomic physics in the twentieth century, modern measurements on anti-atoms represent a unique approach for testing quantum electrodynamics and the foundational symmetries of the standard model. Here we report measurements of the fine structure in the n = 2 states of antihydrogen, the antimatter counterpart of the hydrogen atom. Using optical excitation of the 1S-2P Lyman-alpha transitions in antihydrogen(6), we determine their frequencies in a magnetic field of 1 tesla to a precision of 16 parts per billion. Assuming the standard Zeeman and hyperfine interactions, we infer the zero-field fine-structure splitting (2P(1/2)-2P(3/2)) in antihydrogen. The resulting value is consistent with the predictions of quantum electrodynamics to a precision of 2 per cent. Using our previously measured value of the 1S-2S transition frequency(6,7), we find that the classic Lamb shift in antihydrogen (2S(1/2)-2P(1/2) splitting at zero field) is consistent with theory at a level of 11 per cent. Our observations represent an important step towards precision measurements of the fine structure and the Lamb shift in the antihydrogen spectrum as tests of the charge-parity-time symmetry(8) and towards the determination of other fundamental quantities, such as the antiproton charge radius(9,10), in this antimatter system.


Precision measurements of the 1S-2P transition in antihydrogen that take into account the standard Zeeman and hyperfine effects confirm the predictions of quantum electrodynamics.


  
Clades of huge phages from across Earth's ecosystems 期刊论文
NATURE, 2020, 578 (7795) : 425-+
作者:  Zhang, Bing;  Ma, Sai;  Rachmin, Inbal;  He, Megan;  Baral, Pankaj;  Choi, Sekyu;  Goncalves, William A.;  Shwartz, Yulia;  Fast, Eva M.;  Su, Yiqun;  Zon, Leonard I.;  Regev, Aviv;  Buenrostro, Jason D.;  Cunha, Thiago M.;  Chiu, Isaac M.
收藏  |  浏览/下载:36/0  |  提交时间:2020/07/03

Bacteriophages typically have small genomes(1) and depend on their bacterial hosts for replication(2). Here we sequenced DNA from diverse ecosystems and found hundreds of phage genomes with lengths of more than 200 kilobases (kb), including a genome of 735 kb, which is-to our knowledge-the largest phage genome to be described to date. Thirty-five genomes were manually curated to completion (circular and no gaps). Expanded genetic repertoires include diverse and previously undescribed CRISPR-Cas systems, transfer RNAs (tRNAs), tRNA synthetases, tRNA-modification enzymes, translation-initiation and elongation factors, and ribosomal proteins. The CRISPR-Cas systems of phages have the capacity to silence host transcription factors and translational genes, potentially as part of a larger interaction network that intercepts translation to redirect biosynthesis to phage-encoded functions. In addition, some phages may repurpose bacterial CRISPR-Cas systems to eliminate competing phages. We phylogenetically define the major clades of huge phages from human and other animal microbiomes, as well as from oceans, lakes, sediments, soils and the built environment. We conclude that the large gene inventories of huge phages reflect a conserved biological strategy, and that the phages are distributed across a broad bacterial host range and across Earth'  s ecosystems.


Genomic analyses of major clades of huge phages sampled from across Earth'  s ecosystems show that they have diverse genetic inventories, including a variety of CRISPR-Cas systems and translation-relevant genes.


  
Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region 期刊论文
SCIENCE, 2018, 362 (6416) : 792-+
作者:  Moffitt, Jeffrey R.;  Bambah-Mukku, Dhananjay;  Eichhorn, Stephen W.;  Vaughn, Eric;  Shekhar, Karthik;  Perez, Julio D.;  Rubinstein, Nimrod D.;  Hao, Junjie;  Regev, Aviv;  Dulac, Catherine;  Zhuang, Xiaowei
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis 期刊论文
SCIENCE, 2018, 360 (6392) : 979-+
作者:  Farrell, Jeffrey A.;  Wang, Yiqun;  Riesenfeld, Samantha J.;  Shekhar, Karthik;  Regev, Aviv;  Schier, Alexander F.
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq 期刊论文
SCIENCE, 2018, 360 (6386) : 331-335
作者:  Filbin, Mariella G.;  Tirosh, Itay;  Hovestadt, Volker;  Shaw, McKenzie L.;  Escalante, Leah E.;  Mathewson, Nathan D.;  Neftel, Cyril;  Frank, Nelli;  Pelton, Kristine;  Hebert, ChristineM.;  Haberler, Christine;  Yizhak, Keren;  Gojo, Johannes;  Egervari, Kristof;  Mount, Christopher;  van Galen, Peter;  Bonal, Dennis M.;  Quang-De Nguyen;  Beck, Alexander;  Sinai, Claire;  Czech, Thomas;  Dorfer, Christian;  Goumnerova, Liliana;  Lavarino, Cinzia;  Carcaboso, Angel M.;  Mora, Jaume;  Mylvaganam, Ravindra;  Luo, Christina C.;  Peyrl, Andreas;  Popovic, Mara;  Azizi, Amedeo;  Batchelor, Tracy T.;  Frosch, Matthew P.;  Martinez-Lage, Maria;  Kieran, Mark W.;  Bandopadhayay, Pratiti;  Beroukhim, Rameen;  Fritsch, Gerhard;  Getz, Gad;  Rozenblatt-Rosen, Orit;  Wucherpfennig, Kai W.;  Louis, David N.;  Monje, Michelle;  Slavc, Irene;  Ligon, Keith L.;  Golub, Todd R.;  Regev, Aviv;  Bernstein, Bradley E.;  Suva, Mario L.
收藏  |  浏览/下载:17/0  |  提交时间:2019/11/27
Single-cell transcriptomics to explore the immune system in health and disease 期刊论文
SCIENCE, 2017, 358 (6359) : 58-63
作者:  Stubbington, Michael J. T.;  Rozenblatt-Rosen, Orit;  Regev, Aviv;  Teichmann, Sarah A.
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
Nucleic acid detection with CRISPR-Cas13a/C2c2 期刊论文
SCIENCE, 2017, 356 (6336) : 438-+
作者:  Gootenberg, Jonathan S.;  Abudayyeh, Omar O.;  Lee, Jeong Wook;  Essletzbichler, Patrick;  Dy, Aaron J.;  Joung, Julia;  Verdine, Vanessa;  Donghia, Nina;  Daringer, Nichole M.;  Freije, Catherine A.;  Myhrvold, Cameron;  Bhattacharyya, Roby P.;  Livny, Jonathan;  Regev, Aviv;  Koonin, Eugene V.;  Hung, Deborah T.;  Sabeti, Pardis C.;  Collins, James J.;  Zhang, Feng
收藏  |  浏览/下载:13/0  |  提交时间:2019/11/27