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SARS-CoV-2 immune evasion by the B.1.427/B.1.429 variant of concern 期刊论文
Science, 2021
作者:  Matthew McCallum;  Jessica Bassi;  Anna De Marco;  Alex Chen;  Alexandra C. Walls;  Julia Di Iulio;  M. Alejandra Tortorici;  Mary-Jane Navarro;  Chiara Silacci-Fregni;  Christian Saliba;  Kaitlin R. Sprouse;  Maria Agostini;  Dora Pinto;  Katja Culap;  Siro Bianchi;  Stefano Jaconi;  Elisabetta Cameroni;  John E. Bowen;  Sasha W. Tilles;  Matteo Samuele Pizzuto;  Sonja Bernasconi Guastalla;  Giovanni Bona;  Alessandra Franzetti Pellanda;  Christian Garzoni;  Wesley C. Van Voorhis;  Laura E. Rosen;  Gyorgy Snell;  Amalio Telenti;  Herbert W. Virgin;  Luca Piccoli;  Davide Corti;  David Veesler
收藏  |  浏览/下载:11/0  |  提交时间:2021/08/10
Mapping the cellular origin and early evolution of leukemia in Down syndrome 期刊论文
Science, 2021
作者:  Elvin Wagenblast;  Joana Araújo;  Olga I. Gan;  Sarah K. Cutting;  Alex Murison;  Gabriela Krivdova;  Maria Azkanaz;  Jessica L. McLeod;  Sabrina A. Smith;  Blaise A. Gratton;  Sajid A. Marhon;  Martino Gabra;  Jessie J. F. Medeiros;  Sanaz Manteghi;  Jian Chen;  Michelle Chan-Seng-Yue;  Laura Garcia-Prat;  Leonardo Salmena;  Daniel D. De Carvalho;  Sagi Abelson;  Mohamed Abdelhaleem;  Karen Chong;  Maian Roifman;  Patrick Shannon;  Jean C. Y. Wang;  Johann K. Hitzler;  David Chitayat;  John E. Dick;  Eric R. Lechman
收藏  |  浏览/下载:23/0  |  提交时间:2021/07/27
Identifying dominant environmental predictors of freshwater wetland methane fluxes across diurnal to seasonal time scales 期刊论文
Global Change Biology, 2021
作者:  Sara H. Knox;  Sheel Bansal;  Gavin McNicol;  Karina Schafer;  Cove Sturtevant;  Masahito Ueyama;  Alex C. Valach;  Dennis Baldocchi;  Kyle Delwiche;  Ankur R. Desai;  Eugenie Euskirchen;  Jinxun Liu;  Annalea Lohila;  Avni Malhotra;  Lulie Melling;  William Riley;  Benjamin R. K. Runkle;  Jessica Turner;  Rodrigo Vargas;  Qing Zhu;  Tuula Alto;  Etienne Fluet-Chouinard;  Mathias Goeckede;  Joe R. Melton;  Oliver Sonnentag;  Timo Vesala;  Eric Ward;  Zhen Zhang;  Sarah Feron;  Zutao Ouyang;  Pavel Alekseychik;  Mika Aurela;  Gil Bohrer;  David I. Campbell;  Jiquan Chen;  Housen Chu;  Higo J. Dalmagro;  Jordan P. Goodrich;  Pia Gottschalk;  Takashi Hirano;  Hiroki Iwata;  Gerald Jurasinski;  Minseok Kang;  Franziska Koebsch;  Ivan Mammarella;  Mats B. Nilsson;  Keisuke Ono;  Matthias Peichl;  Olli Peltola;  Youngryel Ryu;  Torsten Sachs;  Ayaka Sakabe;  Jed P. Sparks;  Eeva-Stiina Tuittila;  George L. Vourlitis;  Guan X. Wong;  Lisamarie Windham-Myers;  Benjamin Poulter;  Robert B. Jackson
收藏  |  浏览/下载:21/0  |  提交时间:2021/06/07
Haplotype-resolved diverse human genomes and integrated analysis of structural variation 期刊论文
Science, 2021
作者:  Peter Ebert;  Peter A. Audano;  Qihui Zhu;  Bernardo Rodriguez-Martin;  David Porubsky;  Marc Jan Bonder;  Arvis Sulovari;  Jana Ebler;  Weichen Zhou;  Rebecca Serra Mari;  Feyza Yilmaz;  Xuefang Zhao;  PingHsun Hsieh;  Joyce Lee;  Sushant Kumar;  Jiadong Lin;  Tobias Rausch;  Yu Chen;  Jingwen Ren;  Martin Santamarina;  Wolfram Höps;  Hufsah Ashraf;  Nelson T. Chuang;  Xiaofei Yang;  Katherine M. Munson;  Alexandra P. Lewis;  Susan Fairley;  Luke J. Tallon;  Wayne E. Clarke;  Anna O. Basile;  Marta Byrska-Bishop;  André Corvelo;  Uday S. Evani;  Tsung-Yu Lu;  Mark J. P. Chaisson;  Junjie Chen;  Chong Li;  Harrison Brand;  Aaron M. Wenger;  Maryam Ghareghani;  William T. Harvey;  Benjamin Raeder;  Patrick Hasenfeld;  Allison A. Regier;  Haley J. Abel;  Ira M. Hall;  Paul Flicek;  Oliver Stegle;  Mark B. Gerstein;  Jose M. C. Tubio;  Zepeng Mu;  Yang I. Li;  Xinghua Shi;  Alex R. Hastie;  Kai Ye;  Zechen Chong;  Ashley D. Sanders;  Michael C. Zody;  Michael E. Talkowski;  Ryan E. Mills;  Scott E. Devine;  Charles Lee;  Jan O. Korbel;  Tobias Marschall;  Evan E. Eichler
收藏  |  浏览/下载:24/0  |  提交时间:2021/04/06
De novo design of potent and resilient hACE2 decoys to neutralize SARS-CoV-2 期刊论文
Science, 2020
作者:  Thomas W. Linsky;  Renan Vergara;  Nuria Codina;  Jorgen W. Nelson;  Matthew J. Walker;  Wen Su;  Christopher O. Barnes;  Tien-Ying Hsiang;  Katharina Esser-Nobis;  Kevin Yu;  Z. Beau Reneer;  Yixuan J. Hou;  Tanu Priya;  Masaya Mitsumoto;  Avery Pong;  Uland Y. Lau;  Marsha L. Mason;  Jerry Chen;  Alex Chen;  Tania Berrocal;  Hong Peng;  Nicole S. Clairmont;  Javier Castellanos;  Yu-Ru Lin;  Anna Josephson-Day;  Ralph S. Baric;  Deborah H. Fuller;  Carl D. Walkey;  Ted M. Ross;  Ryan Swanson;  Pamela J. Bjorkman;  Michael Gale;  Luis M. Blancas-Mejia;  Hui-Ling Yen;  Daniel-Adriano Silva
收藏  |  浏览/下载:11/0  |  提交时间:2020/12/07
Modelling climate change impacts on maize yields under low nitrogen input conditions in sub‐Saharan Africa 期刊论文
Global Change Biology, 2020
作者:  Gatien N. Falconnier;  Marc Corbeels;  Kenneth J. Boote;  Franç;  ois Affholder;  Myriam Adam;  Dilys S. MacCarthy;  Alex C. Ruane;  Claas Nendel;  Anthony M. Whitbread;  É;  ric Justes;  Lajpat R. Ahuja;  Folorunso M. Akinseye;  Isaac N. Alou;  Kokou A. Amouzou;  Saseendran S. Anapalli;  Christian Baron;  Bruno Basso;  Fré;  ;  ric Baudron;  Patrick Bertuzzi;  Andrew J. Challinor;  Yi Chen;  Delphine Deryng;  Maha L. Elsayed;  Babacar Faye;  Thomas Gaiser;  Marcelo Galdos;  Sebastian Gayler;  Edward Gerardeaux;  Michel Giner;  Brian Grant;  Gerrit Hoogenboom;  Esther S. Ibrahim;  Bahareh Kamali;  Kurt Christian Kersebaum;  Soo‐;  Hyung Kim;  Michael van der Laan;  Louise Leroux;  Jon I. Lizaso;  Bernardo Maestrini;  Elizabeth A. Meier;  Fasil Mequanint;  Alain Ndoli;  Cheryl H. Porter;  Eckart Priesack;  Dominique Ripoche;  Tesfaye S. Sida;  Upendra Singh;  Ward N. Smith;  Amit Srivastava;  Sumit Sinha;  Fulu Tao;  Peter J. Thorburn;  Dennis Timlin;  Bouba Traore;  Tracy Twine;  Heidi Webber
收藏  |  浏览/下载:9/0  |  提交时间:2020/08/25
DNA vaccine protection against SARS-CoV-2 in rhesus macaques 期刊论文
Science, 2020
作者:  Jingyou Yu;  Lisa H. Tostanoski;  Lauren Peter;  Noe B. Mercado;  Katherine McMahan;  Shant H. Mahrokhian;  Joseph P. Nkolola;  Jinyan Liu;  Zhenfeng Li;  Abishek Chandrashekar;  David R. Martinez;  Carolin Loos;  Caroline Atyeo;  Stephanie Fischinger;  John S. Burke;  Matthew D. Slein;  Yuezhou Chen;  Adam Zuiani;  Felipe J. N. Lelis;  Meghan Travers;  Shaghayegh Habibi;  Laurent Pessaint;  Alex Van Ry;  Kelvin Blade;  Renita Brown;  Anthony Cook;  Brad Finneyfrock;  Alan Dodson;  Elyse Teow;  Jason Velasco;  Roland Zahn;  Frank Wegmann;  Esther A. Bondzie;  Gabriel Dagotto;  Makda S. Gebre;  Xuan He;  Catherine Jacob-Dolan;  Marinela Kirilova;  Nicole Kordana;  Zijin Lin;  Lori F. Maxfield;  Felix Nampanya;  Ramya Nityanandam;  John D. Ventura;  Huahua Wan;  Yongfei Cai;  Bing Chen;  Aaron G. Schmidt;  Duane R. Wesemann;  Ralph S. Baric;  Galit Alter;  Hanne Andersen;  Mark G. Lewis;  Dan H. Barouch
收藏  |  浏览/下载:17/0  |  提交时间:2020/08/18
Best-practice biodiversity safeguards for Belt and Road Initiative's financiers 期刊论文
NATURE SUSTAINABILITY, 2020
作者:  Narain, Divya;  Maron, Martine;  Teo, Hoong Chen;  Hussey, Karen;  Lechner, Alex Mark
收藏  |  浏览/下载:7/0  |  提交时间:2020/05/13
Impaired cell fate through gain-of-function mutations in a chromatin reader 期刊论文
NATURE, 2020, 577 (7788) : 121-+
作者:  Wan, Liling;  Chong, Shasha;  Xuan, Fan;  Liang, Angela;  Cui, Xiaodong;  Gates, Leah;  Carroll, Thomas S.;  Li, Yuanyuan;  Feng, Lijuan;  Chen, Guochao;  Wang, Shu-Ping;  Ortiz, Michael V.;  Daley, Sara K.;  Wang, Xiaolu;  Xuan, Hongwen;  Kentsis, Alex;  Muir, Tom W.;  Roeder, Robert G.;  Li, Haitao;  Li, Wei;  Tjian, Robert;  Wen, Hong;  Allis, C. David
收藏  |  浏览/下载:10/0  |  提交时间:2020/07/03

Modifications of histone proteins have essential roles in normal development and human disease. Recognition of modified histones by '  reader'  proteins is a key mechanism that mediates the function of histone modifications, but how the dysregulation of these readers might contribute to disease remains poorly understood. We previously identified the ENL protein as a reader of histone acetylation via its YEATS domain, linking it to the expression of cancer-driving genes in acute leukaemia1. Recurrent hotspot mutations have been found in the ENL YEATS domain in Wilms tumour2,3, the most common type of paediatric kidney cancer. Here we show, using human and mouse cells, that these mutations impair cell-fate regulation by conferring gain-of-function in chromatin recruitment and transcriptional control. ENL mutants induce gene-expression changes that favour a premalignant cell fate, and, in an assay for nephrogenesis using murine cells, result in undifferentiated structures resembling those observed in human Wilms tumour. Mechanistically, although bound to largely similar genomic loci as the wild-type protein, ENL mutants exhibit increased occupancy at a subset of targets, leading to a marked increase in the recruitment and activity of transcription elongation machinery that enforces active transcription from target loci. Furthermore, ectopically expressed ENL mutants exhibit greater self-association and form discrete and dynamic nuclear puncta that are characteristic of biomolecular hubs consisting of local high concentrations of regulatory factors. Such mutation-driven ENL self-association is functionally linked to enhanced chromatin occupancy and gene activation. Collectively, our findings show that hotspot mutations in a chromatinreader domain drive self-reinforced recruitment, derailing normal cell-fate control during development and leading to an oncogenic outcome.


  
A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds 期刊论文
NATURE, 2020, 580 (7803) : 409-+
作者:  Al-Shayeb, Basem;  Sachdeva, Rohan;  Chen, Lin-Xing;  Ward, Fred;  Munk, Patrick;  Devoto, Audra;  Castelle, Cindy J.;  Olm, Matthew R.;  Bouma-Gregson, Keith;  Amano, Yuki;  He, Christine;  Meheust, Raphael;  Brooks, Brandon;  Thomas, Alex;  Levy, Adi;  Matheus-Carnevali, Paula;  Sun, Christine;  Goltsman, Daniela S. A.;  Borton, Mikayla A.;  Sharrar, Allison;  Jaffe, Alexander L.;  Nelson, Tara C.;  Kantor, Rose;  Keren, Ray;  Lane, Katherine R.;  Farag, Ibrahim F.;  Lei, Shufei;  Finstad, Kari;  Amundson, Ronald;  Anantharaman, Karthik;  Zhou, Jinglie;  Probst, Alexander J.;  Power, Mary E.;  Tringe, Susannah G.;  Li, Wen-Jun;  Wrighton, Kelly;  Harrison, Sue;  Morowitz, Michael;  Relman, David A.;  Doudna, Jennifer A.;  Lehours, Anne-Catherine;  Warren, Lesley;  Cate, Jamie H. D.;  Santini, Joanne M.;  Banfield, Jillian F.
收藏  |  浏览/下载:34/0  |  提交时间:2020/07/03

Mycobacterium tuberculosis (Mtb) is an obligate human pathogen and the causative agent of tuberculosis(1-3). Although Mtb can synthesize vitamin B-12 (cobalamin) de novo, uptake of cobalamin has been linked to pathogenesis of tuberculosis2. Mtb does not encode any characterized cobalamin transporter(4-6)  however, the gene rv1819c was found to be essential for uptake of cobalamin(1). This result is difficult to reconcile with the original annotation of Rv1819c as a protein implicated in the transport of antimicrobial peptides such as bleomycin(7). In addition, uptake of cobalamin seems inconsistent with the amino acid sequence, which suggests that Rv1819c has a bacterial ATP-binding cassette (ABC)-exporter fold1. Here, we present structures of Rv1819c, which reveal that the protein indeed contains the ABC-exporter fold, as well as a large water-filled cavity of about 7,700 angstrom(3), which enables the protein to transport the unrelated hydrophilic compounds bleomycin and cobalamin. On the basis of these structures, we propose that Rv1819c is a multi-solute transporter for hydrophilic molecules, analogous to the multidrug exporters of the ABC transporter family, which pump out structurally diverse hydrophobic compounds from cells(8-11).