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Proteome-wide effects of naphthalene-derived secondary organic aerosol in BEAS-2B cells are caused by short-lived unsaturated carbonyls 期刊论文
Proceedings of the National Academy of Sciences, 2020
作者:  Jiajun Han;  Shunyao Wang;  Kirsten Yeung;  Diwen Yang;  Wen Gu;  Zhiyuan Ma;  Jianxian Sun;  Xiaomin Wang;  Chung-Wai Chow;  Arthur W. H. Chan;  Hui Peng
收藏  |  浏览/下载:8/0  |  提交时间:2020/10/12
A dominant autoinflammatory disease caused by non-cleavable variants of RIPK1 期刊论文
NATURE, 2020, 577 (7788) : 109-+
作者:  Tao, Panfeng;  Sun, Jinqiao;  Wu, Zheming;  Wang, Shihao;  Wang, Jun;  Li, Wanjin;  Pan, Heling;  Bai, Renkui;  Zhang, Jiahui;  Wang, Ying;  Lee, Pui Y.;  Ying, Wenjing;  Zhou, Qinhua;  Hou, Jia;  Wang, Wenjie;  Sun, Bijun;  Yang, Mi;  Liu, Danru;  Fang, Ran;  Han, Huan;  Yang, Zhaohui;  Huang, Xin;  Li, Haibo;  Deuitch, Natalie;  Zhang, Yuan;  Dissanayake, Dilan;  Haude, Katrina;  McWalter, Kirsty;  Roadhouse, Chelsea;  MacKenzie, Jennifer J.;  Laxer, Ronald M.;  Aksentijevich, Ivona;  Yu, Xiaomin;  Wang, Xiaochuan;  Yuan, Junying;  Zhou, Qing
收藏  |  浏览/下载:21/0  |  提交时间:2020/07/03

Activation of RIPK1 controls TNF-mediated apoptosis, necroptosis and inflammatory pathways(1). Cleavage of human and mouse RIPK1 after residues D324 and D325, respectively, by caspase-8 separates the RIPK1 kinase domain from the intermediate and death domains. The D325A mutation in mouse RIPK1 leads to embryonic lethality during mouse development(2,3). However, the functional importance of blocking caspase-8-mediated cleavage of RIPK1 on RIPK1 activation in humans is unknown. Here we identify two families with variants in RIPK1 (D324V and D324H) that lead to distinct symptoms of recurrent fevers and lymphadenopathy in an autosomaldominant manner. Impaired cleavage of RIPK1 D324 variants by caspase-8 sensitized patients'  peripheral blood mononuclear cells to RIPK1 activation, apoptosis and necroptosis induced by TNF. The patients showed strong RIPK1-dependent activation of inflammatory signalling pathways and overproduction of inflammatory cytokines and chemokines compared with unaffected controls. Furthermore, we show that expression of the RIPK1 mutants D325V or D325H in mouse embryonic fibroblasts confers not only increased sensitivity to RIPK1 activation-mediated apoptosis and necroptosis, but also induction of pro-inflammatory cytokines such as IL-6 and TNF. By contrast, patient-derived fibroblasts showed reduced expression of RIPK1 and downregulated production of reactive oxygen species, resulting in resistance to necroptosis and ferroptosis. Together, these data suggest that human non-cleavable RIPK1 variants promote activation of RIPK1, and lead to an autoinflammatory disease characterized by hypersensitivity to apoptosis and necroptosis and increased inflammatory response in peripheral blood mononuclear cells, as well as a compensatory mechanism to protect against several pro-death stimuli in fibroblasts.


  
The evolutionary history of 2,658 cancers 期刊论文
NATURE, 2020, 578 (7793) : 122-+
作者:  Tao, Panfeng;  Sun, Jinqiao;  Wu, Zheming;  Wang, Shihao;  Wang, Jun;  Li, Wanjin;  Pan, Heling;  Bai, Renkui;  Zhang, Jiahui;  Wang, Ying;  Lee, Pui Y.;  Ying, Wenjing;  Zhou, Qinhua;  Hou, Jia;  Wang, Wenjie;  Sun, Bijun;  Yang, Mi;  Liu, Danru;  Fang, Ran;  Han, Huan;  Yang, Zhaohui;  Huang, Xin;  Li, Haibo;  Deuitch, Natalie;  Zhang, Yuan;  Dissanayake, Dilan;  Haude, Katrina;  McWalter, Kirsty;  Roadhouse, Chelsea;  MacKenzie, Jennifer J.;  Laxer, Ronald M.;  Aksentijevich, Ivona;  Yu, Xiaomin;  Wang, Xiaochuan;  Yuan, Junying;  Zhou, Qing
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

Cancer develops through a process of somatic evolution(1,2). Sequencing data from a single biopsy represent a snapshot of this process that can reveal the timing of specific genomic aberrations and the changing influence of mutational processes(3). Here, by whole-genome sequencing analysis of 2,658 cancers as part of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA)(4), we reconstruct the life history and evolution of mutational processes and driver mutation sequences of 38 types of cancer. Early oncogenesis is characterized by mutations in a constrained set of driver genes, and specific copy number gains, such as trisomy 7 in glioblastoma and isochromosome 17q in medulloblastoma. The mutational spectrum changes significantly throughout tumour evolution in 40% of samples. A nearly fourfold diversification of driver genes and increased genomic instability are features of later stages. Copy number alterations often occur in mitotic crises, and lead to simultaneous gains of chromosomal segments. Timing analyses suggest that driver mutations often precede diagnosis by many years, if not decades. Together, these results determine the evolutionary trajectories of cancer, and highlight opportunities for early cancer detection.


  
A genome-wide association study identifies six novel risk loci for primary biliary cholangitis 期刊论文
NATURE COMMUNICATIONS, 2017, 8
作者:  Qiu, Fang;  Tang, Ruqi;  Zuo, Xianbo;  Shi, Xingjuan;  Wei, Yiran;  Zheng, Xiaodong;  Dai, Yaping;  Gong, Yuhua;  Wang, Lan;  Xu, Ping;  Zhu, Xiang;  Wu, Jian;  Han, Chongxu;  Gao, Yueqiu;  Zhang, Kui;  Jiang, Yuzhang;  Zhou, Jianbo;  Shao, Youlin;  Hu, Zhigang;  Tian, Ye;  Zhang, Haiyan;  Dai, Na;  Liu, Lei;  Wu, Xudong;  Zhao, Weifeng;  Zhang, Xiaomin;  Zang, Zhidong;  Nie, Jinshan;  Sun, Weihao;  Zhao, Yi;  Mao, Yuan;  Jiang, Po;  Ji, Hualiang;  Dong, Qing;  Li, Junming;  Li, Zhenzhong;  Bai, Xinli;  Li, Li;  Lin, Maosong;  Dong, Ming;  Li, Jinxin;  Zhu, Ping;  Wang, Chan;  Zhang, Yanqiu;  Jiang, Peng;  Wang, Yujue;  Jawed, Rohil;  Xu, Jing;  Zhang, Yu;  Wang, Qixia;  Yang, Yue;  Yang, Fan;  Lian, Min;  Jiang, Xiang;  Xiao, Xiao;  Li, Yanmei;  Fang, Jingyuan;  Qiu, Dekai;  Zhu, Zhen;  Qiu, Hong;  Zhang, Jianqiong;  Tian, Wenyan;  Chen, Sufang;  Jiang, Ling;  Ji, Bing;  Li, Ping;  Chen, Guochang;  Wu, Tianxue;  Sun, Yan;  Yu, Jianjiang;  Tang, Huijun;  He, Michun;  Xia, Min;  Pei, Hao;  Huang, Lihua;  Qing, Zhuye;  Wu, Jianfang;  Huang, Qinghai;  Han, Junhai;  Xie, Wei;  Sun, Zhongsheng;  Guo, Jian;  He, Gengsheng;  Gershwin, M. Eric;  Lian, Zhexiong;  Liu, Xiang;  Seldin, Michael F.;  Liu, Xiangdong;  Chen, Weichang;  Ma, Xiong
收藏  |  浏览/下载:17/0  |  提交时间:2019/11/27
On Polleward Migration of Tropical Cyclone Occurrence Over the Western North Pacific Ocean 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (15) : 9110-9117
作者:  Sun, Jia;  Wang, Dingqi;  Hu, Xiaomin;  Ling, Zheng;  Wang, Lu
收藏  |  浏览/下载:14/0  |  提交时间:2019/11/27
Understanding the catalytic role of oxalic acid in SO3 hydration to form H2SO4 in the atmosphere 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2019, 19 (5) : 2833-2844
作者:  Lv, Guochun;  Sun, Xiaomin;  Zhang, Chenxi;  Li, Mei
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
Regional drought shifts (1710-2010) in East Central Asia and linkages with atmospheric circulation recorded in tree-ring O-18 期刊论文
CLIMATE DYNAMICS, 2019, 52: 713-727
作者:  Xu, Guobao;  Liu, Xiaohong;  Trouet, Valerie;  Treydte, Kerstin;  Wu, Guoju;  Chen, Tuo;  Sun, Weizhen;  An, Wenling;  Wang, Wenzhi;  Zeng, Xiaomin;  Qin, Dahe
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
Tree rings  Stable oxygen isotopes  Drought reconstruction  Eastern Central Asia  SPEI  
Stratosphere Perturbed by the 2011 Mw9.0 Tohoku Earthquake 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2018, 45 (19) : 10050-10056
作者:  Yan, Xiangxiang;  Sun, Yangyi;  Yu, Tao;  Liu, Jann-Yenq;  Qi, Yifan;  Xia, Chunliang;  Zuo, Xiaomin;  Yang, Na
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
Exposure to Polycyclic Aromatic Hydrocarbons and Accelerated DNA Methylation Aging 期刊论文
ENVIRONMENTAL HEALTH PERSPECTIVES, 2018, 126 (6)
作者:  Li, Jun;  Zhu, Xiaoyan;  Yu, Kuai;  Jiang, Haijing;  Zhang, Yizhi;  Wang, Biqi;  Liu, Xuezhen;  Deng, Siyun;  Hu, Jie;  Deng, Qifei;  Sun, Huizhen;  Guo, Huan;  Zhang, Xiaomin;  Chen, Weihong;  Yuan, Jing;  He, Meian;  Bai, Yansen;  Han, Xu;  Liu, Bing;  Liu, Chuanyao;  Guo, Yanjun;  Zhang, Bing;  Zhang, Zhihong;  Hu, Frank B.;  Gao, Wenjing;  Li, Liming;  Lathrop, Mark;  Laprise, Catherine;  Liang, Liming;  Wu, Tanchun
收藏  |  浏览/下载:20/0  |  提交时间:2019/04/09
Regional variation in the temperature sensitivity of soil organic matter decomposition in China's forests and grasslands 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (8)
作者:  Liu, Yuan;  He, Nianpeng;  Zhu, Jianxing;  Xu, Li;  Yu, Guirui;  Niu, Shuli;  Sun, Xiaomin;  Wen, Xuefa
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
decomposition  forest  grassland  regional variation  soil organic matter  temperature sensitivity