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Ancient genomes reveal tropical bovid species in the Tibetan Plateau contributed to the prevalence of hunting game until the late Neolithic 期刊论文
Proceedings of the National Academy of Sciences, 2020
作者:  Ningbo Chen;  Lele Ren;  Linyao Du;  Jiawen Hou;  Victoria E. Mullin;  Duo Wu;  Xueye Zhao;  Chunmei Li;  Jiahui Huang;  Xuebin Qi;  Marco Rosario Capodiferro;  Alessandro Achilli;  Chuzhao Lei;  Fahu Chen;  Bing Su;  Guanghui Dong;  Xiaoming Zhang
收藏  |  浏览/下载:9/0  |  提交时间:2020/10/26
Understanding uneven land subsidence in Beijing, China, using a novel combination of geophysical prospecting and InSAR 期刊论文
Geophysical Research Letters, 2020
作者:  Lin Guo;  Huili Gong;  Jiwei Li;  Lin Zhu;  Aimin Xue;  Lin Liao;  Ying Sun;  Yongsheng Li;  Zhenxin Zhang;  Leyin Hu;  Mingliang Gao;  Chaofan Zhou;  Rui Cheng;  Jiahui Zhou
收藏  |  浏览/下载:8/0  |  提交时间:2020/08/18
Plant Trait Networks: Improved Resolution of the Dimensionality of Adaptation 期刊论文
Trends in Ecology & Evolution\, 2020
作者:  Nianpeng He:Ying Li:Congcong Liu:Li Xu:Mingxu Li:Jiahui Zhang:Jinsheng He:Zhiyao Tang:Xingguo Han:Qing Ye:Chunwang Xiao:Qiang Yu:Shirong Liu:Wei Sun:Shuli Niu:Shenggong Li:Lawren Sack:Guirui Yu
收藏  |  浏览/下载:12/0  |  提交时间:2020/06/29
A dominant autoinflammatory disease caused by non-cleavable variants of RIPK1 期刊论文
NATURE, 2020, 577 (7788) : 109-+
作者:  Tao, Panfeng;  Sun, Jinqiao;  Wu, Zheming;  Wang, Shihao;  Wang, Jun;  Li, Wanjin;  Pan, Heling;  Bai, Renkui;  Zhang, Jiahui;  Wang, Ying;  Lee, Pui Y.;  Ying, Wenjing;  Zhou, Qinhua;  Hou, Jia;  Wang, Wenjie;  Sun, Bijun;  Yang, Mi;  Liu, Danru;  Fang, Ran;  Han, Huan;  Yang, Zhaohui;  Huang, Xin;  Li, Haibo;  Deuitch, Natalie;  Zhang, Yuan;  Dissanayake, Dilan;  Haude, Katrina;  McWalter, Kirsty;  Roadhouse, Chelsea;  MacKenzie, Jennifer J.;  Laxer, Ronald M.;  Aksentijevich, Ivona;  Yu, Xiaomin;  Wang, Xiaochuan;  Yuan, Junying;  Zhou, Qing
收藏  |  浏览/下载:21/0  |  提交时间:2020/07/03

Activation of RIPK1 controls TNF-mediated apoptosis, necroptosis and inflammatory pathways(1). Cleavage of human and mouse RIPK1 after residues D324 and D325, respectively, by caspase-8 separates the RIPK1 kinase domain from the intermediate and death domains. The D325A mutation in mouse RIPK1 leads to embryonic lethality during mouse development(2,3). However, the functional importance of blocking caspase-8-mediated cleavage of RIPK1 on RIPK1 activation in humans is unknown. Here we identify two families with variants in RIPK1 (D324V and D324H) that lead to distinct symptoms of recurrent fevers and lymphadenopathy in an autosomaldominant manner. Impaired cleavage of RIPK1 D324 variants by caspase-8 sensitized patients'  peripheral blood mononuclear cells to RIPK1 activation, apoptosis and necroptosis induced by TNF. The patients showed strong RIPK1-dependent activation of inflammatory signalling pathways and overproduction of inflammatory cytokines and chemokines compared with unaffected controls. Furthermore, we show that expression of the RIPK1 mutants D325V or D325H in mouse embryonic fibroblasts confers not only increased sensitivity to RIPK1 activation-mediated apoptosis and necroptosis, but also induction of pro-inflammatory cytokines such as IL-6 and TNF. By contrast, patient-derived fibroblasts showed reduced expression of RIPK1 and downregulated production of reactive oxygen species, resulting in resistance to necroptosis and ferroptosis. Together, these data suggest that human non-cleavable RIPK1 variants promote activation of RIPK1, and lead to an autoinflammatory disease characterized by hypersensitivity to apoptosis and necroptosis and increased inflammatory response in peripheral blood mononuclear cells, as well as a compensatory mechanism to protect against several pro-death stimuli in fibroblasts.


  
Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells 期刊论文
NATURE, 2020, 577 (7792) : 676-+
作者:  Zhao, Ruozhu;  Chen, Xin;  Ma, Weiwei;  Zhang, Jinyu;  Guo, Jie;  Zhong, Xiu;  Yao, Jiacheng;  Sun, Jiahui;  Rubinfien, Julian;  Zhou, Xuyu;  Wang, Jianbin;  Qi, Hai
收藏  |  浏览/下载:11/0  |  提交时间:2020/07/03

Empirical and anecdotal evidence has associated stress with accelerated hair greying (formation of unpigmented hairs)(1,2), but so far there has been little scientific validation of this link. Here we report that, in mice, acute stress leads to hair greying through the fast depletion of melanocyte stem cells. Using a combination of adrenalectomy, denervation, chemogenetics(3,4), cell ablation and knockout of the adrenergic receptor specifically in melanocyte stem cells, we find that the stress-induced loss of melanocyte stem cells is independent of immune attack or adrenal stress hormones. Instead, hair greying results from activation of the sympathetic nerves that innervate the melanocyte stem-cell niche. Under conditions of stress, the activation of these sympathetic nerves leads to burst release of the neurotransmitter noradrenaline (also known as norepinephrine). This causes quiescent melanocyte stem cells to proliferate rapidly, and is followed by their differentiation, migration and permanent depletion from the niche. Transient suppression of the proliferation of melanocyte stem cells prevents stress-induced hair greying. Our study demonstrates that neuronal activity that is induced by acute stress can drive a rapid and permanent loss of somatic stem cells, and illustrates an example in which the maintenance of somatic stem cells is directly influenced by the overall physiological state of the organism.


Stress induces hair greying in mice through depletion of melanocyte stem cells, which is mediated by the activation of sympathetic nerves rather than through immune attack or adrenal stress hormones.


  
The evolutionary history of 2,658 cancers 期刊论文
NATURE, 2020, 578 (7793) : 122-+
作者:  Tao, Panfeng;  Sun, Jinqiao;  Wu, Zheming;  Wang, Shihao;  Wang, Jun;  Li, Wanjin;  Pan, Heling;  Bai, Renkui;  Zhang, Jiahui;  Wang, Ying;  Lee, Pui Y.;  Ying, Wenjing;  Zhou, Qinhua;  Hou, Jia;  Wang, Wenjie;  Sun, Bijun;  Yang, Mi;  Liu, Danru;  Fang, Ran;  Han, Huan;  Yang, Zhaohui;  Huang, Xin;  Li, Haibo;  Deuitch, Natalie;  Zhang, Yuan;  Dissanayake, Dilan;  Haude, Katrina;  McWalter, Kirsty;  Roadhouse, Chelsea;  MacKenzie, Jennifer J.;  Laxer, Ronald M.;  Aksentijevich, Ivona;  Yu, Xiaomin;  Wang, Xiaochuan;  Yuan, Junying;  Zhou, Qing
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

Cancer develops through a process of somatic evolution(1,2). Sequencing data from a single biopsy represent a snapshot of this process that can reveal the timing of specific genomic aberrations and the changing influence of mutational processes(3). Here, by whole-genome sequencing analysis of 2,658 cancers as part of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA)(4), we reconstruct the life history and evolution of mutational processes and driver mutation sequences of 38 types of cancer. Early oncogenesis is characterized by mutations in a constrained set of driver genes, and specific copy number gains, such as trisomy 7 in glioblastoma and isochromosome 17q in medulloblastoma. The mutational spectrum changes significantly throughout tumour evolution in 40% of samples. A nearly fourfold diversification of driver genes and increased genomic instability are features of later stages. Copy number alterations often occur in mitotic crises, and lead to simultaneous gains of chromosomal segments. Timing analyses suggest that driver mutations often precede diagnosis by many years, if not decades. Together, these results determine the evolutionary trajectories of cancer, and highlight opportunities for early cancer detection.


  
Ecosystem Traits Linking Functional Traits to Macroecology 期刊论文
TRENDS IN ECOLOGY & EVOLUTION, 2019, 34 (3) : 200-210
作者:  He, Nianpeng;  Liu, Congcong;  Piao, Shilong;  Sack, Lawren;  Xu, Li;  Luo, Yiqi;  He, Jinsheng;  Han, Xingguo;  Zhou, Guangsheng;  Zhou, Xuhui;  Lin, Yi;  Yu, Qiang;  Liu, Shirong;  Sun, Wei;  Niu, Shuli;  Li, Shenggong;  Zhang, Jiahui;  Yu, Guirui
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
Anomalous holiday precipitation over southern China 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2018, 18 (22) : 16775-16791
作者:  Zhang, Jiahui;  Gong, Dao-Yi;  Mao, Rui;  Yang, Jing;  Zhang, Ziyin;  Qian, Yun
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09
Estimation of carbon sequestration in China's forests induced by atmospheric wet nitrogen deposition using the principles of ecological stoichiometry 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2017, 12 (11)
作者:  Zhu, Jianxing;  He, Nianpeng;  Zhang, Jiahui;  Wang, Qiufeng;  Zhao, Ning;  Jia, Yanlong;  Ge, Jianping;  Yu, Guirui
收藏  |  浏览/下载:6/0  |  提交时间:2019/04/09
C:N ratio  C sequestration rate  ecological stoichiometric homeostasis  nitrogen retention  nitrogen use efficiency