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Tobacco smoking and somatic mutations in human bronchial epithelium 期刊论文
NATURE, 2020, 578 (7794) : 266-+
作者:  Sharma, Nikhil;  Flaherty, Kali;  Lezgiyeva, Karina;  Wagner, Daniel E.;  Klein, Allon M.;  Ginty, David D.
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

Whole-genome sequencing of normal bronchial epithelium from 16 individuals shows that tobacco smoking increases genomic heterogeneity, mutational burden and driver mutations, whereas stopping smoking promotes replenishment of the epithelium with near-normal cells.


Tobacco smoking causes lung cancer(1-3), a process that is driven by more than 60 carcinogens in cigarette smoke that directly damage and mutate DNA(4,5). The profound effects of tobacco on the genome of lung cancer cells are well-documented(6-10), but equivalent data for normal bronchial cells are lacking. Here we sequenced whole genomes of 632 colonies derived from single bronchial epithelial cells across 16 subjects. Tobacco smoking was the major influence on mutational burden, typically adding from 1,000 to 10,000 mutations per cell  massively increasing the variance both within and between subjects  and generating several distinct mutational signatures of substitutions and of insertions and deletions. A population of cells in individuals with a history of smoking had mutational burdens that were equivalent to those expected for people who had never smoked: these cells had less damage from tobacco-specific mutational processes, were fourfold more frequent in ex-smokers than current smokers and had considerably longer telomeres than their more-mutated counterparts. Driver mutations increased in frequency with age, affecting 4-14% of cells in middle-aged subjects who had never smoked. In current smokers, at least 25% of cells carried driver mutations and 0-6% of cells had two or even three drivers. Thus, tobacco smoking increases mutational burden, cell-to-cell heterogeneity and driver mutations, but quitting promotes replenishment of the bronchial epithelium from mitotically quiescent cells that have avoided tobacco mutagenesis.


  
Systematic generation of biophysically detailed models for diverse cortical neuron types 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Gouwens, Nathan W.;  Berg, Jim;  Feng, David;  Sorensen, Staci A.;  Zeng, Hongkui;  Hawrylycz, Michael J.;  Koch, Christof;  Arkhipov, Anton
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
Non-coding cis-element of Period2 is essential for maintaining organismal circadian behaviour and body temperature rhythmicity 期刊论文
NATURE COMMUNICATIONS, 2019, 10
作者:  Doi, Masao;  Shimatani, Hiroyuki;  Atobe, Yuta;  Murai, Iori;  Hayashi, Hida;  Takahashi, Yukari;  Fustin, Jean-Michel;  Yamaguchi, Yoshiaki;  Kiyonari, Hiroshi;  Koike, Nobuya;  Yagita, Kazuhiro;  Lee, Choogon;  Abe, Manabu;  Sakimura, Kenji;  Okamura, Hitoshi
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
Nuclear positioning facilitates amoeboid migration along the path of least resistance 期刊论文
NATURE, 2019, 568 (7753) : 546-+
作者:  Renkawitz, Joerg;  Kopf, Aglaja;  Stopp, Julian;  de Vries, Ingrid;  Driscoll, Meghan K.;  Merrin, Jack;  Hauschild, Robert;  Welf, Erik S.;  Danuser, Gaudenz;  Fiolka, Reto;  Sixt, Michael
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
Apoptosis propagates through the cytoplasm as trigger waves 期刊论文
SCIENCE, 2018, 361 (6402) : 607-612
作者:  Cheng, Xianrui;  Ferrell, James E., Jr.
收藏  |  浏览/下载:0/0  |  提交时间:2019/11/27
Fractal modes and multi-beam generation from hybrid microlaser resonators 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Rivera, Jose A.;  Galvin, Thomas C.;  Steinforth, Austin W.;  Eden, J. Gary
收藏  |  浏览/下载:0/0  |  提交时间:2019/11/27
Self-organization and progenitor targeting generate stable patterns in planarian regeneration 期刊论文
SCIENCE, SCIENCE, 2018, 2018, 360, 360 (6387) : 404-+, 404-+
作者:  Atabay, Kutay Deniz;  LoCascio, Samuel A.;  de Hoog, Thom;  Reddien, PeterW.
收藏  |  浏览/下载:3/0  |  提交时间:2019/11/27
Redox-sensitive alteration of replisome architecture safeguards genome integrity 期刊论文
SCIENCE, 2017, 358 (6364) : 797-802
作者:  Somyajit, Kumar;  Gupta, Rajat;  Sedlackova, Hana;  Neelsen, Kai John;  Ochs, Fena;  Rask, Maj-Britt;  Choudhary, Chunaram;  Lukas, Jiri
收藏  |  浏览/下载:0/0  |  提交时间:2019/11/27
Fertile offspring from sterile sex chromosome trisomic mice 期刊论文
SCIENCE, 2017, 357 (6354) : 932-934
作者:  Hirota, Takayuki;  Ohta, Hiroshi;  Powell, Benjamin E.;  Mahadevaiah, Shantha K.;  Ojarikre, Obah A.;  Saitou, Mitinori;  Turner, James M. A.
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity 期刊论文
SCIENCE, 2017, 356 (6335) : 309-311
作者:  Bergmiller, Tobias;  Andersson, Anna M. C.;  Tomasek, Kathrin;  Balleza, Enrique;  Kiviet, Daniel J.;  Hauschild, Robert;  Tkacik, Gasper;  Guet, Calin C.
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27