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Are multiseasonal forecasts of atmospheric rivers possible? 期刊论文
Geophysical Research Letters, 2021
作者:  Kai-Chih Tseng;  C. Nathaniel;  B. Sarah;  Thomas L;  Feiyu Lu;  William;  Andrew Ts. Wittenberg;  Anthony J. Rosati;  Liping Zhang;  Colleen McHugh;  Xiaosong Yang;  Matthew Harrison;  Fanrong Zeng;  Gan Zhang;  Hiroyuki Murakami;  Mitchell Bushuk;  Liwei Jia
收藏  |  浏览/下载:8/0  |  提交时间:2021/08/30
Radiation-related genomic profile of papillary thyroid carcinoma after the Chernobyl accident 期刊论文
Science, 2021
作者:  Lindsay M. Morton;  Danielle M. Karyadi;  Chip Stewart;  Tetiana I. Bogdanova;  Eric T. Dawson;  Mia K. Steinberg;  Jieqiong Dai;  Stephen W. Hartley;  Sara J. Schonfeld;  Joshua N. Sampson;  Yosef E. Maruvka;  Vidushi Kapoor;  Dale A. Ramsden;  Juan Carvajal-Garcia;  Charles M. Perou;  Joel S. Parker;  Marko Krznaric;  Meredith Yeager;  Joseph F. Boland;  Amy Hutchinson;  Belynda D. Hicks;  Casey L. Dagnall;  Julie M. Gastier-Foster;  Jay Bowen;  Olivia Lee;  Mitchell J. Machiela;  Elizabeth K. Cahoon;  Alina V. Brenner;  Kiyohiko Mabuchi;  Vladimir Drozdovitch;  Sergii Masiuk;  Mykola Chepurny;  Liudmyla Yu. Zurnadzhy;  Maureen Hatch;  Amy Berrington de Gonzalez;  Gerry A. Thomas;  Mykola D. Tronko;  Gad Getz;  Stephen J. Chanock
收藏  |  浏览/下载:15/0  |  提交时间:2021/05/21
Extensive heterogeneity in somatic mutation and selection in the human bladder 期刊论文
Science, 2020
作者:  Andrew R. J. Lawson;  Federico Abascal;  Tim H. H. Coorens;  Yvette Hooks;  Laura O’Neill;  Calli Latimer;  Keiran Raine;  Mathijs A. Sanders;  Anne Y. Warren;  Krishnaa T. A. Mahbubani;  Bethany Bareham;  Timothy M. Butler;  Luke M. R. Harvey;  Alex Cagan;  Andrew Menzies;  Luiza Moore;  Alexandra J. Colquhoun;  William Turner;  Benjamin Thomas;  Vincent Gnanapragasam;  Nicholas Williams;  Doris M. Rassl;  Harald Vöhringer;  Sonia Zumalave;  Jyoti Nangalia;  José M. C. Tubío;  Moritz Gerstung;  Kourosh Saeb-Parsy;  Michael R. Stratton;  Peter J. Campbell;  Thomas J. Mitchell;  Iñigo Martincorena
收藏  |  浏览/下载:19/0  |  提交时间:2020/10/12
An astronomically dated record of Earth’s climate and its predictability over the last 66 million years 期刊论文
Science, 2020
作者:  Thomas Westerhold;  Norbert Marwan;  Anna Joy Drury;  Diederik Liebrand;  Claudia Agnini;  Eleni Anagnostou;  James S. K. Barnet;  Steven M. Bohaty;  David De Vleeschouwer;  Fabio Florindo;  Thomas Frederichs;  David A. Hodell;  Ann E. Holbourn;  Dick Kroon;  Vittoria Lauretano;  Kate Littler;  Lucas J. Lourens;  Mitchell Lyle;  Heiko Pälike;  Ursula Röhl;  Jun Tian;  Roy H. Wilkens;  Paul A. Wilson;  James C. Zachos
收藏  |  浏览/下载:15/0  |  提交时间:2020/09/14
Tree planting in organic soils does not result in net carbon sequestration on decadal timescales 期刊论文
Global Change Biology, 2020
作者:  Nina L. Friggens;  Alison J. Hester;  Ruth J. Mitchell;  Thomas C. Parker;  Jens‐;  Arne Subke;  Philip A. Wookey
收藏  |  浏览/下载:6/0  |  提交时间:2020/08/09
Femtosecond-to-millisecond structural changes in a light-driven sodium pump 期刊论文
NATURE, 2020, 583 (7815) : 314-+
作者:  Moore, Luiza;  Leongamornlert, Daniel;  Coorens, Tim H. H.;  Sanders, Mathijs A.;  Ellis, Peter;  Dentro, Stefan C.;  Dawson, Kevin J.;  Butler, Tim;  Rahbari, Raheleh;  Mitchell, Thomas J.;  Maura, Francesco;  Nangalia, Jyoti;  Tarpey, Patrick S.;  Brunner, Simon F.;  Lee-Six, Henry;  Hooks, Yvette;  Moody, Sarah;  Mahbubani, Krishnaa T.;  Jimenez-Linan, Mercedes;  Brosens, Jan J.;  Iacobuzio-Donahue, Christine A.;  Martincorena, Inigo;  Saeb-Parsy, Kourosh;  Campbell, Peter J.;  Stratton, Michael R.
收藏  |  浏览/下载:17/0  |  提交时间:2020/07/03

Light-driven sodium pumps actively transport small cations across cellular membranes(1). These pumps are used by microorganisms to convert light into membrane potential and have become useful optogenetic tools with applications in neuroscience. Although the resting state structures of the prototypical sodium pump Krokinobacter eikastus rhodopsin 2 (KR2) have been solved(2,3), it is unclear how structural alterations overtime allow sodium to be translocated against a concentration gradient. Here, using the Swiss X-ray Free Electron Laser(4), we have collected serial crystallographic data at ten pump-probe delays from femtoseconds to milliseconds. High-resolution structural snapshots throughout the KR2 photocycle show how retinal isomerization is completed on the femtosecond timescale and changes the local structure of the binding pocket in the early nanoseconds. Subsequent rearrangements and deprotonation of the retinal Schiff base open an electrostatic gate in microseconds. Structural and spectroscopic data, in combination with quantum chemical calculations, indicate that a sodium ion bind stransiently close to the retinal within one millisecond. In the last structural intermediate, at 20 milliseconds after activation, we identified a potential second sodium-binding site close to the extracellular exit. These results provide direct molecular insight into the dynamics of active cation transport across biological membranes.


  
Live-animal imaging of native haematopoietic stem and progenitor cells 期刊论文
NATURE, 2020, 578 (7794) : 278-+
作者:  Gerstung, Moritz;  Jolly, Clemency;  Leshchiner, Ignaty;  Dentro, Stefan C.;  Gonzalez, Santiago;  Rosebrock, Daniel;  Mitchell, Thomas J.;  Rubanova, Yulia;  Anur, Pavana;  Yu, Kaixian;  Tarabichi, Maxime;  Deshwar, Amit;  Wintersinger, Jeff;  Kleinheinz, Kortine;  Vazquez-Garcia, Ignacio;  Haase, Kerstin;  Jerman, Lara;  Sengupta, Subhajit;  Macintyre, Geoff;  Malikic, Salem;  Donmez, Nilgun;  Livitz, Dimitri G.;  Cmero, Marek;  Demeulemeester, Jonas;  Schumacher, Steven;  Fan, Yu;  Yao, Xiaotong;  Lee, Juhee;  Schlesner, Matthias;  Boutros, Paul C.;  Bowtell, David D.;  Zhu, Hongtu;  Getz, Gad;  Imielinski, Marcin;  Beroukhim, Rameen;  Sahinalp, S. Cenk;  Ji, Yuan;  Peifer, Martin;  Markowetz, Florian;  Mustonen, Ville;  Yuan, Ke;  Wang, Wenyi;  Morris, Quaid D.;  Spellman, Paul T.;  Wedge, David C.;  Van Loo, Peter;  Deshwar, Amit G.;  Adams, David J.;  Campbell, Peter J.;  Cao, Shaolong;  Christie, Elizabeth L.;  Cun, Yupeng;  Dawson, Kevin J.;  Drews, Ruben M.;  Eils, Roland;  Fittall, Matthew;  Garsed, Dale W.;  Ha, Gavin;  Lee-Six, Henry;  Martincorena, Inigo;  Oesper, Layla;  Peto, Myron;  Raphael, Benjamin J.;  Salcedo, Adriana;  Shi, Ruian;  Shin, Seung Jun;  Spiro, Oliver;  Stein, Lincoln D.;  Vembu, Shankar;  Wheeler, David A.;  Yang, Tsun-Po
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The biology of haematopoietic stem cells (HSCs) has predominantly been studied under transplantation conditions(1,2). It has been particularly challenging to study dynamic HSC behaviour, given that the visualization of HSCs in the native niche in live animals has not, to our knowledge, been achieved. Here we describe a dual genetic strategy in mice that restricts reporter labelling to a subset of the most quiescent long-term HSCs (LT-HSCs) and that is compatible with current intravital imaging approaches in the calvarial bone marrow(3-5). We show that this subset of LT-HSCs resides close to both sinusoidal blood vessels and the endosteal surface. By contrast, multipotent progenitor cells (MPPs) show greater variation in distance from the endosteum and are more likely to be associated with transition zone vessels. LT-HSCs are not found in bone marrow niches with the deepest hypoxia and instead are found in hypoxic environments similar to those of MPPs. In vivo time-lapse imaging revealed that LT-HSCs at steady-state show limited motility. Activated LT-HSCs show heterogeneous responses, with some cells becoming highly motile and a fraction of HSCs expanding clonally within spatially restricted domains. These domains have defined characteristics, as HSC expansion is found almost exclusively in a subset of bone marrow cavities with bone-remodelling activity. By contrast, cavities with low bone-resorbing activity do not harbour expanding HSCs. These findings point to previously unknown heterogeneity within the bone marrow microenvironment, imposed by the stages of bone turnover. Our approach enables the direct visualization of HSC behaviours and dissection of heterogeneity in HSC niches.


A dual genetic strategy enables the labelling and in vivo imaging of native long-term haematopoietic stem cells in the mouse calvarial bone marrow.


  
Embryonal precursors of Wilms tumor 期刊论文
SCIENCE, 2019, 366 (6470) : 1247-+
作者:  Coorens, Tim H. H.;  Treger, Taryn D.;  Al-Saadi, Reem;  Moore, Luiza;  Tran, Maxine G. B.;  Mitchell, Thomas J.;  Tugnait, Suzanne;  Thevanesan, Christine;  Young, Matthew D.;  Oliver, Thomas R. W.;  Oostveen, Minou;  Collord, Grace;  Tarpey, Patrick S.;  Cagan, Alex;  Hooks, Yvette;  Brougham, Mark;  Reynolds, Ben C.;  Barone, Giuseppe;  Anderson, John;  Jorgensen, Mette;  Burke, G. A. Amos;  Visser, Johannes;  Nicholson, James C.;  Smeulders, Naima;  Mushtaq, Imran;  Stewart, Grant D.;  Campbell, Peter J.;  Wedge, David C.;  Martincorena, Inigo;  Rampling, Dyanne;  Hook, Liz;  Warren, Anne Y.;  Coleman, Nicholas;  Chowdhury, Tanzina;  Sebire, Neil;  Drost, Jarno;  Saeb-Parsy, Kourosh;  Stratton, Michael R.;  Straathof, Karin;  Pritchard-Jones, Kathy;  Behjati, Sam
收藏  |  浏览/下载:10/0  |  提交时间:2020/02/17
Widespread drying of European peatlands in recent centuries 期刊论文
NATURE GEOSCIENCE, 2019, 12 (11) : 922-+
作者:  Swindles, Graeme T.;  Morris, Paul J.;  Mullan, Donal J.;  Payne, Richard J.;  Roland, Thomas P.;  Amesbury, Matthew J.;  Lamentowicz, Mariusz;  Turner, T. Edward;  Gallego-Sala, Angela;  Sim, Thomas;  Barr, Iestyn D.;  Blaauw, Maarten;  Blundell, Antony;  Chambers, Frank M.;  Charman, Dan J.;  Feurdean, Angelica;  Galloway, Jennifer M.;  Galka, Mariusz;  Green, Sophie M.;  Kajukalo, Katarzyna;  Karofeld, Edgar;  Korhola, Atte;  Lamentowicz, Lukasz;  Langdon, Peter;  Marcisz, Katarzyna;  Mauquoy, Dmitri;  Mazei, Yuri A.;  McKeown, Michelle M.;  Mitchell, Edward A. D.;  Novenko, Elena;  Plunkett, Gill;  Roe, Helen M.;  Schoning, Kristian;  Sillasoo, Ulle;  Tsyganov, Andrey N.;  van der Linden, Marjolein;  Valiranta, Minna;  Warner, Barry
收藏  |  浏览/下载:11/0  |  提交时间:2020/02/16
Spatiotemporal immune zonation of the human kidney 期刊论文
SCIENCE, 2019, 365 (6460) : 1461-+
作者:  Stewart, Benjamin J.;  Ferdinand, John R.;  Young, Matthew D.;  Mitchell, Thomas J.;  Laudon, Kevin W.;  Riding, Alexandra M.;  Richoz, Nathan;  Frazer, Gordon L.;  Staniforth, Joy U. L.;  Braga, Felipe A. Vieira;  Botting, Rachel A.;  Popeseu, Dorin-Mirel;  Vento-Tormo, Baser;  Stephenson, Emily;  Cagan, Alex;  Farndon, Sarah J.;  Polanski, Krzysztof;  Efremova, Mirjana;  Green, Kile;  Velasco-Herrera, Martin Del Castillo;  Guzzo, Charlotte;  Collord, Grace;  Mamanova, Lira;  Aho, Tevita;  Armitage, James N.;  Riddick, Antony C. P.;  Mushtanq, Hnran;  Farrell, Stephen;  Rampling, Dyamte;  Nicholson, James;  Filby, Andrew;  Burge, Johanna;  Lisgo, Steven;  Lindsay, Susan;  Bajenoff, Marc;  Warren, Anne Y.;  Stewart, Grant D.;  Sebire, Neil;  Coleman, Nicholas;  Haniffa, Muzlifah;  Teichmann, Sarah A.;  Behjati, Sam;  Clatworthy, Menna R.
收藏  |  浏览/下载:26/0  |  提交时间:2019/11/27