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Asynchronous carbon sink saturation in African and Amazonian tropical forests 期刊论文
NATURE, 2020, 579 (7797) : 80-+
作者:  Wannes Hubau;  Simon L. Lewis;  Oliver L. Phillips;  Kofi Affum-Baffoe;  Hans Beeckman;  Aida Cuní;  -Sanchez;  Armandu K. Daniels;  Corneille E. N. Ewango;  Sophie Fauset;  Jacques M. Mukinzi;  Douglas Sheil;  Bonaventure Sonké;  Martin J. P. Sullivan;  Terry C. H. Sunderland;  Hermann Taedoumg;  Sean C. Thomas;  Lee J. T. White;  Katharine A. Abernethy;  Stephen Adu-Bredu;  Christian A. Amani;  Timothy R. Baker;  Lindsay F. Banin;  Fidè;  le Baya;  Serge K. Begne;  Amy C. Bennett;  Fabrice Benedet;  Robert Bitariho;  Yannick E. Bocko;  Pascal Boeckx;  Patrick Boundja;  Roel J. W. Brienen;  Terry Brncic;  Eric Chezeaux;  George B. Chuyong;  Connie J. Clark;  Murray Collins;  James A. Comiskey;  David A. Coomes;  Greta C. Dargie;  Thales de Haulleville;  Marie Noel Djuikouo Kamdem;  Jean-Louis Doucet;  Adriane Esquivel-Muelbert;  Ted R. Feldpausch;  Alusine Fofanah;  Ernest G. Foli;  Martin Gilpin;  Emanuel Gloor;  Christelle Gonmadje;  Sylvie Gourlet-Fleury;  Jefferson S. Hall;  Alan C. Hamilton;  David J. Harris;  Terese B. Hart;  Mireille B. N. Hockemba;  Annette Hladik;  Suspense A. Ifo;  Kathryn J. Jeffery;  Tommaso Jucker;  Emmanuel Kasongo Yakusu;  Elizabeth Kearsley;  David Kenfack;  Alexander Koch;  Miguel E. Leal;  Aurora Levesley;  Jeremy A. Lindsell;  Janvier Lisingo;  Gabriela Lopez-Gonzalez;  Jon C. Lovett;  Jean-Remy Makana;  Yadvinder Malhi;  Andrew R. Marshall;  Jim Martin;  Emanuel H. Martin;  Faustin M. Mbayu;  Vincent P. Medjibe;  Vianet Mihindou;  Edward T. A. Mitchard;  Sam Moore;  Pantaleo K. T. Munishi;  Natacha Nssi Bengone;  Lucas Ojo;  Fidè;  le Evouna Ondo;  Kelvin S.-H. Peh;  Georgia C. Pickavance;  Axel Dalberg Poulsen;  John R. Poulsen;  Lan Qie;  Jan Reitsma;  Francesco Rovero;  Michael D. Swaine;  Joey Talbot;  James Taplin;  David M. Taylor;  Duncan W. Thomas;  Benjamin Toirambe;  John Tshibamba Mukendi;  Darlington Tuagben;  Peter M. Umunay;  Geertje M. F. van der Heijden;  Hans Verbeeck;  Jason Vleminckx;  Simon Willcock;  Hannsjö;  rg Wö;  ll;  John T. Woods;  Lise Zemagho
收藏  |  浏览/下载:23/0  |  提交时间:2020/05/13

Structurally intact tropical forests sequestered about half of the global terrestrial carbon uptake over the 1990s and early 2000s, removing about 15 per cent of anthropogenic carbon dioxide emissions(1-3). Climate-driven vegetation models typically predict that this tropical forest '  carbon sink'  will continue for decades(4,5). Here we assess trends in the carbon sink using 244 structurally intact African tropical forests spanning 11 countries, compare them with 321 published plots from Amazonia and investigate the underlying drivers of the trends. The carbon sink in live aboveground biomass in intact African tropical forests has been stable for the three decades to 2015, at 0.66 tonnes of carbon per hectare per year (95 per cent confidence interval 0.53-0.79), in contrast to the long-term decline in Amazonian forests(6). Therefore the carbon sink responses of Earth'  s two largest expanses of tropical forest have diverged. The difference is largely driven by carbon losses from tree mortality, with no detectable multi-decadal trend in Africa and a long-term increase in Amazonia. Both continents show increasing tree growth, consistent with the expected net effect of rising atmospheric carbon dioxide and air temperature(7-9). Despite the past stability of the African carbon sink, our most intensively monitored plots suggest a post-2010 increase in carbon losses, delayed compared to Amazonia, indicating asynchronous carbon sink saturation on the two continents. A statistical model including carbon dioxide, temperature, drought and forest dynamics accounts for the observed trends and indicates a long-term future decline in the African sink, whereas the Amazonian sink continues to weaken rapidly. Overall, the uptake of carbon into Earth'  s intact tropical forests peaked in the 1990s. Given that the global terrestrial carbon sink is increasing in size, independent observations indicating greater recent carbon uptake into the Northern Hemisphere landmass(10) reinforce our conclusion that the intact tropical forest carbon sink has already peaked. This saturation and ongoing decline of the tropical forest carbon sink has consequences for policies intended to stabilize Earth'  s climate.


  
Spatial heterogeneity in CO2, CH4, and energy fluxes: insights from airborne eddy covariance measurements over the Mid-Atlantic region 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2020, 15 (3)
作者:  Hannun, Reem A.;  Wolfe, Glenn M.;  Kawa, S. Randy;  Hanisco, Thomas F.;  Newman, Paul A.;  Alfieri, Joseph G.;  Barrick, John;  Clark, Kenneth L.;  DiGangi, Joshua P.;  Diskin, Glenn S.;  King, John;  Kustas, William P.;  Mitra, Bhaskar;  Noormets, Asko;  Nowak, John B.;  Thornhill, K. Lee;  Vargas, Rodrigo
收藏  |  浏览/下载:12/0  |  提交时间:2020/07/02
airborne eddy covariance  CO2 and CH4  fluxes  biosphere-atmosphere exchange  
Alfvenic Acceleration Sustains Ganymede's Footprint Tail Aurora 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2020, 47 (3)
作者:  Szalay, J. R.;  Allegrini, F.;  Bagenal, F.;  Bolton, S. J.;  Bonfond, B.;  Clark, G.;  Connerney, J. E. P.;  Ebert, R. W.;  Gershman, D. J.;  Giles, R. S.;  Gladstone, G. R.;  Greathouse, T.;  Hospodarsky, G. B.;  Imai, M.;  Kurth, W. S.;  Kotsiaros, S.;  Louarn, P.;  McComas, D. J.;  Saur, J.;  Sulaiman, A. H.;  Wilson, R. J.
收藏  |  浏览/下载:10/0  |  提交时间:2020/07/02
Ocean acidification does not impair the behaviour of coral reef fishes 期刊论文
NATURE, 2020, 577 (7790) : 370-+
作者:  Clark, Timothy D.;  Raby, Graham D.;  Roche, Dominique G.;  Binning, Sandra A.;  Speers-Roesch, Ben;  Jutfelt, Fredrik;  Sundin, Josefin
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/03

The partial pressure of CO2 in the oceans has increased rapidly over the past century, driving ocean acidification and raising concern for the stability of marine ecosystems(1-3). Coral reef fishes are predicted to be especially susceptible to end-of-century ocean acidification on the basis of several high-profile papers(4,5) that have reported profound behavioural and sensory impairments-for example, complete attraction to the chemical cues of predators under conditions of ocean acidification. Here, we comprehensively and transparently show that-in contrast to previous studies-end-of-century ocean acidification levels have negligible effects on important behaviours of coral reef fishes, such as the avoidance of chemical cues from predators, fish activity levels and behavioural lateralization (left-right turning preference). Using data simulations, we additionally show that the large effect sizes and small within-group variances that have been reported in several previous studies are highly improbable. Together, our findings indicate that the reported effects of ocean acidification on the behaviour of coral reef fishes are not reproducible, suggesting that behavioural perturbations will not be a major consequence for coral reef fishes in high CO2 oceans.


  
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes 期刊论文
NATURE, 2020, 578 (7793) : 102-+
作者:  Clark, Timothy D.;  Raby, Graham D.;  Roche, Dominique G.;  Binning, Sandra A.;  Speers-Roesch, Ben;  Jutfelt, Fredrik;  Sundin, Josefin
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The discovery of drivers of cancer has traditionally focused on protein-coding genes(1-4). Here we present analyses of driver point mutations and structural variants in non-coding regions across 2,658 genomes from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium(5) of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). For point mutations, we developed a statistically rigorous strategy for combining significance levels from multiple methods of driver discovery that overcomes the limitations of individual methods. For structural variants, we present two methods of driver discovery, and identify regions that are significantly affected by recurrent breakpoints and recurrent somatic juxtapositions. Our analyses confirm previously reported drivers(6,7), raise doubts about others and identify novel candidates, including point mutations in the 5'  region of TP53, in the 3'  untranslated regions of NFKBIZ and TOB1, focal deletions in BRD4 and rearrangements in the loci of AKR1C genes. We show that although point mutations and structural variants that drive cancer are less frequent in non-coding genes and regulatory sequences than in protein-coding genes, additional examples of these drivers will be found as more cancer genomes become available.


  
Zucchini consensus motifs determine the mechanism of pre-piRNA production 期刊论文
NATURE, 2020, 578 (7794) : 311-+
作者:  Clark, Timothy D.;  Raby, Graham D.;  Roche, Dominique G.;  Binning, Sandra A.;  Speers-Roesch, Ben;  Jutfelt, Fredrik;  Sundin, Josefin
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

PIWI-interacting RNAs (piRNAs) of between approximately 24 and 31 nucleotides in length guide PIWI proteins to silence transposons in animal gonads, thereby ensuring fertility(1). In the biogenesis of piRNAs, PIWI proteins are first loaded with 5 '  -monophosphorylated RNA fragments called pre-pre-piRNAs, which then undergo endonucleolytic cleavage to produce pre-piRNAs(1,2). Subsequently, the 3 '  -ends of pre-piRNAs are trimmed by the exonuclease Trimmer (PNLDC1 in mouse)(3-6) and 2 '  -O-methylated by the methyltransferase Hen1 (HENMT1 in mouse)(7-9), generating mature piRNAs. It is assumed that the endonuclease Zucchini (MitoPLD in mouse) is a major enzyme catalysing the cleavage of pre-pre-piRNAs into pre-piRNAs(10-13). However, direct evidence for this model is lacking, and how pre-piRNAs are generated remains unclear. Here, to analyse pre-piRNA production, we established a Trimmer-knockout silkworm cell line and derived a cell-free system that faithfully recapitulates Zucchini-mediated cleavage of PIWI-loaded pre-pre-piRNAs. We found that pre-piRNAs are generated by parallel Zucchini-dependent and -independent mechanisms. Cleavage by Zucchini occurs at previously unrecognized consensus motifs on pre-pre-piRNAs, requires the RNA helicase Armitage, and is accompanied by 2 '  -O-methylation of pre-piRNAs. By contrast, slicing of pre-pre-piRNAs with weak Zucchini motifs is achieved by downstream complementary piRNAs, producing pre-piRNAs without 2 '  -O-methylation. Regardless of the endonucleolytic mechanism, pre-piRNAs are matured by Trimmer and Hen1. Our findings highlight multiplexed processing of piRNA precursors that supports robust and flexible piRNA biogenesis.


A silkworm model recapitulates key steps of Zucchini-mediated cleavage of pre-pre-piRNA and provides insights into Zucchini-mediated and -independent pathways that generate pre-piRNAs, which converge to a common piRNA maturation step.


  
Io's Effect on Energetic Charged Particles as Seen in Juno Data 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (23) : 13615-13620
作者:  Paranicas, C.;  Mauk, B. H.;  Haggerty, D. K.;  Clark, G.;  Kollmann, P.;  Rymer, A. M.;  Westlake, J.;  Allen, R. C.;  Szalay, J.;  Ebert, R. W.;  Sulaiman, A. H.;  Imai, M.;  Roussos, E.;  Krupp, N.;  Nenon, Q.;  Bagenal, F.;  Bolton, S. J.
收藏  |  浏览/下载:10/0  |  提交时间:2020/02/17
energetic charged particles  Io  Juno  
A nutritional mechanism underpinning folivore occurrence in disturbed forests 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 453
作者:  Au, Jessie;  Clark, Robert G.;  Allen, Chris;  Marsh, Karen J.;  Foley, William J.;  Youngentob, Kara N.
收藏  |  浏览/下载:9/0  |  提交时间:2020/02/17
Logging  Fire  Herbivory  Eucalyptus  Koala  Forestry  
Energetic Oxygen and Sulfur Charge States in the Outer Jovian Magnetosphere: Insights From the Cassini Jupiter Flyby 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (21) : 11709-11717
作者:  Allen, R. C.;  Paranicas, C. P.;  Bagenal, F.;  Vines, S. K.;  Hamilton, D. C.;  Allegrini, F.;  Clark, G.;  Delamere, P. A.;  Kim, T. K.;  Krimigis, S. M.;  Mitchell, D. G.;  Smith, T. H.;  Wilson, R. J.
收藏  |  浏览/下载:10/0  |  提交时间:2020/02/17
Jupiter  Composition  Cassini  Juno  
On the Relation Between Jovian Aurorae and the Loading/Unloading of the Magnetic Flux: Simultaneous Measurements From Juno, Hubble Space Telescope, and Hisaki 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (21) : 11632-11641
作者:  Yao, Z. H.;  Grodent, D.;  Kurth, W. S.;  Clark, G.;  Mauk, B. H.;  Kimura, T.;  Bonfond, B.;  Ye, S-Y;  Lui, A. T.;  Radioti, A.;  Palmaerts, B.;  Dunn, W. R.;  Ray, L. C.;  Bagenal, F.;  Badman, S., V;  Rae, I. J.;  Guo, R. L.;  Pu, Z. Y.;  Gerard, J-C;  Yoshioka, K.;  Nichols, J. D.;  Bolton, S. J.;  Levin, S. M.
收藏  |  浏览/下载:15/0  |  提交时间:2020/02/17