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Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms 期刊论文
Science, 2020
作者:  David E. Gordon;  Joseph Hiatt;  Mehdi Bouhaddou;  Veronica V. Rezelj;  Svenja Ulferts;  Hannes Braberg;  Alexander S. Jureka;  Kirsten Obernier;  Jeffrey Z. Guo;  Jyoti Batra;  Robyn M. Kaake;  Andrew R. Weckstein;  Tristan W. Owens;  Meghna Gupta;  Sergei Pourmal;  Erron W. Titus;  Merve Cakir;  Margaret Soucheray;  Michael McGregor;  Zeynep Cakir;  Gwendolyn Jang;  Matthew J. O’Meara;  Tia A. Tummino;  Ziyang Zhang;  Helene Foussard;  Ajda Rojc;  Yuan Zhou;  Dmitry Kuchenov;  Ruth Hüttenhain;  Jiewei Xu;  Manon Eckhardt;  Danielle L. Swaney;  Jacqueline M. Fabius;  Manisha Ummadi;  Beril Tutuncuoglu;  Ujjwal Rathore;  Maya Modak;  Paige Haas;  Kelsey M. Haas;  Zun Zar Chi Naing;  Ernst H. Pulido;  Ying Shi;  Inigo Barrio-Hernandez;  Danish Memon;  Eirini Petsalaki;  Alistair Dunham;  Miguel Correa Marrero;  David Burke;  Cassandra Koh;  Thomas Vallet;  Jesus A. Silvas;  Caleigh M. Azumaya;  Christian Billesbølle;  Axel F. Brilot;  Melody G. Campbell;  Amy Diallo;  Miles Sasha Dickinson;  Devan Diwanji;  Nadia Herrera;  Nick Hoppe;  Huong T. Kratochvil;  Yanxin Liu;  Gregory E. Merz;  Michelle Moritz;  Henry C. Nguyen;  Carlos Nowotny;  Cristina Puchades;  Alexandrea N. Rizo;  Ursula Schulze-Gahmen;  Amber M. Smith;  Ming Sun;  Iris D. Young;  Jianhua Zhao;  Daniel Asarnow;  Justin Biel;  Alisa Bowen;  Julian R. Braxton;  Jen Chen;  Cynthia M. Chio;  Un Seng Chio;  Ishan Deshpande;  Loan Doan;  Bryan Faust;  Sebastian Flores;  Mingliang Jin;  Kate Kim;  Victor L. Lam;  Fei Li;  Junrui Li;  Yen-Li Li;  Yang Li;  Xi Liu;  Megan Lo;  Kyle E. Lopez;  Arthur A. Melo;  Frank R. Moss;  Phuong Nguyen;  Joana Paulino;  Komal Ishwar Pawar;  Jessica K. Peters;  Thomas H. Pospiech;  Maliheh Safari;  Smriti Sangwan;  Kaitlin Schaefer;  Paul V. Thomas;  Aye C. Thwin;  Raphael Trenker;  Eric Tse;  Tsz Kin Martin Tsui;  Feng Wang;  Natalie Whitis;  Zanlin Yu;  Kaihua Zhang;  Yang Zhang;  Fengbo Zhou;  Daniel Saltzberg;  QCRG Structural Biology Consortium12†;  Anthony J. Hodder;  Amber S. Shun-Shion;  Daniel M. Williams;  Kris M. White;  Romel Rosales;  Thomas Kehrer;  Lisa Miorin;  Elena Moreno;  Arvind H. Patel;  Suzannah Rihn;  Mir M. Khalid;  Albert Vallejo-Gracia;  Parinaz Fozouni;  Camille R. Simoneau;  Theodore L. Roth;  David Wu;  Mohd Anisul Karim;  Maya Ghoussaini;  Ian Dunham;  Francesco Berardi;  Sebastian Weigang;  Maxime Chazal;  Jisoo Park;  James Logue;  Marisa McGrath;  Stuart Weston;  Robert Haupt;  C. James Hastie;  Matthew Elliott;  Fiona Brown;  Kerry A. Burness;  Elaine Reid;  Mark Dorward;  Clare Johnson;  Stuart G. Wilkinson;  Anna Geyer;  Daniel M. Giesel;  Carla Baillie;  Samantha Raggett;  Hannah Leech;  Rachel Toth;  Nicola Goodman;  Kathleen C. Keough;  Abigail L. Lind;  Zoonomia Consortium‡;  Reyna J. Klesh;  Kafi R. Hemphill;  Jared Carlson-Stevermer;  Jennifer Oki;  Kevin Holden;  Travis Maures;  Katherine S. Pollard;  Andrej Sali;  David A. Agard;  Yifan Cheng;  James S. Fraser;  Adam Frost;  Natalia Jura;  Tanja Kortemme;  Aashish Manglik;  Daniel R. Southworth;  Robert M. Stroud;  Dario R. Alessi;  Paul Davies;  Matthew B. Frieman;  Trey Ideker;  Carmen Abate;  Nolwenn Jouvenet;  Georg Kochs;  Brian Shoichet;  Melanie Ott;  Massimo Palmarini;  Kevan M. Shokat;  Adolfo García-Sastre;  Jeremy A. Rassen;  Robert Grosse;  Oren S. Rosenberg;  Kliment A. Verba;  Christopher F. Basler;  Marco Vignuzzi;  Andrew A. Peden;  Pedro Beltrao;  Nevan J. Krogan
收藏  |  浏览/下载:25/0  |  提交时间:2020/12/07
Revealing the Dynamical Transition of Anisotropy behind the HOST by Koopman Analysis 期刊论文
Geophysical Research Letters, 2020
作者:  Licheng Li;  Hongchao Zuo;  Bolong Chen;  Yang Guo;  Mengmeng Ma;  Longxiang Dong
收藏  |  浏览/下载:6/0  |  提交时间:2020/11/20
Adaptation of SARS-CoV-2 in BALB/c mice for testing vaccine efficacy 期刊论文
Science, 2020
作者:  Hongjing Gu;  Qi Chen;  Guan Yang;  Lei He;  Hang Fan;  Yong-Qiang Deng;  Yanxiao Wang;  Yue Teng;  Zhongpeng Zhao;  Yujun Cui;  Yuchang Li;  Xiao-Feng Li;  Jiangfan Li;  Na-Na Zhang;  Xiaolan Yang;  Shaolong Chen;  Yan Guo;  Guangyu Zhao;  Xiliang Wang;  De-Yan Luo;  Hui Wang;  Xiao Yang;  Yan Li;  Gencheng Han;  Yuxian He;  Xiaojun Zhou;  Shusheng Geng;  Xiaoli Sheng;  Shibo Jiang;  Shihui Sun;  Cheng-Feng Qin;  Yusen Zhou
收藏  |  浏览/下载:17/0  |  提交时间:2020/09/30
Nitrogen‐induced acidification, not N‐nutrient, dominates suppressive N effects on arbuscular mycorrhizal fungi 期刊论文
Global Change Biology, 2020
作者:  Shang Pan;  Yang Wang;  Yunpeng Qiu;  Dima Chen;  Lin Zhang;  Chenglong Ye;  Hui Guo;  Weixing Zhu;  Aiqun Chen;  Guohua Xu;  Yi Zhang;  Yongfei Bai;  Shuijin Hu
收藏  |  浏览/下载:8/0  |  提交时间:2020/09/30
Effects of regional transport on haze in the North China Plain: transport of precursors or secondary inorganic aerosols 期刊论文
Geophysical Research Letters, 2020
作者:  Huiyun Du;  Jie Li;  Zifa Wang;  Xu Dao;  Song Guo;  Lingling Wang;  Shuangliang Ma;  Jianbin Wu;  Wenyi Yang;  Xueshun Chen;  Yele Sun
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/14
Partitioning of cancer therapeutics in nuclear condensates 期刊论文
Science, 2020
作者:  Isaac A. Klein;  Ann Boija;  Lena K. Afeyan;  Susana Wilson Hawken;  Mengyang Fan;  Alessandra Dall'Agnese;  Ozgur Oksuz;  Jonathan E. Henninger;  Krishna Shrinivas;  Benjamin R. Sabari;  Ido Sagi;  Victoria E. Clark;  Jesse M. Platt;  Mrityunjoy Kar;  Patrick M. McCall;  Alicia V. Zamudio;  John C. Manteiga;  Eliot L. Coffey;  Charles H. Li;  Nancy M. Hannett;  Yang Eric Guo;  Tim-Michael Decker;  Tong Ihn Lee;  Tinghu Zhang;  Jing-Ke Weng;  Dylan J. Taatjes;  Arup Chakraborty;  Phillip A. Sharp;  Young Tae Chang;  Anthony A. Hyman;  Nathanael S. Gray;  Richard A. Young
收藏  |  浏览/下载:17/0  |  提交时间:2020/06/22
Late Miocene Climate Cooling Contributed to the Disappearance of Hominoids in Yunnan Region, Southwestern China 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2020, 47 (11)
作者:  Li, Pei;  Zhang, Chunxia;  Kelley, Jay;  Deng, Chenglong;  Ji, Xueping;  Jablonski, Nina G.;  Wu, Haibin;  Fu, Yang;  Guo, Zhengtang;  Zhu, Rixiang
收藏  |  浏览/下载:6/0  |  提交时间:2020/05/20
late Miocene  climate change  hominoids  Yunnan  chemical weathering  
The water lily genome and the early evolution of flowering plants 期刊论文
NATURE, 2020, 577 (7788) : 79-+
作者:  Zhang, Liangsheng;  Chen, Fei;  Zhang, Xingtan;  Li, Zhen;  Zhao, Yiyong;  Lohaus, Rolf;  Chang, Xiaojun;  Dong, Wei;  Ho, Simon Y. W.;  Liu, Xing;  Song, Aixia;  Chen, Junhao;  Guo, Wenlei;  Wang, Zhengjia;  Zhuang, Yingyu;  Wang, Haifeng;  Chen, Xuequn;  Hu, Juan;  Liu, Yanhui;  Qin, Yuan;  Wang, Kai;  Dong, Shanshan;  Liu, Yang;  Zhang, Shouzhou;  Yu, Xianxian;  Wu, Qian;  Wang, Liangsheng;  Yan, Xueqing;  Jiao, Yuannian;  Kong, Hongzhi;  Zhou, Xiaofan;  Yu, Cuiwei;  Chen, Yuchu;  Li, Fan;  Wang, Jihua;  Chen, Wei;  Chen, Xinlu;  Jia, Qidong;  Zhang, Chi;  Jiang, Yifan;  Zhang, Wanbo;  Liu, Guanhua;  Fu, Jianyu;  Chen, Feng;  Ma, Hong;  Van de Peer, Yves;  Tang, Haibao
收藏  |  浏览/下载:13/0  |  提交时间:2020/07/03

Water lilies belong to the angiosperm order Nymphaeales. Amborellales, Nymphaeales and Austrobaileyales together form the so-called ANA-grade of angiosperms, which are extant representatives of lineages that diverged the earliest from the lineage leading to the extant mesangiosperms(1-3). Here we report the 409-megabase genome sequence of the blue-petal water lily (Nymphaea colorata). Our phylogenomic analyses support Amborellales and Nymphaeales as successive sister lineages to all other extant angiosperms. The N. colorata genome and 19 other water lily transcriptomes reveal a Nymphaealean whole-genome duplication event, which is shared by Nymphaeaceae and possibly Cabombaceae. Among the genes retained from this whole-genome duplication are homologues of genes that regulate flowering transition and flower development. The broad expression of homologues of floral ABCE genes in N. colorata might support a similarly broadly active ancestral ABCE model of floral organ determination in early angiosperms. Water lilies have evolved attractive floral scents and colours, which are features shared with mesangiosperms, and we identified their putative biosynthetic genes in N. colorata. The chemical compounds and biosynthetic genes behind floral scents suggest that they have evolved in parallel to those in mesangiosperms. Because of its unique phylogenetic position, the N. colorata genome sheds light on the early evolution of angiosperms.


  
Feedback generates a second receptive field in neurons of the visual cortex 期刊论文
NATURE, 2020
作者:  Shi, Enzheng;  Yuan, Biao;  Shiring, Stephen B.;  Gao, Yao;  Akriti;  Guo, Yunfan;  Su, Cong;  Lai, Minliang;  Yang, Peidong;  Kong, Jing;  Savoie, Brett M.;  Yu, Yi;  Dou, Letian
收藏  |  浏览/下载:44/0  |  提交时间:2020/07/03

Animals sense the environment through pathways that link sensory organs to the brain. In the visual system, these feedforward pathways define the classical feedforward receptive field (ffRF), the area in space in which visual stimuli excite a neuron(1). The visual system also uses visual context-the visual scene surrounding a stimulus-to predict the content of the stimulus(2), and accordingly, neurons have been identified that are excited by stimuli outside their ffRF(3-8). However, the mechanisms that generate excitation to stimuli outside the ffRF are unclear. Here we show that feedback projections onto excitatory neurons in the mouse primary visual cortex generate a second receptive field that is driven by stimuli outside the ffRF. The stimulation of this feedback receptive field (fbRF) elicits responses that are slower and are delayed in comparison with those resulting from the stimulation of the ffRF. These responses are preferentially reduced by anaesthesia and by silencing higher visual areas. Feedback inputs from higher visual areas have scattered receptive fields relative to their putative targets in the primary visual cortex, which enables the generation of the fbRF. Neurons with fbRFs are located in cortical layers that receive strong feedback projections and are absent in the main input layer, which is consistent with a laminar processing hierarchy. The observation that large, uniform stimuli-which cover both the fbRF and the ffRF-suppress these responses indicates that the fbRF and the ffRF are mutually antagonistic. Whereas somatostatin-expressing inhibitory neurons are driven by these large stimuli, inhibitory neurons that express parvalbumin and vasoactive intestinal peptide have mutually antagonistic fbRF and ffRF, similar to excitatory neurons. Feedback projections may therefore enable neurons to use context to estimate information that is missing from the ffRF and to report differences in stimulus features across visual space, regardless of whether excitation occurs inside or outside the ffRF. By complementing the ffRF, the fbRF that we identify here could contribute to predictive processing.


Feedback projections onto neurons of the mouse primary visual cortex generate a second excitatory receptive field that is driven by stimuli outside of the classical feedforward receptive field, with responses mediated by higher visual areas.


  
Systematic Bias in the Prediction of Warm-Rain Hydrometeors in the WDM6 Microphysics Scheme and Modifications 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2020, 125 (4)
作者:  Lei, Hengchi;  Guo, Jiaxu;  Chen, Di;  Yang, Jiefan
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/02