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Debates: Does Information Theory Provide a New Paradigm for Earth Science? Sharper Predictions Using Occam's Digital Razor 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (2)
作者:  Weijs, Steven. V.;  Ruddell, Benjamin. L.
收藏  |  浏览/下载:12/0  |  提交时间:2020/07/02
algorithmic information theory  Occam'  s razor  physically based modeling  model complexity  data compression  data-driven modeling  
Recurrent interactions in local cortical circuits 期刊论文
NATURE, 2020, 579 (7798) : 256-+
作者:  Liu, Yang;  Nguyen, Phong T.;  Wang, Xun;  Zhao, Yuting;  Meacham, Corbin E.;  Zou, Zhongju;  Bordieanu, Bogdan;  Johanns, Manuel;  Vertommen, Didier;  Wijshake, Tobias;  May, Herman;  Xiao, Guanghua;  Shoji-Kawata, Sanae;  Rider, Mark H.
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/03

Most cortical synapses are local and excitatory. Local recurrent circuits could implement amplification, allowing pattern completion and other computations(1-4). Cortical circuits contain subnetworks that consist of neurons with similar receptive fields and increased connectivity relative to the network average(5,6). Cortical neurons that encode different types of information are spatially intermingled and distributed over large brain volumes(5-7), and this complexity has hindered attempts to probe the function of these subnetworks by perturbing them individually(8). Here we use computational modelling, optical recordings and manipulations to probe the function of recurrent coupling in layer 2/3 of the mouse vibrissal somatosensory cortex during active tactile discrimination. A neural circuit model of layer 2/3 revealed that recurrent excitation enhances sensory signals by amplification, but only for subnetworks with increased connectivity. Model networks with high amplification were sensitive to damage: loss of a few members of the subnetwork degraded stimulus encoding. We tested this prediction by mapping neuronal selectivity(7) and photoablating(9,10) neurons with specific selectivity. Ablation of a small proportion of layer 2/3 neurons (10-20, less than 5% of the total) representing touch markedly reduced responses in the spared touch representation, but not in other representations. Ablations most strongly affected neurons with stimulus responses that were similar to those of the ablated population, which is also consistent with network models. Recurrence among cortical neurons with similar selectivity therefore drives input-specific amplification during behaviour.


Computational modelling, imaging and single-cell ablation in layer 2/3 of the mouse vibrissal somatosensory cortex reveals that recurrent activity in cortical neurons can drive input-specific amplification during behaviour.


  
Hidden diversity of vacancy networks in Prussian blue analogues 期刊论文
NATURE, 2020, 578 (7794) : 256-+
作者:  Hendrickx, N. W.;  Franke, D. P.;  Sammak, A.;  Scappucci, G.;  Veldhorst, M.
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

Prussian blue analogues (PBAs) are a diverse family of microporous inorganic solids, known for their gas storage ability(1), metal-ion immobilization(2), proton conduction(3), and stimuli-dependent magnetic(4,5), electronic(6) and optical(7) properties. This family of materials includes the double-metal cyanide catalysts(8,9) and the hexacyanoferrate/ hexacyanomanganate battery materials(10,11). Central to the various physical properties of PBAs is their ability to reversibly transport mass, a process enabled by structural vacancies. Conventionally presumed to be random(12,13), vacancy arrangements are crucial because they control micropore-network characteristics, and hence the diffusivity and adsorption profiles(14,15). The long-standing obstacle to characterizing the vacancy networks of PBAs is the inaccessibility of single crystals(16). Here we report the growth of single crystals of various PBAs and the measurement and interpretation of their X-ray diffuse scattering patterns. We identify a diversity of non-random vacancy arrangements that is hidden from conventional crystallographic powder analysis. Moreover, we explain this unexpected phase complexity in terms of a simple microscopic model that is based on local rules of electroneutrality and centrosymmetry. The hidden phase boundaries that emerge demarcate vacancynetwork polymorphs with very different micropore characteristics. Our results establish a foundation for correlated defect engineering in PBAs as a means of controlling storage capacity, anisotropy and transport efficiency.


  
Antagonistic cooperativity between crystal growth modifiers 期刊论文
NATURE, 2020, 577 (7791) : 497-+
作者:  Ma, Wenchuan;  Lutsko, James F.;  Rimer, Jeffrey D.;  Vekilov, Peter G.
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/03

Inhibitor pairs that suppress the crystallization of haematin, which is a part of malaria parasites'  physiology, show unexpected antagonism due to attenuation of step pinning by kink blockers.


Ubiquitous processes in nature and the industry exploit crystallization from multicomponent environments(1-5)  however, laboratory efforts have focused on the crystallization of pure solutes(6,7) and the effects of single growth modifiers(8,9). Here we examine the molecular mechanisms employed by pairs of inhibitors in blocking the crystallization of haematin, which is a model organic compound with relevance to the physiology of malaria parasites(10,11). We use a combination of scanning probe microscopy and molecular modelling to demonstrate that inhibitor pairs, whose constituents adopt distinct mechanisms of haematin growth inhibition, kink blocking and step pinning(12,13), exhibit both synergistic and antagonistic cooperativity depending on the inhibitor combination and applied concentrations. Synergism between two crystal growth modifiers is expected, but the antagonistic cooperativity of haematin inhibitors is not reflected in current crystal growth models. We demonstrate that kink blockers reduce the line tension of step edges, which facilitates both the nucleation of crystal layers and step propagation through the gates created by step pinners. The molecular viewpoint on cooperativity between crystallization modifiers provides guidance on the pairing of modifiers in the synthesis of crystalline materials. The proposed mechanisms indicate strategies to understand and control crystallization in both natural and engineered systems, which occurs in complex multicomponent media(1-3,8,9). In a broader context, our results highlight the complexity of crystal-modifier interactions mediated by the structure and dynamics of the crystal interface.


  
A Stochastic Approach to Modeling Tidal Creek Evolution: Exploring Environmental Influences on CreekTopologies Through Ensemble Predictions 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (23) : 13836-13844
作者:  Li, Xiaorong;  Leonardi, Nicoletta;  Plater, Andrew J.
收藏  |  浏览/下载:5/0  |  提交时间:2020/02/17
tidal creek evolution  stochastic simulation  ensemble predictions  wetland topography  vegetation  reduced complexity model  
Identification and application of the most suitable entropy model for precipitation complexity measurement 期刊论文
ATMOSPHERIC RESEARCH, 2019, 221: 88-97
作者:  Zhang, Liangliang;  Li, Heng;  Liu, Dong;  Fu, Qiang;  Li, Mo;  Faiz, Muhammad Abrar;  Khan, Muhammad Imran;  Li, Tianxiao
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/26
Precipitation  Complexity measurement  Entropy theory  Multi-model optimization  Impact factor  
Comparing performance of contrasting distance-independent and distance-dependent competition metrics in predicting individual tree diameter increment and survival within structurally-heterogeneous, mixed-species forests of Northeastern United States 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 433: 205-216
作者:  Kuehne, Christian;  Weiskittel, Aaron R.;  Waskiewicz, Justin
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
Non-spatial and spatial competition indices  Light interception  Growing space  Growth and yield  Modeling  Model complexity  Northeastern US  
Multi-level emulation of complex climate model responses to boundary forcing data 期刊论文
CLIMATE DYNAMICS, 2019, 52: 1505-1531
作者:  Tran, Giang T.;  Oliver, Kevin I. C.;  Holden, Philip B.;  Edwards, Neil R.;  Sobester, Andras;  Challenor, Peter
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Probabilistic prediction  Multi-level emulators  Model hierarchy  Spatio-temporal data  Intermediate complexity model  
Simulation Model for Collaborative Decision Making on Sediment Source Reduction in an Intensively Managed Watershed 期刊论文
WATER RESOURCES RESEARCH, 2019, 55 (2) : 1544-1564
作者:  Cho, Se Jong;  Wilcock, Peter R.;  Belmont, Patrick;  Gran, Karen B.;  Hobbs, Benjamin F.
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/26
watershed simulation model  reduced-complexity modeling  nonpoint source sediment management  collaborative modeling  
A Primer for Model Selection: The Decisive Role of Model Complexity 期刊论文
WATER RESOURCES RESEARCH, 2018, 54 (3) : 1688-1715
作者:  Hoege, Marvin;  Woehling, Thomas;  Nowak, Wolfgang
收藏  |  浏览/下载:3/0  |  提交时间:2019/04/09
model selection  model complexity  information criteria (IC)  primer