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Intensive farming drives long-term shifts in avian community composition 期刊论文
NATURE, 2020, 579 (7799) : 393-+
作者:  Oh, Eugene;  Mark, Kevin G.;  Mocciaro, Annamaria;  Watson, Edmond R.;  Prabu, J. Rajan;  Cha, Denny D.;  Kampmann, Martin;  Gamarra, Nathan;  Zhou, Coral Y.;  Rape, Michael
收藏  |  浏览/下载:15/0  |  提交时间:2020/05/13

Variation in vegetation and climate affects the long-term changes in bird communities in intensive-agriculture habitats, but not in diversified-agriculture or natural-forest habitats, by changing the local colonization and extinction rates.


Agricultural practices constitute both the greatest cause of biodiversity loss and the greatest opportunity for conservation(1,2), given the shrinking scope of protected areas in many regions. Recent studies have documented the high levels of biodiversity-across many taxa and biomes-that agricultural landscapes can support over the short term(1,3,4). However, little is known about the long-term effects of alternative agricultural practices on ecological communities(4,5) Here we document changes in bird communities in intensive-agriculture, diversified-agriculture and natural-forest habitats in 4 regions of Costa Rica over a period of 18 years. Long-term directional shifts in bird communities were evident in intensive- and diversified-agricultural habitats, but were strongest in intensive-agricultural habitats, where the number of endemic and International Union for Conservation of Nature (IUCN) Red List species fell over time. All major guilds, including those involved in pest control, pollination and seed dispersal, were affected. Bird communities in intensive-agricultural habitats proved more susceptible to changes in climate, with hotter and drier periods associated with greater changes in community composition in these settings. These findings demonstrate that diversified agriculture can help to alleviate the long-term loss of biodiversity outside natural protected areas(1).


  
Live-animal imaging of native haematopoietic stem and progenitor cells 期刊论文
NATURE, 2020, 578 (7794) : 278-+
作者:  Gerstung, Moritz;  Jolly, Clemency;  Leshchiner, Ignaty;  Dentro, Stefan C.;  Gonzalez, Santiago;  Rosebrock, Daniel;  Mitchell, Thomas J.;  Rubanova, Yulia;  Anur, Pavana;  Yu, Kaixian;  Tarabichi, Maxime;  Deshwar, Amit;  Wintersinger, Jeff;  Kleinheinz, Kortine;  Vazquez-Garcia, Ignacio;  Haase, Kerstin;  Jerman, Lara;  Sengupta, Subhajit;  Macintyre, Geoff;  Malikic, Salem;  Donmez, Nilgun;  Livitz, Dimitri G.;  Cmero, Marek;  Demeulemeester, Jonas;  Schumacher, Steven;  Fan, Yu;  Yao, Xiaotong;  Lee, Juhee;  Schlesner, Matthias;  Boutros, Paul C.;  Bowtell, David D.;  Zhu, Hongtu;  Getz, Gad;  Imielinski, Marcin;  Beroukhim, Rameen;  Sahinalp, S. Cenk;  Ji, Yuan;  Peifer, Martin;  Markowetz, Florian;  Mustonen, Ville;  Yuan, Ke;  Wang, Wenyi;  Morris, Quaid D.;  Spellman, Paul T.;  Wedge, David C.;  Van Loo, Peter;  Deshwar, Amit G.;  Adams, David J.;  Campbell, Peter J.;  Cao, Shaolong;  Christie, Elizabeth L.;  Cun, Yupeng;  Dawson, Kevin J.;  Drews, Ruben M.;  Eils, Roland;  Fittall, Matthew;  Garsed, Dale W.;  Ha, Gavin;  Lee-Six, Henry;  Martincorena, Inigo;  Oesper, Layla;  Peto, Myron;  Raphael, Benjamin J.;  Salcedo, Adriana;  Shi, Ruian;  Shin, Seung Jun;  Spiro, Oliver;  Stein, Lincoln D.;  Vembu, Shankar;  Wheeler, David A.;  Yang, Tsun-Po
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The biology of haematopoietic stem cells (HSCs) has predominantly been studied under transplantation conditions(1,2). It has been particularly challenging to study dynamic HSC behaviour, given that the visualization of HSCs in the native niche in live animals has not, to our knowledge, been achieved. Here we describe a dual genetic strategy in mice that restricts reporter labelling to a subset of the most quiescent long-term HSCs (LT-HSCs) and that is compatible with current intravital imaging approaches in the calvarial bone marrow(3-5). We show that this subset of LT-HSCs resides close to both sinusoidal blood vessels and the endosteal surface. By contrast, multipotent progenitor cells (MPPs) show greater variation in distance from the endosteum and are more likely to be associated with transition zone vessels. LT-HSCs are not found in bone marrow niches with the deepest hypoxia and instead are found in hypoxic environments similar to those of MPPs. In vivo time-lapse imaging revealed that LT-HSCs at steady-state show limited motility. Activated LT-HSCs show heterogeneous responses, with some cells becoming highly motile and a fraction of HSCs expanding clonally within spatially restricted domains. These domains have defined characteristics, as HSC expansion is found almost exclusively in a subset of bone marrow cavities with bone-remodelling activity. By contrast, cavities with low bone-resorbing activity do not harbour expanding HSCs. These findings point to previously unknown heterogeneity within the bone marrow microenvironment, imposed by the stages of bone turnover. Our approach enables the direct visualization of HSC behaviours and dissection of heterogeneity in HSC niches.


A dual genetic strategy enables the labelling and in vivo imaging of native long-term haematopoietic stem cells in the mouse calvarial bone marrow.


  
Climate-driven habitat change causes evolution in Threespine Stickleback 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Roches, Simone Des;  Bell, Michael A.;  Palkovacs, Eric P.
收藏  |  浏览/下载:6/0  |  提交时间:2020/02/17
adaptation  climate change  Gasterosteus aculeatus  intraspecific variation  latitudinal gradient  rapid evolution  resurvey  space-for-time  
Spatial scaling of population synchrony in marine fish depends on their life history 期刊论文
ECOLOGY LETTERS, 2019, 22 (11) : 1787-1796
作者:  Marquez, Jonatan E.;  Lee, Aline Magdalena;  Aanes, Sondre;  Engen, Steinar;  Herfindal, Ivar;  Salthaug, Are;  Saether, Bernt-Erik
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
Abundance  generation time  modifiable areal unit problem  pace of life  population dynamics  population growth rate  slow-fast continuum life history variation  spatial processes  
Transient Ionospheric Upflow Driven by Poleward Moving Auroral forms Observed During the Rocket Experiment for Neutral Upwelling 2 (RENU2) Campaign 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (12) : 6297-6305
作者:  Burleigh, M.;  Zettergren, M.;  Lynch, K.;  Lessard, M.;  Moen, J.;  Clausen, L.;  Kenward, D.;  Hysell, D.;  Liemohn, M.
收藏  |  浏览/下载:0/0  |  提交时间:2019/11/26
poleward moving auroral forms  ionospheric upflow  ionospheric downflow  latitudinal variation in ion response  RENU2 sounding rocket campaign  ion response time varies with ion mass  
The changing risk perception towards nuclear power in China after the Fukushima nuclear accident in Japan 期刊论文
ENERGY POLICY, 2018, 120: 294-301
作者:  Huan, Lei;  He, Ruoying;  Yang, Qianqi;  Chen, Jin;  Zhou, Ying;  Hammitt, James K.;  Lu, Xi;  Bi, Jun;  Liu, Yang
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
Fukushima  Nuclear power  Risk perception  Spatial variation  Time variation  
Thermal buffering capacity of the germination phenotype across the environmental envelope of the Cactaceae 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (12)
作者:  Seal, Charlotte E.;  Daws, Matthew I.;  Flores, Joel;  Ortega-Baes, Pablo;  Galindez, Guadalupe;  Leon-Lobos, Pedro;  Sandoval, Ana;  Ceroni Stuva, Aldo;  Ramirez Bullon, Natali;  Davila-Aranda, Patricia;  Ordonez-Salanueva, Cesar A.;  Yanez-Espinosa, Laura;  Ulian, Tiziana;  Amosso, Cecilia;  Zubani, Lino;  Torres Bilbao, Alberto;  Pritchard, Hugh W.
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
Cactaceae  comparative physiology  germination phenotype  interspecific variation  phenotypic plasticity  predictive model  thermal resilience  thermal time  threatened species  
Source apportionment of PM2.5 size distribution and composition data from multiple stationary sites using a mobile platform 期刊论文
ATMOSPHERIC RESEARCH, 2017, 190
作者:  Liao, Ho-Tang;  Chou, Charles C. -K.;  Huang, Sheng-Hsiu;  Lu, Chia-Jung;  Chen, Chih-Chieh;  Hopke, Philip K.;  Wu, Chang-Fu
收藏  |  浏览/下载:13/0  |  提交时间:2019/04/09
Source apportionment  Mobile platform  Spatial variation  Positive matrix factorization (PMF)  Multiple time resolution