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Sustainable irrigation based on co-regulation of soil water supply and atmospheric evaporative demand 期刊论文
Nature Communications, 2021
作者:  Zhang, Jingwen;  Guan, Kaiyu;  Peng, Bin;  Pan, Ming;  Zhou, Wang;  Jiang, Chongya;  Kimm, Hyungsuk;  Franz, Trenton E.;  Grant, Robert F.;  Yang, Yi;  Rudnick, Daran R.;  Heeren, Derek M.;  Suyker, Andrew E.;  Bauerle, William L.;  Miner, Grace L.
收藏  |  浏览/下载:14/0  |  提交时间:2021/10/07
Population sequencing data reveal a compendium of mutational processes in the human germ line 期刊论文
Science, 2021
作者:  Vladimir B. Seplyarskiy;  Ruslan A. Soldatov;  Evan Koch;  Ryan J. McGinty;  Jakob M. Goldmann;  Ryan D. Hernandez;  Kathleen Barnes;  Adolfo Correa;  Esteban G. Burchard;  Patrick T. Ellinor;  Stephen T. McGarvey;  Braxton D. Mitchell;  Ramachandran S. Vasan;  Susan Redline;  Edwin Silverman;  Scott T. Weiss;  Donna K. Arnett;  John Blangero;  Eric Boerwinkle;  Jiang He;  Courtney Montgomery;  D. C. Rao;  Jerome I. Rotter;  Kent D. Taylor;  Jennifer A. Brody;  Yii-Der Ida Chen;  Lisa de las Fuentes;  Chii-Min Hwu;  Stephen S. Rich;  Ani W. Manichaikul;  Josyf C. Mychaleckyj;  Nicholette D. Palmer;  Jennifer A. Smith;  Sharon L. R. Kardia;  Patricia A. Peyser;  Lawrence F. Bielak;  Timothy D. O’Connor;  Leslie S. Emery;  NHLBI Trans-Omics for Precision Medicine Consortium‡;  TOPMed Population Genetics Working Group;  Christian Gilissen;  Wendy S. W. Wong;  Peter V. Kharchenko;  Shamil Sunyaev
收藏  |  浏览/下载:13/0  |  提交时间:2021/08/30
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes 期刊论文
Science, 2021
作者:  Matthew B. Hufford;  Arun S. Seetharam;  Margaret R. Woodhouse;  Kapeel M. Chougule;  Shujun Ou;  Jianing Liu;  William A. Ricci;  Tingting Guo;  Andrew Olson;  Yinjie Qiu;  Rafael Della Coletta;  Silas Tittes;  Asher I. Hudson;  Alexandre P. Marand;  Sharon Wei;  Zhenyuan Lu;  Bo Wang;  Marcela K. Tello-Ruiz;  Rebecca D. Piri;  Na Wang;  Dong won Kim;  Yibing Zeng;  Christine H. O’Connor;  Xianran Li;  Amanda M. Gilbert;  Erin Baggs;  Ksenia V. Krasileva;  John L. Portwood;  Ethalinda K. S. Cannon;  Carson M. Andorf;  Nancy Manchanda;  Samantha J. Snodgrass;  David E. Hufnagel;  Qiuhan Jiang;  Sarah Pedersen;  Michael L. Syring;  David A. Kudrna;  Victor Llaca;  Kevin Fengler;  Robert J. Schmitz;  Jeffrey Ross-Ibarra;  Jianming Yu;  Jonathan I. Gent;  Candice N. Hirsch;  Doreen Ware;  R. Kelly Dawe
收藏  |  浏览/下载:18/0  |  提交时间:2021/08/10
Peta–electron volt gamma-ray emission from the Crab Nebula 期刊论文
Science, 2021
作者:  The LHAASO Collaboration*†;  Zhen Cao;  F. Aharonian;  Q. An;  Axikegu;  L. X. Bai;  Y. X. Bai;  Y. W. Bao;  D. Bastieri;  X. J. Bi;  Y. J. Bi;  H. Cai;  J. T. Cai;  Zhe Cao;  J. Chang;  J. F. Chang;  B. M. Chen;  E. S. Chen;  J. Chen;  Liang Chen;  Liang Chen;  Long Chen;  M. J. Chen;  M. L. Chen;  Q. H. Chen;  S. H. Chen;  S. Z. Chen;  T. L. Chen;  X. L. Chen;  Y. Chen;  N. Cheng;  Y. D. Cheng;  S. W. Cui;  X. H. Cui;  Y. D. Cui;  B. D’Ettorre Piazzoli;  B. Z. Dai;  H. L. Dai;  Z. G. Dai;  Danzengluobu;  D. della Volpe;  X. J. Dong;  K. K. Duan;  J. H. Fan;  Y. Z. Fan;  Z. X. Fan;  J. Fang;  K. Fang;  C. F. Feng;  L. Feng;  S. H. Feng;  Y. L. Feng;  B. Gao;  C. D. Gao;  L. Q. Gao;  Q. Gao;  W. Gao;  M. M. Ge;  L. S. Geng;  G. H. Gong;  Q. B. Gou;  M. H. Gu;  F. L. Guo;  J. G. Guo;  X. L. Guo;  Y. Q. Guo;  Y. Y. Guo;  Y. A. Han;  H. H. He;  H. N. He;  J. C. He;  S. L. He;  X. B. He;  Y. He;  M. Heller;  Y. K. Hor;  C. Hou;  X. Hou;  H. B. Hu;  S. Hu;  S. C. Hu;  X. J. Hu;  D. H. Huang;  Q. L. Huang;  W. H. Huang;  X. T. Huang;  X. Y. Huang;  Z. C. Huang;  F. Ji;  X. L. Ji;  H. Y. Jia;  K. Jiang;  Z. J. Jiang;  C. Jin;  T. Ke;  D. Kuleshov;  K. Levochkin;  B. B. Li;  Cheng Li;  Cong Li;  F. Li;  H. B. Li;  H. C. Li;  H. Y. Li;  Jian Li;  Jie Li;  K. Li;  W. L. Li;  X. R. Li;  Xin Li;  Xin Li;  Y. Li;  Y. Z. Li;  Zhe Li;  Zhuo Li;  E. W. Liang;  Y. F. Liang;  S. J. Lin;  B. Liu;  C. Liu;  D. Liu;  H. Liu;  H. D. Liu;  J. Liu;  J. L. Liu;  J. S. Liu;  J. Y. Liu;  M. Y. Liu;  R. Y. Liu;  S. M. Liu;  W. Liu;  Y. Liu;  Y. N. Liu;  Z. X. Liu;  W. J. Long;  R. Lu;  H. K. Lv;  B. Q. Ma;  L. L. Ma;  X. H. Ma;  J. R. Mao;  A. Masood;  Z. Min;  W. Mitthumsiri;  T. Montaruli;  Y. C. Nan;  B. Y. Pang;  P. Pattarakijwanich;  Z. Y. Pei;  M. Y. Qi;  Y. Q. Qi;  B. Q. Qiao;  J. J. Qin;  D. Ruffolo;  V. Rulev;  A. Saiz;  L. Shao;  O. Shchegolev;  X. D. Sheng;  J. Y. Shi;  H. C. Song;  Yu. V. Stenkin;  V. Stepanov;  Y. Su;  Q. N. Sun;  X. N. Sun;  Z. B. Sun;  P. H. T. Tam;  Z. B. Tang;  W. W. Tian;  B. D. Wang;  C. Wang;  H. Wang;  H. G. Wang;  J. C. Wang;  J. S. Wang;  L. P. Wang;  L. Y. Wang;  R. N. Wang;  Wei Wang;  Wei Wang;  X. G. Wang;  X. J. Wang;  X. Y. Wang;  Y. Wang;  Y. D. Wang;  Y. J. Wang;  Y. P. Wang;  Z. H. Wang;  Z. X. Wang;  Zhen Wang;  Zheng Wang;  D. M. Wei;  J. J. Wei;  Y. J. Wei;  T. Wen;  C. Y. Wu;  H. R. Wu;  S. Wu;  W. X. Wu;  X. F. Wu;  S. Q. Xi;  J. Xia;  J. J. Xia;  G. M. Xiang;  D. X. Xiao;  G. Xiao;  H. B. Xiao;  G. G. Xin;  Y. L. Xin;  Y. Xing;  D. L. Xu;  R. X. Xu;  L. Xue;  D. H. Yan;  J. Z. Yan;  C. W. Yang;  F. F. Yang;  J. Y. Yang;  L. L. Yang;  M. J. Yang;  R. Z. Yang;  S. B. Yang;  Y. H. Yao;  Z. G. Yao;  Y. M. Ye;  L. Q. Yin;  N. Yin;  X. H. You;  Z. Y. You;  Y. H. Yu;  Q. Yuan;  H. D. Zeng;  T. X. Zeng;  W. Zeng;  Z. K. Zeng;  M. Zha;  X. X. Zhai;  B. B. Zhang;  H. M. Zhang;  H. Y. Zhang;  J. L. Zhang;  J. W. Zhang;  L. X. Zhang;  Li Zhang;  Lu Zhang;  P. F. Zhang;  P. P. Zhang;  R. Zhang;  S. R. Zhang;  S. S. Zhang;  X. Zhang;  X. P. Zhang;  Y. F. Zhang;  Y. L. Zhang;  Yi Zhang;  Yong Zhang;  B. Zhao;  J. Zhao;  L. Zhao;  L. Z. Zhao;  S. P. Zhao;  F. Zheng;  Y. Zheng;  B. Zhou;  H. Zhou;  J. N. Zhou;  P. Zhou;  R. Zhou;  X. X. Zhou;  C. G. Zhu;  F. R. Zhu;  H. Zhu;  K. J. Zhu;  X. Zuo
收藏  |  浏览/下载:14/0  |  提交时间:2021/07/27
Antarctic surface temperature and elevation during the Last Glacial Maximum 期刊论文
Science, 2021
作者:  Christo Buizert;  T. J. Fudge;  William H. G. Roberts;  Eric J. Steig;  Sam Sherriff-Tadano;  Catherine Ritz;  Eric Lefebvre;  Jon Edwards;  Kenji Kawamura;  Ikumi Oyabu;  Hideaki Motoyama;  Emma C. Kahle;  Tyler R. Jones;  Ayako Abe-Ouchi;  Takashi Obase;  Carlos Martin;  Hugh Corr;  Jeffrey P. Severinghaus;  Ross Beaudette;  Jenna A. Epifanio;  Edward J. Brook;  Kaden Martin;  Jérôme Chappellaz;  Shuji Aoki;  Takakiyo Nakazawa;  Todd A. Sowers;  Richard B. Alley;  Jinho Ahn;  Michael Sigl;  Mirko Severi;  Nelia W. Dunbar;  Anders Svensson;  John M. Fegyveresi;  Chengfei He;  Zhengyu Liu;  Jiang Zhu;  Bette L. Otto-Bliesner;  Vladimir Y. Lipenkov;  Masa Kageyama;  Jakob Schwander
收藏  |  浏览/下载:14/0  |  提交时间:2021/06/15
Electron Temperature Inversion by Stimulated Brillouin Scattering During Electron Gyro‐Harmonic Heating at EISCAT 期刊论文
Geophysical Research Letters, 2020
作者:  H. Y. Fu;  M. L. Jiang;  K. N. Wang;  J. Wu;  Q. L. Li;  M. T. Rietveld;  E. Varberg;  I. Hä;  ggströ;  m;  Y. Q. Jin
收藏  |  浏览/下载:8/0  |  提交时间:2020/09/08
Pharmacologic fibroblast reprogramming into photoreceptors restores vision 期刊论文
NATURE, 2020, 581 (7806) : 83-+
作者:  Jiang, Mingkai;  Medlyn, Belinda E.;  Drake, John E.;  Duursma, Remko A.;  Anderson, Ian C.;  Barton, Craig V. M.;  Boer, Matthias M.;  Carrillo, Yolima;  Castaneda-Gomez, Laura;  Collins, Luke;  Crous, Kristine Y.;  De Kauwe, Martin G.;  dos Santos, Bruna M.;  Emmerson, Kathryn M.;  Facey, Sarah L.;  Gherlenda, Andrew N.;  Gimeno, Teresa E.;  Hasegawa, Shun;  Johnson, Scott N.;  Kannaste, Astrid;  Macdonald, Catriona A.;  Mahmud, Kashif;  Moore, Ben D.;  Nazaries, Loic;  Neilson, Elizabeth H. J.;  Nielsen, Uffe N.;  Niinemets, Ulo;  Noh, Nam Jin;  Ochoa-Hueso, Raul;  Pathare, Varsha S.;  Pendall, Elise;  Pihlblad, Johanna;  Pineiro, Juan;  Powell, Jeff R.;  Power, Sally A.;  Reich, Peter B.;  Renchon, Alexandre A.;  Riegler, Markus;  Rinnan, Riikka;  Rymer, Paul D.;  Salomon, Roberto L.;  Singh, Brajesh K.;  Smith, Benjamin;  Tjoelker, Mark G.;  Walker, Jennifer K. M.;  Wujeska-Klause, Agnieszka;  Yang, Jinyan;  Zaehle, Soenke;  Ellsworth, David S.
收藏  |  浏览/下载:45/0  |  提交时间:2020/07/03

Photoreceptor loss is the final common endpoint in most retinopathies that lead to irreversible blindness, and there are no effective treatments to restore vision(1,2). Chemical reprogramming of fibroblasts offers an opportunity to reverse vision loss  however, the generation of sensory neuronal subtypes such as photoreceptors remains a challenge. Here we report that the administration of a set of five small molecules can chemically induce the transformation of fibroblasts into rod photoreceptor-like cells. The transplantation of these chemically induced photoreceptor-like cells (CiPCs) into the subretinal space of rod degeneration mice (homozygous for rd1, also known as Pde6b) leads to partial restoration of the pupil reflex and visual function. We show that mitonuclear communication is a key determining factor for the reprogramming of fibroblasts into CiPCs. Specifically, treatment with these five compounds leads to the translocation of AXIN2 to the mitochondria, which results in the production of reactive oxygen species, the activation of NF-kappa B and the upregulation of Ascl1. We anticipate that CiPCs could have therapeutic potential for restoring vision.


A set of five small molecules can induce the transformation of fibroblasts into rod photoreceptor-like cells, which can partially restore pupil reflex and visual function when transplanted into a rod degeneration mouse model.


  
Environmental reservoir dynamics predict global infection patterns and population impacts for the fungal disease white-nose syndrome 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (13) : 7255-7262
作者:  Hoyt, Joseph R.;  Langwig, Kate E.;  Sun, Keping;  Parise, Katy L.;  Li, Aoqiang;  Wang, Yujuan;  Huang, Xiaobin;  Worledge, Lisa;  Miller, Helen;  White, J. Paul;  Kaarakka, Heather M.;  Redell, Jennifer A.;  Gorfol, Tamas;  Boldogh, Sandor Andras;  Fukui, Dai;  Sakuyama, Muneki;  Yachimori, Syuuji;  Sato, Akiyoshi;  Dalannast, Munkhnast;  Jargalsaikhan, Ariunbold;  Batbayar, Nyambayar;  Yovel, Yossi;  Amichai, Eran;  Natradze, Ioseb;  Frick, Winifred F.;  Foster, Jeffrey T.;  Feng, Jiang;  Kilpatrick, A. Marm
收藏  |  浏览/下载:14/0  |  提交时间:2020/05/13
environmental pathogen reservoir  global disease dynamics  white-nose syndrome  Pseudogymnoascus destructans  
Late Cretaceous neornithine from Europe illuminates the origins of crown birds 期刊论文
NATURE, 2020, 579 (7799) : 397-+
作者:  Shao, Zhengping;  Flynn, Ryan A.;  Crowe, Jennifer L.;  Zhu, Yimeng;  Liang, Jialiang;  Jiang, Wenxia;  Aryan, Fardin;  Aoude, Patrick;  Bertozzi, Carolyn R.;  Estes, Verna M.;  Lee, Brian J.;  Bhagat, Govind;  Zha, Shan;  Calo, Eliezer
收藏  |  浏览/下载:15/0  |  提交时间:2020/05/13

Our understanding of the earliest stages of crown bird evolution is hindered by an exceedingly sparse avian fossil record from the Mesozoic era. The most ancient phylogenetic divergences among crown birds are known to have occurred in the Cretaceous period(1-3), but stem-lineage representatives of the deepest subclades of crown birds-Palaeognathae (ostriches and kin), Galloanserae (landfowl and waterfowl) and Neoaves (all other extant birds)-are unknown from the Mesozoic era. As a result, key questions related to the ecology(4,5), biogeography(3,6,7) and divergence times(1,8-10) of ancestral crown birds remain unanswered. Here we report a new Mesozoic fossil that occupies a position close to the last common ancestor of Galloanserae and fills a key phylogenetic gap in the early evolutionary history of crown birds(10,11). Asteriornis maastrichtensis, gen. et sp. nov., from the Maastrichtian age of Belgium (66.8-66.7 million years ago), is represented by a nearly complete, three-dimensionally preserved skull and associated postcranial elements. The fossil represents one of the only well-supported crown birds from the Mesozoic era(12), and is the first Mesozoic crown bird with well-represented cranial remains. Asteriornis maastrichtensis exhibits a previously undocumented combination of galliform (landfowl)-like and anseriform (waterfowl)-like features, and its presence alongside a previously reported Ichthyornis-like taxon from the same locality(13) provides direct evidence of the co-occurrence of crown birds and avialan stem birds. Its occurrence in the Northern Hemisphere challenges biogeographical hypotheses of a Gondwanan origin of crown birds(3), and its relatively small size and possible littoral ecology may corroborate proposed ecological filters(4,5,9) that influenced the persistence of crown birds through the end-Cretaceous mass extinction.


A newly discovered fossil from the Cretaceous of Belgium is the oldest modern bird ever found, showing a unique combination of features and suggesting attributes shared by avian survivors of the end-Cretaceous extinction.


  
Microbiome analyses of blood and tissues suggest cancer diagnostic approach 期刊论文
NATURE, 2020, 579 (7800) : 567-+
作者:  Shao, Zhengping;  Flynn, Ryan A.;  Crowe, Jennifer L.;  Zhu, Yimeng;  Liang, Jialiang;  Jiang, Wenxia;  Aryan, Fardin;  Aoude, Patrick;  Bertozzi, Carolyn R.;  Estes, Verna M.;  Lee, Brian J.;  Bhagat, Govind;  Zha, Shan;  Calo, Eliezer
收藏  |  浏览/下载:54/0  |  提交时间:2020/07/03

Microbial nucleic acids are detected in samples of tissues and blood from more than 10,000 patients with cancer, and machine learning is used to show that these can be used to discriminate between and among different types of cancer, suggesting a new microbiome-based diagnostic approach.


Systematic characterization of the cancer microbiome provides the opportunity to develop techniques that exploit non-human, microorganism-derived molecules in the diagnosis of a major human disease. Following recent demonstrations that some types of cancer show substantial microbial contributions(1-10), we re-examined whole-genome and whole-transcriptome sequencing studies in The Cancer Genome Atlas(11) (TCGA) of 33 types of cancer from treatment-naive patients (a total of 18,116 samples) for microbial reads, and found unique microbial signatures in tissue and blood within and between most major types of cancer. These TCGA blood signatures remained predictive when applied to patients with stage Ia-IIc cancer and cancers lacking any genomic alterations currently measured on two commercial-grade cell-free tumour DNA platforms, despite the use of very stringent decontamination analyses that discarded up to 92.3% of total sequence data. In addition, we could discriminate among samples from healthy, cancer-free individuals (n = 69) and those from patients with multiple types of cancer (prostate, lung, and melanoma  100 samples in total) solely using plasma-derived, cell-free microbial nucleic acids. This potential microbiome-based oncology diagnostic tool warrants further exploration.