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Ecological insights from three decades of animal movement tracking across a changing Arctic 期刊论文
Science, 2020
作者:  Sarah C. Davidson;  Gil Bohrer;  Eliezer Gurarie;  Scott LaPoint;  Peter J. Mahoney;  Natalie T. Boelman;  Jan U. H. Eitel;  Laura R. Prugh;  Lee A. Vierling;  Jyoti Jennewein;  Emma Grier;  Ophélie Couriot;  Allicia P. Kelly;  Arjan J. H. Meddens;  Ruth Y. Oliver;  Roland Kays;  Martin Wikelski;  Tomas Aarvak;  Joshua T. Ackerman;  José A. Alves;  Erin Bayne;  Bryan Bedrosian;  Jerrold L. Belant;  Andrew M. Berdahl;  Alicia M. Berlin;  Dominique Berteaux;  Joël Bêty;  Dmitrijs Boiko;  Travis L. Booms;  Bridget L. Borg;  Stan Boutin;  W. Sean Boyd;  Kane Brides;  Stephen Brown;  Victor N. Bulyuk;  Kurt K. Burnham;  David Cabot;  Michael Casazza;  Katherine Christie;  Erica H. Craig;  Shanti E. Davis;  Tracy Davison;  Dominic Demma;  Christopher R. DeSorbo;  Andrew Dixon;  Robert Domenech;  Götz Eichhorn;  Kyle Elliott;  Joseph R. Evenson;  Klaus-Michael Exo;  Steven H. Ferguson;  Wolfgang Fiedler;  Aaron Fisk;  Jérôme Fort;  Alastair Franke;  Mark R. Fuller;  Stefan Garthe;  Gilles Gauthier;  Grant Gilchrist;  Petr Glazov;  Carrie E. Gray;  David Grémillet;  Larry Griffin;  Michael T. Hallworth;  Autumn-Lynn Harrison;  Holly L. Hennin;  J. Mark Hipfner;  James Hodson;  James A. Johnson;  Kyle Joly;  Kimberly Jones;  Todd E. Katzner;  Jeff W. Kidd;  Elly C. Knight;  Michael N. Kochert;  Andrea Kölzsch;  Helmut Kruckenberg;  Benjamin J. Lagassé;  Sandra Lai;  Jean-François Lamarre;  Richard B. Lanctot;  Nicholas C. Larter;  A. David M. Latham;  Christopher J. Latty;  James P. Lawler;  Don-Jean Léandri-Breton;  Hansoo Lee;  Stephen B. Lewis;  Oliver P. Love;  Jesper Madsen;  Mark Maftei;  Mark L. Mallory;  Buck Mangipane;  Mikhail Y. Markovets;  Peter P. Marra;  Rebecca McGuire;  Carol L. McIntyre;  Emily A. McKinnon;  Tricia A. Miller;  Sander Moonen;  Tong Mu;  Gerhard J. D. M. Müskens;  Janet Ng;  Kerry L. Nicholson;  Ingar Jostein Øien;  Cory Overton;  Patricia A. Owen;  Allison Patterson;  Aevar Petersen;  Ivan Pokrovsky;  Luke L. Powell;  Rui Prieto;  Petra Quillfeldt;  Jennie Rausch;  Kelsey Russell;  Sarah T. Saalfeld;  Hans Schekkerman;  Joel A. Schmutz;  Philipp Schwemmer;  Dale R. Seip;  Adam Shreading;  Mónica A. Silva;  Brian W. Smith;  Fletcher Smith;  Jeff P. Smith;  Katherine R. S. Snell;  Aleksandr Sokolov;  Vasiliy Sokolov;  Diana V Solovyeva;  Mathew S. Sorum;  Grigori Tertitski;  J. F. Therrien;  Kasper Thorup;  T. Lee Tibbitts;  Ingrid Tulp;  Brian D. Uher-Koch;  Rob S. A. van Bemmelen;  Steven Van Wilgenburg;  Andrew L. Von Duyke;  Jesse L. Watson;  Bryan D. Watts;  Judy A. Williams;  Matthew T. Wilson;  James R. Wright;  Michael A. Yates;  David J. Yurkowski;  Ramūnas Žydelis;  Mark Hebblewhite
收藏  |  浏览/下载:19/0  |  提交时间:2020/11/09
Climate drives the geography of marine consumption by changing predator communities 期刊论文
Proceedings of the National Academy of Sciences, 2020
作者:  Matthew A. Whalen;  Ross D. B. Whippo;  John J. Stachowicz;  Paul H. York;  Erin Aiello;  Teresa Alcoverro;  Andrew H. Altieri;  Lisandro Benedetti-Cecchi;  Camilla Bertolini;  Midoli Bresch;  Fabio Bulleri;  Paul E. Carnell;  Stéphanie Cimon;  Rod M. Connolly;  Mathieu Cusson;  Meredith S. Diskin;  Elrika D’Souza;  Augusto A. V. Flores;  F. Joel Fodrie;  Aaron W. E. Galloway;  Leo C. Gaskins;  Olivia J. Graham;  Torrance C. Hanley;  Christopher J. Henderson;  Clara M. Hereu;  Margot Hessing-Lewis;  Kevin A. Hovel;  Brent B. Hughes;  A. Randall Hughes;  Kristin M. Hultgren;  Holger Jänes;  Dean S. Janiak;  Lane N. Johnston;  Pablo Jorgensen;  Brendan P. Kelaher;  Claudia Kruschel;  Brendan S. Lanham;  Kun-Seop Lee;  Jonathan S. Lefcheck;  Enrique Lozano-Álvarez;  Peter I. Macreadie;  Zachary L. Monteith;  Nessa E. O’Connor;  Andrew D. Olds;  Jennifer K. O’Leary;  Christopher J. Patrick;  Oscar Pino;  Alistair G. B. Poore;  Michael A. Rasheed;  Wendel W. Raymond;  Katrin Reiss;  O. Kennedy Rhoades;  Max T. Robinson;  Paige G. Ross;  Francesca Rossi;  Thomas A. Schlacher;  Janina Seemann;  Brian R. Silliman;  Delbert L. Smee;  Martin Thiel;  Richard K. F. Unsworth;  Brigitta I. van Tussenbroek;  Adriana Vergés;  Mallarie E. Yeager;  Bree K. Yednock;  Shelby L. Ziegler;  J. Emmett Duffy
收藏  |  浏览/下载:23/0  |  提交时间:2020/11/09
ECOSTRESS: NASA's Next Generation Mission to Measure Evapotranspiration From the International Space Station 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (4)
作者:  Fisher, Joshua B.;  Lee, Brian;  Purdy, Adam J.;  Halverson, Gregory H.;  Dohlen, Matthew B.;  Cawse-Nicholson, Kerry;  Wang, Audrey;  Anderson, Ray G.;  Aragon, Bruno;  Arain, M. Altaf;  Baldocchi, Dennis D.;  Baker, John M.;  Barral, Helene;  Bernacchi, Carl J.;  Bernhofer, Christian;  Biraud, Sebastien C.;  Bohrer, Gil;  Brunsell, Nathaniel;  Cappelaere, Bernard;  Castro-Contreras, Saulo;  Chun, Junghwa;  Conrad, Bryan J.;  Cremonese, Edoardo;  Demarty, Jerome;  Desai, Ankur R.;  De Ligne, Anne;  Foltynova, Lenka;  Goulden, Michael L.;  Griffis, Timothy J.;  Gruenwald, Thomas;  Johnson, Mark S.;  Kang, Minseok;  Kelbe, Dave;  Kowalska, Natalia;  Lim, Jong-Hwan;  Mainassara, Ibrahim;  McCabe, Matthew F.;  Missik, Justine E. C.;  Mohanty, Binayak P.;  Moore, Caitlin E.;  Morillas, Laura;  Morrison, Ross;  Munger, J. William;  Posse, Gabriela;  Richardson, Andrew D.;  Russell, Eric S.;  Ryu, Youngryel;  Sanchez-Azofeifa, Arturo;  Schmidt, Marius;  Schwartz, Efrat;  Sharp, Iain;  Sigut, Ladislav;  Tang, Yao;  Hulley, Glynn;  Anderson, Martha;  Hain, Christopher;  French, Andrew;  Wood, Eric;  Hook, Simon
收藏  |  浏览/下载:23/0  |  提交时间:2020/07/02
ECOSTRESS  eddy covariance  evapotranspiration  latent heat flux  satellite  validation  
Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform 期刊论文
NATURE, 2020
作者:  Touat, Mehdi;  Li, Yvonne Y.;  Boynton, Adam N.;  Spurr, Liam F.;  Iorgulescu, J. Bryan;  Bohrson, Craig L.;  Cortes-Ciriano, Isidro;  Birzu, Cristina;  Geduldig, Jack E.;  Pelton, Kristine;  Lim-Fat, Mary Jane;  Pal, Sangita;  Ferrer-Luna, Ruben;  Ramkissoon, Shakti H.;  Dubois, Frank;  Bellamy, Charlotte;  Currimjee, Naomi;  Bonardi, Juliana;  Qian Kenin;  Ho, Patricia;  Malinowski, Seth;  Taquet, Leon;  Jones, Robert E.;  Shetty, Aniket;  Chow, Kin-Hoe;  Sharaf, Radwa;  Pavlick, Dean;  Albacker, Lee A.;  Younan, Nadia;  Baldini, Capucine;  Verreault, Maite;  Giry, Marine;  Guillerm, Erell;  Ammari, Samy;  Beuvon, Frederic;  Mokhtari, Karima;  Alentorn, Agusti;  Dehais, Caroline;  Houillier, Caroline;  Laigle-Donadey, Florence;  Psimaras, Dimitri;  Lee, Eudocia Q.;  Nayak, Lakshmi;  McFaline-Figueroa, J. Ricardo;  Carpentier, Alexandre;  Cornu, Philippe;  Capelle, Laurent;  Mathon, Bertrand;  Barnholtz-Sloan, Jill S.;  Chakravarti, Arnab;  Bi, Wenya Linda;  Chiocca, E. Antonio;  Fehnel, Katie Pricola;  Alexandrescu, Sanda;  Chi, Susan N.;  Haas-Kogan, Daphne;  Batchelor, Tracy T.;  Frampton, Garrett M.;  Alexander, Brian M.;  Huang, Raymond Y.;  Ligon, Azra H.;  Coulet, Florence;  Delattre, Jean-Yves;  Hoang-Xuan, Khe;  Meredith, David M.;  Santagata, Sandro;  Duval, Alex;  Sanson, Marc;  Cherniack, Andrew D.;  Wen, Patrick Y.;  Reardon, David A.;  Marabelle, Aurelien;  Park, Peter J.;  Idbaih, Ahmed;  Beroukhim, Rameen;  Bandopadhayay, Pratiti;  Bielle, Franck;  Ligon, Keith L.
收藏  |  浏览/下载:11/0  |  提交时间:2020/07/03

Reverse genetics has been an indispensable tool to gain insights into viral pathogenesis and vaccine development. The genomes of large RNA viruses, such as those from coronaviruses, are cumbersome to clone and manipulate inEscherichia coliowing to the size and occasional instability of the genome(1-3). Therefore, an alternative rapid and robust reverse-genetics platform for RNA viruses would benefit the research community. Here we show the full functionality of a yeast-based synthetic genomics platform to genetically reconstruct diverse RNA viruses, including members of theCoronaviridae,FlaviviridaeandPneumoviridaefamilies. Viral subgenomic fragments were generated using viral isolates, cloned viral DNA, clinical samples or synthetic DNA, and these fragments were then reassembled in one step inSaccharomyces cerevisiaeusing transformation-associated recombination cloning to maintain the genome as a yeast artificial chromosome. T7 RNA polymerase was then used to generate infectious RNA to rescue viable virus. Using this platform, we were able to engineer and generate chemically synthesized clones of the virus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)(4), which has caused the recent pandemic of coronavirus disease (COVID-19), in only a week after receipt of the synthetic DNA fragments. The technical advance that we describe here facilitates rapid responses to emerging viruses as it enables the real-time generation and functional characterization of evolving RNA virus variants during an outbreak.


A yeast-based synthetic genomics platform is used to reconstruct and characterize large RNA viruses from synthetic DNA fragments  this technique will facilitate the rapid analysis of RNA viruses, such as SARS-CoV-2, during an outbreak.


  
Late Cretaceous neornithine from Europe illuminates the origins of crown birds 期刊论文
NATURE, 2020, 579 (7799) : 397-+
作者:  Shao, Zhengping;  Flynn, Ryan A.;  Crowe, Jennifer L.;  Zhu, Yimeng;  Liang, Jialiang;  Jiang, Wenxia;  Aryan, Fardin;  Aoude, Patrick;  Bertozzi, Carolyn R.;  Estes, Verna M.;  Lee, Brian J.;  Bhagat, Govind;  Zha, Shan;  Calo, Eliezer
收藏  |  浏览/下载:13/0  |  提交时间:2020/05/13

Our understanding of the earliest stages of crown bird evolution is hindered by an exceedingly sparse avian fossil record from the Mesozoic era. The most ancient phylogenetic divergences among crown birds are known to have occurred in the Cretaceous period(1-3), but stem-lineage representatives of the deepest subclades of crown birds-Palaeognathae (ostriches and kin), Galloanserae (landfowl and waterfowl) and Neoaves (all other extant birds)-are unknown from the Mesozoic era. As a result, key questions related to the ecology(4,5), biogeography(3,6,7) and divergence times(1,8-10) of ancestral crown birds remain unanswered. Here we report a new Mesozoic fossil that occupies a position close to the last common ancestor of Galloanserae and fills a key phylogenetic gap in the early evolutionary history of crown birds(10,11). Asteriornis maastrichtensis, gen. et sp. nov., from the Maastrichtian age of Belgium (66.8-66.7 million years ago), is represented by a nearly complete, three-dimensionally preserved skull and associated postcranial elements. The fossil represents one of the only well-supported crown birds from the Mesozoic era(12), and is the first Mesozoic crown bird with well-represented cranial remains. Asteriornis maastrichtensis exhibits a previously undocumented combination of galliform (landfowl)-like and anseriform (waterfowl)-like features, and its presence alongside a previously reported Ichthyornis-like taxon from the same locality(13) provides direct evidence of the co-occurrence of crown birds and avialan stem birds. Its occurrence in the Northern Hemisphere challenges biogeographical hypotheses of a Gondwanan origin of crown birds(3), and its relatively small size and possible littoral ecology may corroborate proposed ecological filters(4,5,9) that influenced the persistence of crown birds through the end-Cretaceous mass extinction.


A newly discovered fossil from the Cretaceous of Belgium is the oldest modern bird ever found, showing a unique combination of features and suggesting attributes shared by avian survivors of the end-Cretaceous extinction.


  
Microbiome analyses of blood and tissues suggest cancer diagnostic approach 期刊论文
NATURE, 2020, 579 (7800) : 567-+
作者:  Shao, Zhengping;  Flynn, Ryan A.;  Crowe, Jennifer L.;  Zhu, Yimeng;  Liang, Jialiang;  Jiang, Wenxia;  Aryan, Fardin;  Aoude, Patrick;  Bertozzi, Carolyn R.;  Estes, Verna M.;  Lee, Brian J.;  Bhagat, Govind;  Zha, Shan;  Calo, Eliezer
收藏  |  浏览/下载:54/0  |  提交时间:2020/07/03

Microbial nucleic acids are detected in samples of tissues and blood from more than 10,000 patients with cancer, and machine learning is used to show that these can be used to discriminate between and among different types of cancer, suggesting a new microbiome-based diagnostic approach.


Systematic characterization of the cancer microbiome provides the opportunity to develop techniques that exploit non-human, microorganism-derived molecules in the diagnosis of a major human disease. Following recent demonstrations that some types of cancer show substantial microbial contributions(1-10), we re-examined whole-genome and whole-transcriptome sequencing studies in The Cancer Genome Atlas(11) (TCGA) of 33 types of cancer from treatment-naive patients (a total of 18,116 samples) for microbial reads, and found unique microbial signatures in tissue and blood within and between most major types of cancer. These TCGA blood signatures remained predictive when applied to patients with stage Ia-IIc cancer and cancers lacking any genomic alterations currently measured on two commercial-grade cell-free tumour DNA platforms, despite the use of very stringent decontamination analyses that discarded up to 92.3% of total sequence data. In addition, we could discriminate among samples from healthy, cancer-free individuals (n = 69) and those from patients with multiple types of cancer (prostate, lung, and melanoma  100 samples in total) solely using plasma-derived, cell-free microbial nucleic acids. This potential microbiome-based oncology diagnostic tool warrants further exploration.


  
Revisiting the Hewlett and Hibbert (1963) Hillslope Drainage Experiment and Modeling Effects of Decadal Pedogenic Processes and Leaky Soil Boundary Conditions 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (1)
作者:  Lee, Raymond M.;  McGuire, Kevin J.;  Strahm, Brian D.;  Knoepp, Jennifer D.;  Jackson, C. Rhett;  Stewart, Ryan D.
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/02
The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight 期刊论文
SCIENCE, 2019, 364 (6436) : 144-+
作者:  Garrett-Bakelman, Francine E.;  Darshi, Manjula;  Green, Stefan J.;  Gur, Ruben C.;  Lin, Ling;  Macias, Brandon R.;  McKenna, Miles J.;  Meydan, Cem;  Mishra, Tejaswini;  Nasrini, Jad;  Piening, Brian D.;  Rizzardi, Lindsay F.;  Sharma, Kumar;  Siamwala, Jamila H.;  Taylor, Lynn;  Vitaterna, Martha Hotz;  Afkarian, Maryam;  Afshinnekoo, Ebrahim;  Ahadi, Sara;  Ambati, Aditya;  Arya, Maneesh;  Bezdan, Daniela;  Callahan, Colin M.;  Chen, Songjie;  Choi, Augustine M. K.;  Chlipala, George E.;  Contrepois, Kevin;  Covington, Marisa;  Crucian, Brian E.;  De Vivo, Immaculata;  Dinges, David F.;  Ebert, Douglas J.;  Feinberg, Jason I.;  Gandara, Jorge A.;  George, Kerry A.;  Goutsias, John;  Grills, George S.;  Hargens, Alan R.;  Heer, Martina;  Hillary, Ryan P.;  Hoofnagle, Andrew N.;  Hook, Vivian Y. H.;  Jenkinson, Garrett;  Jiang, Peng;  Keshavarzian, Ali;  Laurie, Steven S.;  Lee-McMullen, Brittany;  Lumpkins, Sarah B.;  MacKay, Matthew;  Maienschein-Cline, Mark G.;  Melnick, Ari M.;  Moore, Tyler M.;  Nakahira, Kiichi;  Patel, Hemal H.;  Pietrzyk, Robert;  Rao, Varsha;  Saito, Rintaro;  Salins, Denis N.;  Schilling, Jan M.;  Sears, Dorothy D.;  Sheridan, Caroline K.;  Stenger, Michael B.;  Tryggvadottir, Rakel;  Urban, Alexander E.;  Vaisar, Tomas;  Van Espen, Benjamin;  Zhang, Jing;  Ziegler, Michael G.;  Zwart, Sara R.;  Charles, John B.;  Kundrot, Craig E.;  Scott, Graham B. I.;  Bailey, Susan M.;  Basner, Mathias;  Feinberg, Andrew P.;  Lee, Stuart M. C.;  Mason, Christopher E.;  Mignot, Emmanuel;  Rana, Brinda K.;  Smith, Scott M.;  Snyder, Michael P.;  Turek, Fred W.
收藏  |  浏览/下载:38/0  |  提交时间:2019/11/27
Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity 期刊论文
SCIENCE, 2019, 363 (6434) : 1459-+
作者:  Scheele, Ben C.;  Pasmans, Frank;  Skerratt, Lee F.;  Berger, Lee;  Martel, An;  Beukema, Wouter;  Acevedo, Aldemar A.;  Burrowes, Patricia A.;  Carvalho, Tamilie;  Catenazzi, Alessandro;  De la Riva, Ignacio;  Fisher, Matthew C.;  Flechas, Sandra V.;  Foster, Claire N.;  Frias-Alvarez, Patricia;  Garner, Trenton W. J.;  Gratwicke, Brian;  Guayasamin, Juan M.;  Hirschfeld, Mareike;  Kolby, Jonathan E.;  Kosch, Tiffany A.;  La Marca, Enrique;  Lindenmayer, David B.;  Lips, Karen R.;  Longo, Ana V.;  Maneyro, Raul;  McDonald, Cait A.;  Mendelson, Joseph, III;  Palacios-Rodriguez, Pablo;  Parra-Olea, Gabriela;  Richards-Zawacki, Corinne L.;  Roedel, Mark-Oliver;  Rovito, Sean M.;  Soto-Azat, Claudio;  Toledo, Luis Felipe;  Voyles, Jamie;  Weldon, Che;  Whitfield, Steven M.;  Wilkinson, Mark;  Zamudio, Kelly R.;  Canessa, Stefano
收藏  |  浏览/下载:20/0  |  提交时间:2019/11/27
Endocytosis of commensal antigens by intestinal epithelial cells regulates mucosal T cell homeostasis 期刊论文
SCIENCE, 2019, 363 (6431) : 1058-+
作者:  Ladinsky, Mark S.;  Araujo, Leandro P.;  Zhang, Xiao;  Veltri, John;  Galan-Diez, Marta;  Soualhi, Salima;  Lee, Carolyn;  Irie, Koichiro;  Pinker, Elisha Y.;  Narushima, Seiko;  Bandyopadhyay, Sheila;  Nagayama, Manabu;  Elhenawy, Wael;  Coombes, Brian K.;  Ferraris, Ronaldo P.;  Honda, Kenya;  Iliev, Iliyan D.;  Gao, Nan;  Bjorkman, Pamela J.;  Ivanov, Ivaylo I.
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27