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Integrating environmental variability to broaden the research on coral responses to future ocean conditions 期刊论文
Global Change Biology, 2021
作者:  Maren Ziegler;  Andrea Anton;  Shannon G. Klein;  Nils Rä;  decker;  Nathan R. Geraldi;  Sebastian Schmidt-Roach;  Vincent Saderne;  Peter J. Mumby;  Maha J. Cziesielski;  Cecilia Martin;  Thomas L. Frö;  licher;  John M. Pandolfi;  David J. Suggett;  Manuel Aranda;  Carlos M. Duarte;  Christian R. Voolstra
收藏  |  浏览/下载:13/0  |  提交时间:2021/09/14
Projecting coral responses to intensifying marine heatwaves under ocean acidification 期刊论文
Global Change Biology, 2021
作者:  Shannon G. Klein;  Nathan R. Geraldi;  Andrea Anton;  Sebastian Schmidt-Roach;  Maren Ziegler;  Maha J. Cziesielski;  Cecilia Martin;  Nils Rä;  decker;  Thomas L. Frö;  licher;  Peter J. Mumby;  John M. Pandolfi;  David J. Suggett;  Christian R. Voolstra;  Manuel Aranda;  Carlos. M. Duarte
收藏  |  浏览/下载:12/0  |  提交时间:2021/08/30
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence 期刊论文
Science, 2021
作者:  Moritz U. G. Kraemer;  Verity Hill;  Christopher Ruis;  Simon Dellicour;  Sumali Bajaj;  John T. McCrone;  Guy Baele;  Kris V. Parag;  Anya Lindström Battle;  Bernardo Gutierrez;  Ben Jackson;  Rachel Colquhoun;  Áine O’Toole;  Brennan Klein;  Alessandro Vespignani;  COVID-19 Genomics UK Consortium‡;  Erik Volz;  Nuno R. Faria;  David M. Aanensen;  Nicholas J. Loman;  Louis du Plessis;  Simon Cauchemez;  Andrew Rambaut;  Samuel V. Scarpino;  Oliver G. Pybus
收藏  |  浏览/下载:12/0  |  提交时间:2021/08/25
Replication timing maintains the global epigenetic state in human cells 期刊论文
Science, 2021
作者:  Kyle N. Klein;  Peiyao A. Zhao;  Xiaowen Lyu;  Takayo Sasaki;  Daniel A. Bartlett;  Amar M. Singh;  Ipek Tasan;  Meng Zhang;  Lotte P. Watts;  Shin-ichiro Hiraga;  Toyoaki Natsume;  Xuemeng Zhou;  Timour Baslan;  Danny Leung;  Masato T. Kanemaki;  Anne D. Donaldson;  Huimin Zhao;  Stephen Dalton;  Victor G. Corces;  David M. Gilbert
收藏  |  浏览/下载:14/0  |  提交时间:2021/04/29
Neuropilin-1 is a host factor for SARS-CoV-2 infection 期刊论文
Science, 2020
作者:  James L. Daly;  Boris Simonetti;  Katja Klein;  Kai-En Chen;  Maia Kavanagh Williamson;  Carlos Antón-Plágaro;  Deborah K. Shoemark;  Lorena Simón-Gracia;  Michael Bauer;  Reka Hollandi;  Urs F. Greber;  Peter Horvath;  Richard B. Sessions;  Ari Helenius;  Julian A. Hiscox;  Tambet Teesalu;  David A. Matthews;  Andrew D. Davidson;  Brett M. Collins;  Peter J. Cullen;  Yohei Yamauchi
收藏  |  浏览/下载:13/0  |  提交时间:2020/11/20
Feasibility of blood testing combined with PET-CT to screen for cancer and guide intervention 期刊论文
Science, 2020
作者:  Anne Marie Lennon;  Adam H. Buchanan;  Isaac Kinde;  Andrew Warren;  Ashley Honushefsky;  Ariella T. Cohain;  David H. Ledbetter;  Fred Sanfilippo;  Kathleen Sheridan;  Dillenia Rosica;  Christian S. Adonizio;  Hee Jung Hwang;  Kamel Lahouel;  Joshua D. Cohen;  Christopher Douville;  Aalpen A. Patel;  Leonardo N. Hagmann;  David D. Rolston;  Nirav Malani;  Shibin Zhou;  Chetan Bettegowda;  David L. Diehl;  Bobbi Urban;  Christopher D. Still;  Lisa Kann;  Julie I. Woods;  Zachary M. Salvati;  Joseph Vadakara;  Rosemary Leeming;  Prianka Bhattacharya;  Carroll Walter;  Alex Parker;  Christoph Lengauer;  Alison Klein;  Cristian Tomasetti;  Elliot K. Fishman;  Ralph H. Hruban;  Kenneth W. Kinzler;  Bert Vogelstein;  Nickolas Papadopoulos
收藏  |  浏览/下载:18/0  |  提交时间:2020/07/06
A Major Collapse of Kangerlussuaq Glacier's Ice Tongue Between 1932 and 1933 in East Greenland 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2020, 47 (4)
作者:  Vermassen, Flor;  Bjork, Anders A.;  Sicre, Marie-Alexandrine;  Jaeger, John M.;  Wangner, David J.;  Kjeldsen, Kristian K.;  Siggaard-Andersen, Marie-Louise;  Klein, Vincent;  Mouginot, Jeremie;  Kjar, Kurt H.;  Andresen, Camilla S.
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/02
Tobacco smoking and somatic mutations in human bronchial epithelium 期刊论文
NATURE, 2020, 578 (7794) : 266-+
作者:  Sharma, Nikhil;  Flaherty, Kali;  Lezgiyeva, Karina;  Wagner, Daniel E.;  Klein, Allon M.;  Ginty, David D.
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

Whole-genome sequencing of normal bronchial epithelium from 16 individuals shows that tobacco smoking increases genomic heterogeneity, mutational burden and driver mutations, whereas stopping smoking promotes replenishment of the epithelium with near-normal cells.


Tobacco smoking causes lung cancer(1-3), a process that is driven by more than 60 carcinogens in cigarette smoke that directly damage and mutate DNA(4,5). The profound effects of tobacco on the genome of lung cancer cells are well-documented(6-10), but equivalent data for normal bronchial cells are lacking. Here we sequenced whole genomes of 632 colonies derived from single bronchial epithelial cells across 16 subjects. Tobacco smoking was the major influence on mutational burden, typically adding from 1,000 to 10,000 mutations per cell  massively increasing the variance both within and between subjects  and generating several distinct mutational signatures of substitutions and of insertions and deletions. A population of cells in individuals with a history of smoking had mutational burdens that were equivalent to those expected for people who had never smoked: these cells had less damage from tobacco-specific mutational processes, were fourfold more frequent in ex-smokers than current smokers and had considerably longer telomeres than their more-mutated counterparts. Driver mutations increased in frequency with age, affecting 4-14% of cells in middle-aged subjects who had never smoked. In current smokers, at least 25% of cells carried driver mutations and 0-6% of cells had two or even three drivers. Thus, tobacco smoking increases mutational burden, cell-to-cell heterogeneity and driver mutations, but quitting promotes replenishment of the bronchial epithelium from mitotically quiescent cells that have avoided tobacco mutagenesis.


  
The emergence of transcriptional identity in somatosensory neurons 期刊论文
NATURE, 2020, 577 (7790) : 392-+
作者:  Sharma, Nikhil;  Flaherty, Kali;  Lezgiyeva, Karina;  Wagner, Daniel E.;  Klein, Allon M.;  Ginty, David D.
收藏  |  浏览/下载:5/0  |  提交时间:2020/07/03

More than twelve morphologically and physiologically distinct subtypes of primary somatosensory neuron report salient features of our internal and external environments(1-4). It is unclear how specialized gene expression programs emerge during development to endow these subtypes with their unique properties. To assess the developmental progression of transcriptional maturation of each subtype of principal somatosensory neuron, we generated a transcriptomic atlas of cells traversing the primary somatosensory neuron lineage in mice. Here we show that somatosensory neurogenesis gives rise to neurons in a transcriptionally unspecialized state, characterized by co-expression of transcription factors that become restricted to select subtypes as development proceeds. Single-cell transcriptomic analyses of sensory neurons from mutant mice lacking transcription factors suggest that these broad-to-restricted transcription factors coordinate subtype-specific gene expression programs in subtypes in which their expression is maintained. We also show that neuronal targets are involved in this process  disruption of the prototypic target-derived neurotrophic factor NGF leads to aberrant subtype-restricted patterns of transcription factor expression. Our findings support a model in which cues that emanate from intermediate and final target fields promote neuronal diversification in part by transitioning cells from a transcriptionally unspecialized state to transcriptionally distinct subtypes by modulating the selection of subtype-restricted transcription factors.


  
Archaeological assessment reveals Earth's early transformation through land use 期刊论文
SCIENCE, 2019, 365 (6456) : 897-+
作者:  Stephens, Lucas;  Fuller, Dorian;  Boivin, Nicole;  Rick, Torben;  Gauthier, Nicolas;  Kay, Andrea;  Marwick, Ben;  Armstrong, Chelsey Geralda Denise;  Barton, C. Michael;  Denham, Tim;  Douglass, Kristina;  Driver, Jonathan;  Janz, Lisa;  Roberts, Patrick;  Rogers, J. Daniel;  Thakar, Heather;  Altaweel, Mark;  Johnson, Amber L.;  Sampietro Vattuone, Maria Marta;  Aldenderfer, Mark;  Archila, Sonia;  Artioli, Gilberto;  Bale, Martin T.;  Beach, Timothy;  Borrell, Ferran;  Braje, Todd;  Buckland, Philip I.;  Jimenez Cano, Nayeli Guadalupe;  Capriles, Jose M.;  Diez Castillo, Agustin;  Cilingiroglu, Ciler;  Cleary, Michelle Negus;  Conolly, James;  Coutros, Peter R.;  Covey, R. Alan;  Cremaschi, Mauro;  Crowther, Alison;  Der, Lindsay;  di Lernia, Savino;  Doershuk, John F.;  Doolittle, William E.;  Edwards, Kevin J.;  Erlandson, Jon M.;  Evans, Damian;  Fairbairn, Andrew;  Faulkner, Patrick;  Feinman, Gary;  Fernandes, Ricardo;  Fitzpatrick, Scott M.;  Fyfe, Ralph;  Garcea, Elena;  Goldstein, Steve;  Goodman, Reed Charles;  Guedes, Jade Dalpoim;  Herrmann, Jason;  Hiscock, Peter;  Hommel, Peter;  Horsburgh, K. Ann;  Hritz, Carrie;  Ives, John W.;  Junno, Aripekka;  Kahn, Jennifer G.;  Kaufman, Brett;  Kearns, Catherine;  Kidder, Tristram R.;  Lanoe, Francois;  Lawrence, Dan;  Lee, Gyoung-Ah;  Levin, Maureece J.;  Lindskoug, Henrik B.;  Antonio Lopez-Saez, Jose;  Macrae, Scott;  Marchant, Rob;  Marston, John M.;  McClure, Sarah;  Mccoy, Mark D.;  Miller, Alicia Ventresca;  Morrison, Michael;  Matuzeviciute, Giedre Motuzaite;  Mueller, Johannes;  Nayak, Ayushi;  Noerwidi, Sofwan;  Peres, Tanya M.;  Peterson, Christian E.;  Proctor, Lucas;  Randall, Asa R.;  Renette, Steve;  Schug, Gwen Robbins;  Ryzewski, Krysta;  Saini, Rakesh;  Scheinsohn, Vivian;  Schmidt, Peter;  Sebillaud, Pauline;  Seitsonen, Oula;  Simpson, Ian A.;  Soltysiak, Arkadiusz;  Speakman, Robert J.;  Spengler, Robert N.;  Steffen, Martina L.;  Storozum, Michael J.;  Strickland, Keir M.;  Thompson, Jessica;  Thurston, T. L.;  Ulm, Sean;  Ustunkaya, M. Cemre;  Welker, Martin H.;  West, Catherine;  Williams, Patrick Ryan;  Wright, David K.;  Wright, Nathan;  Zahir, Muhammad;  Zerboni, Andrea;  Beaudoin, Ella;  Garcia, Santiago Munevar;  Powell, Jeremy;  Thornton, Alexa;  Kaplan, Jed O.;  Gaillard, Marie-Jose;  Goldewijk, Kees Klein;  Ellis, Erle
收藏  |  浏览/下载:56/0  |  提交时间:2019/11/27