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Controlling quantum many-body dynamics in driven Rydberg atom arrays 期刊论文
Science, 2021
作者:  D. Bluvstein;  A. Omran;  H. Levine;  A. Keesling;  G. Semeghini;  S. Ebadi;  T. T. Wang;  A. A. Michailidis;  N. Maskara;  W. W. Ho;  S. Choi;  M. Serbyn;  M. Greiner;  V. Vuletić;  M. D. Lukin
收藏  |  浏览/下载:15/0  |  提交时间:2021/04/06
Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems 期刊论文
Science, 2021
作者:  Shahar Alon;  Daniel R. Goodwin;  Anubhav Sinha;  Asmamaw T. Wassie;  Fei Chen;  Evan R. Daugharthy;  Yosuke Bando;  Atsushi Kajita;  Andrew G. Xue;  Karl Marrett;  Robert Prior;  Yi Cui;  Andrew C. Payne;  Chun-Chen Yao;  Ho-Jun Suk;  Ru Wang;  Chih-Chieh Yu;  Paul Tillberg;  Paul Reginato;  Nikita Pak;  Songlei Liu;  Sukanya Punthambaker;  Eswar P. R. Iyer;  Richie E. Kohman;  Jeremy A. Miller;  Ed S. Lein;  Ana Lako;  Nicole Cullen;  Scott Rodig;  Karla Helvie;  Daniel L. Abravanel;  Nikhil Wagle;  Bruce E. Johnson;  Johanna Klughammer;  Michal Slyper;  Julia Waldman;  Judit Jané-Valbuena;  Orit Rozenblatt-Rosen;  Aviv Regev;  IMAXT Consortium19¶;  George M. Church;  Adam H. Marblestone;  Edward S. Boyden
收藏  |  浏览/下载:16/0  |  提交时间:2021/02/17
Inhibition of prostaglandin-degrading enzyme 15-PGDH rejuvenates aged muscle mass and strength 期刊论文
Science, 2021
作者:  A. R. Palla;  M. Ravichandran;  Y. X. Wang;  L. Alexandrova;  A. V. Yang;  P. Kraft;  C. A. Holbrook;  C. M. Schürch;  A. T. V. Ho;  H. M. Blau
收藏  |  浏览/下载:11/0  |  提交时间:2021/02/17
A framework for selecting and designing policies to reduce marine plastic pollution in developing countries 科技报告
来源:Environment for Development Initiative. 出版年: 2020
作者:  F. Alpizar;  F. Carlsson;  G. Lanza;  B. Carney;  R.C. Daniels;  M. Jaime;  T. Ho;  Z. Nie;  C. Salazar;  B. Tibesigwa;  S. Wahdera
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/06
Senolytic CAR T cells reverse senescence-associated pathologies 期刊论文
NATURE, 2020, 583 (7814) : 127-+
作者:  Cortez, Jessica T.;  Montauti, Elena;  Shifrut, Eric;  Gatchalian, Jovylyn;  Zhang, Yusi;  Shaked, Oren;  Xu, Yuanming;  Roth, Theodore L.;  Simeonov, Dimitre R.;  Zhang, Yana;  Chen, Siqi;  Li, Zhongmei;  Woo, Jonathan M.;  Ho, Josephine;  Vogel, Ian A.
收藏  |  浏览/下载:67/0  |  提交时间:2020/07/03

Cellular senescence is characterized by stable cell-cycle arrest and a secretory program that modulates the tissue microenvironment(1,2). Physiologically, senescence serves as a tumour-suppressive mechanism that prevents the expansion of premalignant cells(3,4)and has a beneficial role in wound-healing responses(5,6). Pathologically, the aberrant accumulation of senescent cells generates an inflammatory milieu that leads to chronic tissue damage and contributes to diseases such as liver and lung fibrosis, atherosclerosis, diabetes and osteoarthritis(1,7). Accordingly, eliminating senescent cells from damaged tissues in mice ameliorates the symptoms of these pathologies and even promotes longevity(1,2,8-10). Here we test the therapeutic concept that chimeric antigen receptor (CAR) T cells that target senescent cells can be effective senolytic agents. We identify the urokinase-type plasminogen activator receptor (uPAR)(11)as a cell-surface protein that is broadly induced during senescence and show that uPAR-specific CAR T cells efficiently ablate senescent cells in vitro and in vivo. CAR T cells that target uPAR extend the survival of mice with lung adenocarcinoma that are treated with a senescence-inducing combination of drugs, and restore tissue homeostasis in mice in which liver fibrosis is induced chemically or by diet. These results establish the therapeutic potential of senolytic CAR T cells for senescence-associated diseases.


Chimeric antigen receptor (CAR) T cells targeting uPAR, a cell-surface protein that is upregulated on senescent cells, eliminate senescent cells in vitro and in vivo and reduce liver fibrosis in mice.


  
Rapid reconstruction of SARS-CoV-2 using a synthetic genomics platform 期刊论文
NATURE, 2020
作者:  Touat, Mehdi;  Li, Yvonne Y.;  Boynton, Adam N.;  Spurr, Liam F.;  Iorgulescu, J. Bryan;  Bohrson, Craig L.;  Cortes-Ciriano, Isidro;  Birzu, Cristina;  Geduldig, Jack E.;  Pelton, Kristine;  Lim-Fat, Mary Jane;  Pal, Sangita;  Ferrer-Luna, Ruben;  Ramkissoon, Shakti H.;  Dubois, Frank;  Bellamy, Charlotte;  Currimjee, Naomi;  Bonardi, Juliana;  Qian Kenin;  Ho, Patricia;  Malinowski, Seth;  Taquet, Leon;  Jones, Robert E.;  Shetty, Aniket;  Chow, Kin-Hoe;  Sharaf, Radwa;  Pavlick, Dean;  Albacker, Lee A.;  Younan, Nadia;  Baldini, Capucine;  Verreault, Maite;  Giry, Marine;  Guillerm, Erell;  Ammari, Samy;  Beuvon, Frederic;  Mokhtari, Karima;  Alentorn, Agusti;  Dehais, Caroline;  Houillier, Caroline;  Laigle-Donadey, Florence;  Psimaras, Dimitri;  Lee, Eudocia Q.;  Nayak, Lakshmi;  McFaline-Figueroa, J. Ricardo;  Carpentier, Alexandre;  Cornu, Philippe;  Capelle, Laurent;  Mathon, Bertrand;  Barnholtz-Sloan, Jill S.;  Chakravarti, Arnab;  Bi, Wenya Linda;  Chiocca, E. Antonio;  Fehnel, Katie Pricola;  Alexandrescu, Sanda;  Chi, Susan N.;  Haas-Kogan, Daphne;  Batchelor, Tracy T.;  Frampton, Garrett M.;  Alexander, Brian M.;  Huang, Raymond Y.;  Ligon, Azra H.;  Coulet, Florence;  Delattre, Jean-Yves;  Hoang-Xuan, Khe;  Meredith, David M.;  Santagata, Sandro;  Duval, Alex;  Sanson, Marc;  Cherniack, Andrew D.;  Wen, Patrick Y.;  Reardon, David A.;  Marabelle, Aurelien;  Park, Peter J.;  Idbaih, Ahmed;  Beroukhim, Rameen;  Bandopadhayay, Pratiti;  Bielle, Franck;  Ligon, Keith L.
收藏  |  浏览/下载:13/0  |  提交时间:2020/07/03

Reverse genetics has been an indispensable tool to gain insights into viral pathogenesis and vaccine development. The genomes of large RNA viruses, such as those from coronaviruses, are cumbersome to clone and manipulate inEscherichia coliowing to the size and occasional instability of the genome(1-3). Therefore, an alternative rapid and robust reverse-genetics platform for RNA viruses would benefit the research community. Here we show the full functionality of a yeast-based synthetic genomics platform to genetically reconstruct diverse RNA viruses, including members of theCoronaviridae,FlaviviridaeandPneumoviridaefamilies. Viral subgenomic fragments were generated using viral isolates, cloned viral DNA, clinical samples or synthetic DNA, and these fragments were then reassembled in one step inSaccharomyces cerevisiaeusing transformation-associated recombination cloning to maintain the genome as a yeast artificial chromosome. T7 RNA polymerase was then used to generate infectious RNA to rescue viable virus. Using this platform, we were able to engineer and generate chemically synthesized clones of the virus, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)(4), which has caused the recent pandemic of coronavirus disease (COVID-19), in only a week after receipt of the synthetic DNA fragments. The technical advance that we describe here facilitates rapid responses to emerging viruses as it enables the real-time generation and functional characterization of evolving RNA virus variants during an outbreak.


A yeast-based synthetic genomics platform is used to reconstruct and characterize large RNA viruses from synthetic DNA fragments  this technique will facilitate the rapid analysis of RNA viruses, such as SARS-CoV-2, during an outbreak.


  
Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids 期刊论文
NATURE, 2020
作者:  Nixon, Christopher C.;  Mavigner, Maud;  Sampey, Gavin C.;  Brooks, Alyssa D.;  Spagnuolo, Rae Ann;  Irlbeck, David M.;  Mattingly, Cameron;  Ho, Phong T.;  Schoof, Nils;  Cammon, Corinne G.;  Tharp, Greg K.;  Kanke, Matthew;  Wang, Zhang;  Cleary, Rachel A.;  Upadhyay, Amit A.;  De, Chandrav;  Wills, Saintedym R.;  Falcinelli, Shane D.;  Galardi, Cristin;  Walum, Hasse;  Schramm, Nathaniel J.;  Deutsch, Jennifer;  Lifson, Jeffrey D.;  Fennessey, Christine M.;  Keele, Brandon F.;  Jean, Sherrie;  Maguire, Sean;  Liao, Baolin;  Browne, Edward P.;  Ferris, Robert G.;  Brehm, Jessica H.;  Favre, David;  Vanderford, Thomas H.;  Bosinger, Steven E.;  Jones, Corbin D.;  Routy, Jean-Pierre;  Archin, Nancie M.;  Margolis, David M.;  Wahl, Angela;  Dunham, Richard M.;  Silvestri, Guido;  Chahroudi, Ann;  Garcia, J. Victor
收藏  |  浏览/下载:34/0  |  提交时间:2020/07/03

Single-cell RNA sequencing and spatial transcriptomics reveal that the somitogenesis clock is active in mouse gastruloids, which can be induced to generate somites with the correct rostral-caudal patterning.


Gastruloids are three-dimensional aggregates of embryonic stem cells that display key features of mammalian development after implantation, including germ-layer specification and axial organization(1-3). To date, the expression pattern of only a small number of genes in gastruloids has been explored with microscopy, and the extent to which genome-wide expression patterns in gastruloids mimic those in embryos is unclear. Here we compare mouse gastruloids with mouse embryos using single-cell RNA sequencing and spatial transcriptomics. We identify various embryonic cell types that were not previously known to be present in gastruloids, and show that key regulators of somitogenesis are expressed similarly between embryos and gastruloids. Using live imaging, we show that the somitogenesis clock is active in gastruloids and has dynamics that resemble those in vivo. Because gastruloids can be grown in large quantities, we performed a small screen that revealed how reduced FGF signalling induces a short-tail phenotype in embryos. Finally, we demonstrate that embedding in Matrigel induces gastruloids to generate somites with the correct rostral-caudal patterning, which appear sequentially in an anterior-to-posterior direction over time. This study thus shows the power of gastruloids as a model system for exploring development and somitogenesis in vitro in a high-throughput manner.


  
Alfv茅nic velocity spikes and rotational flows in the near-Sun solar wind 期刊论文
Nature, 2019, 576: 228-231
作者:  J. C. Kasper;  S. D. Bale;  J. W. Belcher;  M. Berthomier;  A. W. Case;  B. D. G. Chandran;  D. W. Curtis;  D. Gallagher;  S. P. Gary;  L. Golub;  J. S. Halekas;  G. C. Ho;  T. S. Horbury;  Q. Hu;  J. Huang;  K. G. Klein;  K. E. Korreck;  D. E. Larson;  R. Livi;  B. Maruca;  B. Lavraud;  P. Louarn;  M. Maksimovic;  M. Martinovic;  D. McGinnis;  N. V. Pogorelov;  J. D. Richardson;  R. M. Skoug;  J. T. Steinberg;  M. L. Stevens;  A. Szabo;  M. Velli;  P. L. Whittlesey;  K. H. Wright;  G. P. Zank;  R. J. MacDowall;  D. J. McComas;  R. L. McNutt Jr;  M. Pulupa;  N. E. Raouafi;  N. A. Schwadron
收藏  |  浏览/下载:14/0  |  提交时间:2020/04/16
Tropical cyclone sensitivities to CO2 doubling: roles of atmospheric resolution, synoptic variability and background climate changes 期刊论文
CLIMATE DYNAMICS, 2019, 53: 5999-6033
作者:  Vecchi, Gabriel A.;  Delworth, Thomas L.;  Murakami, Hiroyuki;  Underwood, Seth D.;  Wittenberg, Andrew T.;  Zeng, Fanrong;  Zhang, Wei;  Baldwin, Jane W.;  Bhatia, Kieran T.;  Cooke, William;  He, Jie;  Kapnick, Sarah B.;  Knutson, Thomas R.;  Villarini, Gabriele;  van der Wiel, Karin;  Anderson, Whit;  Balaji, V.;  Chen, Jan-Huey;  Dixon, Keith W.;  Gudgel, Rich;  Harris, Lucas M.;  Jia, Liwei;  Johnson, Nathaniel C.;  Lin, Shian-Jiann;  Liu, Maofeng;  Ng, Ching Ho Justin;  Rosati, Anthony;  Smith, James A.;  Yang, Xiaosong
收藏  |  浏览/下载:15/0  |  提交时间:2019/11/27
Images from the surface of asteroid Ryugu show rocks similar to carbonaceous chondrite meteorites 期刊论文
SCIENCE, 2019, 365 (6455) : 817-+
作者:  Jaumann, R.;  Schmitz, N.;  Ho, T. -M.;  Schroder, S. E.;  Otto, K. A.;  Stephan, K.;  Elgner, S.;  Krohn, K.;  Preusker, F.;  Scholten, F.;  Biele, J.;  Ulamec, S.;  Krause, C.;  Sugita, S.;  Matz, K. -D.;  Roatsch, T.;  Parekh, R.;  Mottola, S.;  Grott, M.;  Michel, P.;  Trauthan, F.;  Koncz, A.;  Michaelis, H.;  Lange, C.;  Grundmann, J. T.;  Maibaum, M.;  Sasaki, K.;  Wolff, F.;  Reill, J.;  Moussi-Soffys, A.;  Lorda, L.;  Neumann, W.;  Vincent, J. -B.;  Wagner, R.;  Bibring, J. -P.;  Kameda, S.;  Yano, H.;  Watanabe, S.;  Yoshikawa, M.;  Tsuda, Y.;  Okada, T.;  Yoshimitsu, T.;  Mimasu, Y.;  Saiki, T.;  Yabuta, H.;  Rauer, H.;  Honda, R.;  Morota, T.;  Yokota, Y.;  Kouyama, T.
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27