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Reply to: Evidence confirms an anthropic origin of Amazonian Dark Earths 期刊论文
Nature Communications, 2022
作者:  Silva, Lucas C. R.;  Corrê;  a, Rodrigo Studart;  Wright, Jamie L.;  Bomfim, Barbara;  Hendricks, Lauren B.;  Gavin, Daniel G.;  Muniz, Aleksander Westphal;  Martins, Gilvan Coimbra;  Motta, Antô;  nio Carlos Vargas;  Barbosa, Julierme Zimmer;  de Freitas Melo, Vander;  Young, Scott D.;  Broadley, Martin R.;  Santos, Roberto Ventura
收藏  |  浏览/下载:10/0  |  提交时间:2022/06/24
A new hypothesis for the origin of Amazonian Dark Earths 期刊论文
Nature Communications, 2021
作者:  Lucas C. R. Silva;  Rodrigo Studart Corrê;  a;  Jamie L. Wright;  Barbara Bomfim;  Lauren Hendricks;  Daniel G. Gavin;  Aleksander Westphal Muniz;  Gilvan Coimbra Martins;  Antô;  nio Carlos Vargas Motta;  Julierme Zimmer Barbosa;  Vander de Freitas Melo;  Scott D. Young;  Martin R. Broadley;  Roberto Ventura Santos
收藏  |  浏览/下载:11/0  |  提交时间:2021/01/15
The human tumor microbiome is composed of tumor type–specific intracellular bacteria 期刊论文
Science, 2020
作者:  Deborah Nejman;  Ilana Livyatan;  Garold Fuks;  Nancy Gavert;  Yaara Zwang;  Leore T. Geller;  Aviva Rotter-Maskowitz;  Roi Weiser;  Giuseppe Mallel;  Elinor Gigi;  Arnon Meltser;  Gavin M. Douglas;  Iris Kamer;  Vancheswaran Gopalakrishnan;  Tali Dadosh;  Smadar Levin-Zaidman;  Sofia Avnet;  Tehila Atlan;  Zachary A. Cooper;  Reetakshi Arora;  Alexandria P. Cogdill;  Md Abdul Wadud Khan;  Gabriel Ologun;  Yuval Bussi;  Adina Weinberger;  Maya Lotan-Pompan;  Ofra Golani;  Gili Perry;  Merav Rokah;  Keren Bahar-Shany;  Elisa A. Rozeman;  Christian U. Blank;  Anat Ronai;  Ron Shaoul;  Amnon Amit;  Tatiana Dorfman;  Ran Kremer;  Zvi R. Cohen;  Sagi Harnof;  Tali Siegal;  Einav Yehuda-Shnaidman;  Einav Nili Gal-Yam;  Hagit Shapira;  Nicola Baldini;  Morgan G. I. Langille;  Alon Ben-Nun;  Bella Kaufman;  Aviram Nissan;  Talia Golan;  Maya Dadiani;  Keren Levanon;  Jair Bar;  Shlomit Yust-Katz;  Iris Barshack;  Daniel S. Peeper;  Dan J. Raz;  Eran Segal;  Jennifer A. Wargo;  Judith Sandbank;  Noam Shental;  Ravid Straussman
收藏  |  浏览/下载:21/0  |  提交时间:2020/06/01
Live-animal imaging of native haematopoietic stem and progenitor cells 期刊论文
NATURE, 2020, 578 (7794) : 278-+
作者:  Gerstung, Moritz;  Jolly, Clemency;  Leshchiner, Ignaty;  Dentro, Stefan C.;  Gonzalez, Santiago;  Rosebrock, Daniel;  Mitchell, Thomas J.;  Rubanova, Yulia;  Anur, Pavana;  Yu, Kaixian;  Tarabichi, Maxime;  Deshwar, Amit;  Wintersinger, Jeff;  Kleinheinz, Kortine;  Vazquez-Garcia, Ignacio;  Haase, Kerstin;  Jerman, Lara;  Sengupta, Subhajit;  Macintyre, Geoff;  Malikic, Salem;  Donmez, Nilgun;  Livitz, Dimitri G.;  Cmero, Marek;  Demeulemeester, Jonas;  Schumacher, Steven;  Fan, Yu;  Yao, Xiaotong;  Lee, Juhee;  Schlesner, Matthias;  Boutros, Paul C.;  Bowtell, David D.;  Zhu, Hongtu;  Getz, Gad;  Imielinski, Marcin;  Beroukhim, Rameen;  Sahinalp, S. Cenk;  Ji, Yuan;  Peifer, Martin;  Markowetz, Florian;  Mustonen, Ville;  Yuan, Ke;  Wang, Wenyi;  Morris, Quaid D.;  Spellman, Paul T.;  Wedge, David C.;  Van Loo, Peter;  Deshwar, Amit G.;  Adams, David J.;  Campbell, Peter J.;  Cao, Shaolong;  Christie, Elizabeth L.;  Cun, Yupeng;  Dawson, Kevin J.;  Drews, Ruben M.;  Eils, Roland;  Fittall, Matthew;  Garsed, Dale W.;  Ha, Gavin;  Lee-Six, Henry;  Martincorena, Inigo;  Oesper, Layla;  Peto, Myron;  Raphael, Benjamin J.;  Salcedo, Adriana;  Shi, Ruian;  Shin, Seung Jun;  Spiro, Oliver;  Stein, Lincoln D.;  Vembu, Shankar;  Wheeler, David A.;  Yang, Tsun-Po
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The biology of haematopoietic stem cells (HSCs) has predominantly been studied under transplantation conditions(1,2). It has been particularly challenging to study dynamic HSC behaviour, given that the visualization of HSCs in the native niche in live animals has not, to our knowledge, been achieved. Here we describe a dual genetic strategy in mice that restricts reporter labelling to a subset of the most quiescent long-term HSCs (LT-HSCs) and that is compatible with current intravital imaging approaches in the calvarial bone marrow(3-5). We show that this subset of LT-HSCs resides close to both sinusoidal blood vessels and the endosteal surface. By contrast, multipotent progenitor cells (MPPs) show greater variation in distance from the endosteum and are more likely to be associated with transition zone vessels. LT-HSCs are not found in bone marrow niches with the deepest hypoxia and instead are found in hypoxic environments similar to those of MPPs. In vivo time-lapse imaging revealed that LT-HSCs at steady-state show limited motility. Activated LT-HSCs show heterogeneous responses, with some cells becoming highly motile and a fraction of HSCs expanding clonally within spatially restricted domains. These domains have defined characteristics, as HSC expansion is found almost exclusively in a subset of bone marrow cavities with bone-remodelling activity. By contrast, cavities with low bone-resorbing activity do not harbour expanding HSCs. These findings point to previously unknown heterogeneity within the bone marrow microenvironment, imposed by the stages of bone turnover. Our approach enables the direct visualization of HSC behaviours and dissection of heterogeneity in HSC niches.


A dual genetic strategy enables the labelling and in vivo imaging of native long-term haematopoietic stem cells in the mouse calvarial bone marrow.


  
Reinforcing the concept of agenda-driven science: a response to Rohlf 期刊论文
FRONTIERS IN ECOLOGY AND THE ENVIRONMENT, 2019, 17 (10) : 556-557
作者:  Gutierrez, R. J.;  Jones, Gavin;  Redpath, Steve M.;  Franklin, Alan B.;  Simberloff, Daniel;  Turner, Monica G.;  Radeloff, Volker C.;  White, Gary C.;  Peery, M. Zachariah
收藏  |  浏览/下载:7/0  |  提交时间:2020/02/17
A defined mechanistic correlate of protection against Plasmodium falciparum malaria in non-human primates 期刊论文
NATURE COMMUNICATIONS, 2019, 10
作者:  Douglas, Alexander D.;  Baldeviano, G. Christian;  Jin, Jing;  Miura, Kazutoyo;  Diouf, Ababacar;  Zenonos, Zenon A.;  Ventocilla, Julio A.;  Silk, Sarah E.;  Marshall, Jennifer M.;  Alanine, Daniel G. W.;  Wang, Chuan;  Edwards, Nick J.;  Leiva, Karina P.;  Gomez-Puerta, Luis A.;  Lucas, Carmen M.;  Wright, Gavin J.;  Long, Carole A.;  Royale, Joseph M.;  Draper, Simon J.
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
The conundrum of agenda-driven science in conservation 期刊论文
FRONTIERS IN ECOLOGY AND THE ENVIRONMENT, 2019, 17 (2) : 80-82
作者:  Peery, M. Zachariah;  Jones, Gavin M.;  Gutierrez, R. J.;  Redpath, Steve M.;  Franklin, Alan B.;  Simberloff, Daniel;  Turner, Monica G.;  Radeloff, Volker C.;  White, Gary C.
收藏  |  浏览/下载:10/0  |  提交时间:2019/04/09
Quantitative mass imaging of single biological macromolecules 期刊论文
SCIENCE, 2018, 360 (6387) : 423-+
作者:  Young, Gavin;  Hundt, Nikolas;  Cole, Daniel;  Fineberg, Adam;  Andrecka, Joanna;  Tyler, Andrew;  Olerinyova, Anna;  Ansari, Ayla;  Marklund, Erik G.;  Collier, Miranda P.;  Chandler, Shane A.;  Tkachenko, Olga;  Allen, Joel;  Crispin, Max;  Billington, Neil;  Takagi, Yasuharu;  Sellers, James R.;  Eichmann, Cedric;  Selenko, Philipp;  Frey, Lukas;  Riek, Roland;  Galpin, Martin R.;  Struwe, Weston B.;  Benesch, Justin L. P.;  Kukura, Philipp
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Late Quaternary climatic controls on erosion rates and geomorphic processes in western Oregon, USA 期刊论文
GEOLOGICAL SOCIETY OF AMERICA BULLETIN, 2017, 129
作者:  Marshall, Jill A.;  Roering, Joshua J.;  Gavin, Daniel G.;  Granger, Darryl E.
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09