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Origin of complexity in haemoglobin evolution 期刊论文
NATURE, 2020
作者:  Cheema, Suraj S.;  Kwon, Daewoong;  Shanker, Nirmaan;  dos Reis, Roberto;  Hsu, Shang-Lin;  Xiao, Jun;  Zhang, Haigang;  Wagner, Ryan;  Datar, Adhiraj;  McCarter, Margaret R.;  Serrao, Claudy R.;  Yadav, Ajay K.;  Karbasian, Golnaz;  Hsu, Cheng-Hsiang;  Tan, Ava J.;  Wang, Li-Chen;  Thakare, Vishal;  Zhang, Xiang;  Mehta, Apurva;  Karapetrova, Evguenia;  Chopdekar, Rajesh, V;  Shafer, Padraic;  Arenholz, Elke;  Hu, Chenming;  Proksch, Roger;  Ramesh, Ramamoorthy;  Ciston, Jim;  Salahuddin, Sayeef
收藏  |  浏览/下载:50/0  |  提交时间:2020/07/03

Most proteins associate into multimeric complexes with specific architectures(1,2), which often have functional properties such as cooperative ligand binding or allosteric regulation(3). No detailed knowledge is available about how any multimer and its functions arose during evolution. Here we use ancestral protein reconstruction and biophysical assays to elucidate the origins of vertebrate haemoglobin, a heterotetramer of paralogous alpha- and beta-subunits that mediates respiratory oxygen transport and exchange by cooperatively binding oxygen with moderate affinity. We show that modern haemoglobin evolved from an ancient monomer and characterize the historical '  missing link'  through which the modern tetramer evolved-a noncooperative homodimer with high oxygen affinity that existed before the gene duplication that generated distinct alpha- and beta-subunits. Reintroducing just two post-duplication historical substitutions into the ancestral protein is sufficient to cause strong tetramerization by creating favourable contacts with more ancient residues on the opposing subunit. These surface substitutions markedly reduce oxygen affinity and even confer cooperativity, because an ancient linkage between the oxygen binding site and the multimerization interface was already an intrinsic feature of the protein'  s structure. Our findings establish that evolution can produce new complex molecular structures and functions via simple genetic mechanisms that recruit existing biophysical features into higher-level architectures.


Experimental analysis of reconstructed ancestral globins reveals that haemoglobin'  s complex tetrameric structure and oxygen-binding functions evolved by simple genetic and biophysical mechanisms.


  
California鈥檚 methane super-emitters 期刊论文
Nature, 2019, 575: 180-184
作者:  Riley M. Duren;  Andrew K. Thorpe;  Kelsey T. Foster;  Talha Rafiq;  Francesca M. Hopkins;  Vineet Yadav;  Brian D. Bue;  David R. Thompson;  Stephen Conley;  Nadia K. Colombi;  Christian Frankenberg;  Ian B. McCubbin;  Michael L. Eastwood;  Matthias Falk;  Jorn D. Herner;  Bart E. Croes;  Robert O. Green;  Charles E. Miller
收藏  |  浏览/下载:15/0  |  提交时间:2019/11/27
A second source of repeating fast radio bursts 期刊论文
NATURE, 2019, 566 (7743) : 235-+
作者:  Amiri, M.;  Bandura, K.;  Bhardwaj, M.;  Boubel, P.;  Boyce, M. M.;  Boyle, P. J.;  Brar, C.;  Burhanpurkar, M.;  Cassanelli, T.;  Chawla, P.;  Cliche, J. F.;  Cubranic, D.;  Deng, M.;  Denman, N.;  Dobbs, M.;  Fandino, M.;  Fonseca, E.;  Gaensler, B. M.;  Gilbert, A. J.;  Gill, A.;  Giri, U.;  Good, D. C.;  Halpern, M.;  Hanna, D. S.;  Hill, A. S.;  Hinshaw, G.;  Hofer, C.;  Josephy, A.;  Kaspi, V. M.;  Landecker, T. L.;  Lang, D. A.;  Lin, H-H.;  Masui, K. W.;  Mckinven, R.;  Mena-Parra, J.;  Merryfield, M.;  Michilli, D.;  Milutinovic, N.;  Moatti, C.;  Naidu, A.;  Newburgh, L. B.;  Ng, C.;  Patel, C.;  Pen, U.;  Pinsonneault-Marotte, T.;  Pleunis, Z.;  Rafiei-Ravandi, M.;  Rahman, M.;  Ransom, S. M.;  Renard, A.;  Scholz, P.;  Shaw, J. R.;  Siegel, S. R.;  Smith, K. M.;  Stairs, I. H.;  Tendulkar, S. P.;  Tretyakov, I.;  Vanderlinde, K.;  Yadav, P.
收藏  |  浏览/下载:14/0  |  提交时间:2019/11/27
Impacts of household sources on air pollution at village and regional scales in India 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2019, 19 (11) : 7719-7742
作者:  Rooney, Brigitte;  Zhao, Ran;  Wang, Yuan;  Bates, Kelvin H.;  Pillarisetti, Ajay;  Sharma, Sumit;  Kundu, Seema;  Bond, Tami C.;  Lam, Nicholas L.;  Ozaltun, Bora;  Xu, Li;  Goel, Varun;  Fleming, Lauren T.;  Weltman, Robert;  Meinardi, Simone;  Blake, Donald R.;  Nizkorodov, Sergey A.;  Edwards, Rufus D.;  Yadav, Ankit;  Arora, Narendra K.;  Smith, Kirk R.;  Seinfeld, John H.
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/26
Emissions from village cookstoves in Haryana, India, and their potential impacts on air quality 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2018, 18 (20) : 15169-15182
作者:  Flemings, Lauren T.;  Weltman, Robert;  Yadav, Ankit;  Edwards, Rufus D.;  Arora, Narendra K.;  Pillarisetti, Ajay;  Meinardi, Simone;  Smith, Kirk R.;  Blake, Donald R.;  Nizkorodov, Sergey A.
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
Rapid transition from continental breakup to igneous oceanic crust in the South China Sea 期刊论文
NATURE GEOSCIENCE, 2018, 11 (10) : 782-+
作者:  Larsen, H. C.;  Mohn, G.;  Nirrengarten, M.;  Sun, Z.;  Stock, J.;  Jian, Z.;  Klaus, A.;  Alvarez-Zarikian, C. A.;  Boaga, J.;  Bowden, S. A.;  Briais, A.;  Chen, Y.;  Cukur, D.;  Dadd, K.;  Ding, W.;  Dorais, M.;  Ferre, E. C.;  Ferreira, F.;  Furusawa, A.;  Gewecke, A.;  Hinojosa, J.;  Hofig, T. W.;  Hsiung, K. H.;  Huang, B.;  Huang, E.;  Huang, X. L.;  Jiang, S.;  Jin, H.;  Johnson, B. G.;  Kurzawski, R. M.;  Lei, C.;  Li, B.;  Li, L.;  Li, Y.;  Lin, J.;  Liu, C.;  Liu, Z.;  Luna, A. J.;  Lupi, C.;  McCarthy, A.;  Ningthoujam, L.;  Osono, N.;  Peate, D. W.;  Persaud, P.;  Qiu, N.;  Robinson, C.;  Satolli, S.;  Sauermilch, I;  Schindlbeck, J. C.;  Skinner, S.;  Straub, S.;  Su, X.;  Su, C.;  Tian, L.;  Van Der Zwan, F. M.;  Wan, S.;  Wu, H.;  Xiang, R.;  Yadav, R.;  Yi, L.;  Yu, P. S.;  Zhang, C.;  Zhang, J.;  Zhang, Y.;  Zhao, N.;  Zhong, G.;  Zhong, L.
收藏  |  浏览/下载:13/0  |  提交时间:2019/04/09
Molecular composition of particulate matter emissions from dung and brushwood burning household cookstoves in Haryana, India 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2018, 18 (4) : 2461-2480
作者:  Fleming, Lauren T.;  Lin, Peng;  Laskin, Alexander;  Laskin, Julia;  Weltman, Robert;  Edwards, Rufus D.;  Arora, Narendra K.;  Yadav, Ankit;  Meinardi, Simone;  Blake, Donald R.;  Pillarisetti, Ajay;  Smith, Kirk R.;  Nizkorodov, Sergey A.
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
Carbon dioxide and methane measurements from the Los Angeles Megacity Carbon Project - Part 1: calibration, urban enhancements, and uncertainty estimates 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2017, 17 (13)
作者:  Verhulst, Kristal R.;  Karion, Anna;  Kim, Jooil;  Salameh, Peter K.;  Keeling, Ralph F.;  Newman, Sally;  Miller, John;  Sloop, Christopher;  Pongetti, Thomas;  Rao, Preeti;  Wong, Clare;  Hopkins, Francesca M.;  Yadav, Vineet;  Weiss, Ray F.;  Duren, Riley M.;  Miller, Charles E.
收藏  |  浏览/下载:17/0  |  提交时间:2019/04/09