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Rapid hydrolysis of tertiary isoprene nitrate efficiently removes NOx from the atmosphere 期刊论文
Proceedings of the National Academy of Science, 2020
作者:  Krystal T. Vasquez;  John D. Crounse;  Benjamin C. Schulze;  Kelvin H. Bates;  Alexander P. Teng;  Lu Xu;  Hannah M. Allen;  Paul O. Wennberg
收藏  |  浏览/下载:11/0  |  提交时间:2020/12/22
Constraining remote oxidation capacity with ATom observations 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (13) : 7753-7781
作者:  Travis, Katherine R.;  Heald, Colette L.;  Allen, Hannah M.;  Apel, Eric C.;  Arnold, Stephen R.;  Blake, Donald R.;  Brune, William H.;  Chen, Xin;  Commane, Roisin;  Crounse, John D.;  Daube, Bruce C.;  Diskin, Glenn S.;  Elkins, James W.;  Evans, Mathew J.;  Hall, Samuel R.;  Hintsa, Eric J.;  Hornbrook, Rebecca S.;  Kasibhatla, Prasad S.;  Kim, Michelle J.;  Luo, Gan;  McKain, Kathryn;  Millet, Dylan B.;  Moore, Fred L.;  Peischl, Jeffrey;  Ryerson, Thomas B.;  Sherwen, Tomas;  Thames, Alexander B.;  Ullmann, Kirk;  Wang, Xuan;  Wennberg, Paul O.;  Wolfe, Glenn M.;  Yu, Fangqun
收藏  |  浏览/下载:48/0  |  提交时间:2020/08/18
Human settlement of East Polynesia earlier, incremental, and coincident with prolonged South Pacific drought 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (16) : 8813-8819
作者:  Sear, David A.;  Allen, Melinda S.;  Hassall, Jonathan D.;  Maloney, Ashley E.;  Langdon, Peter G.;  Morrison, Alex E.;  Henderson, Andrew C. G.;  Mackay, Helen;  Croudace, Ian W.;  Clarke, Charlotte;  Sachs, Julian P.;  Macdonald, Georgiana;  Chiverrell, Richard C.;  Leng, Melanie J.;  Cisneros-Dozal, L. M.;  Fonville, Thierry
收藏  |  浏览/下载:14/0  |  提交时间:2020/05/13
Polynesian voyaging  East Polynesian colonization  biomarkers  drought  palaeoclimate  
Missing OH reactivity in the global marine boundary layer 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (6) : 4013-4029
作者:  Thames, Alexander B.;  Brune, William H.;  Miller, David O.;  Allen, Hannah M.;  Apel, Eric C.;  Blake, Donald R.;  Bui, T. Paul;  Commane, Roisin;  Crounse, John D.;  Daube, Bruce C.;  Diskin, Glenn S.;  DiGangi, Joshua P.;  Elkins, JamesW.;  Hall, Samuel R.;  Hanisco, Thomas F.;  Hannun, Reem A.;  Hintsa, Eric;  Hornbrook, Rebecca S.;  Kim, Michelle J.;  McKain, Kathryn;  Moore, Fred L.;  Nicely, Julie M.;  Peischl, Jeffrey;  Ryerson, Thomas B.;  St Clair, Jason M.;  Sweeney, Colm;  Teng, Alex;  Thompson, Chelsea R.;  Ullmann, Kirk;  Wennberg, Paul O.;  Wolfe, Glenn M.
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/02
A reference map of the human binary protein interactome 期刊论文
NATURE, 2020, 580 (7803) : 402-+
作者:  Fan, Chen;  Sukomon, Nattakan;  Flood, Emelie;  Rheinberger, Jan;  Allen, Toby W.;  Nimigean, Crina M.
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/03

Global insights into cellular organization and genome function require comprehensive understanding of the interactome networks that mediate genotype-phenotype relationships(1,2). Here we present a human '  all-by-all'  reference interactome map of human binary protein interactions, or '  HuRI'  . With approximately 53,000 protein-protein interactions, HuRI has approximately four times as many such interactions as there are high-quality curated interactions from small-scale studies. The integration of HuRI with genome(3), transcriptome(4) and proteome(5) data enables cellular function to be studied within most physiological or pathological cellular contexts. We demonstrate the utility of HuRI in identifying the specific subcellular roles of protein-protein interactions. Inferred tissue-specific networks reveal general principles for the formation of cellular context-specific functions and elucidate potential molecular mechanisms that might underlie tissue-specific phenotypes of Mendelian diseases. HuRI is a systematic proteome-wide reference that links genomic variation to phenotypic outcomes.


  
A pneumonia outbreak associated with a new coronavirus of probable bat origin 期刊论文
NATURE, 2020, 579 (7798) : 270-+
作者:  Kirchner, James W.;  Berghuijs, Wouter R.;  Allen, Scott T.;  Hrachowitz, Markus;  Hut, Rolf;  Rizzo, Donna M.
收藏  |  浏览/下载:74/0  |  提交时间:2020/07/03

Since the outbreak of severe acute respiratory syndrome (SARS) 18 years ago, a large number of SARS-related coronaviruses (SARSr-CoVs) have been discovered in their natural reservoir host, bats(1-4). Previous studies have shown that some bat SARSr-CoVs have the potential to infect humans(5-7). Here we report the identification and characterization of a new coronavirus (2019-nCoV), which caused an epidemic of acute respiratory syndrome in humans in Wuhan, China. The epidemic, which started on 12 December 2019, had caused 2,794 laboratory-confirmed infections including 80 deaths by 26 January 2020. Full-length genome sequences were obtained from five patients at an early stage of the outbreak. The sequences are almost identical and share 79.6% sequence identity to SARS-CoV. Furthermore, we show that 2019-nCoV is 96% identical at the whole-genome level to a bat coronavirus. Pairwise protein sequence analysis of seven conserved non-structural proteins domains show that this virus belongs to the species of SARSr-CoV. In addition, 2019-nCoV virus isolated from the bronchoalveolar lavage fluid of a critically ill patient could be neutralized by sera from several patients. Notably, we confirmed that 2019-nCoV uses the same cell entry receptor-angiotensin converting enzyme II (ACE2)-as SARS-CoV.


  
The past and future of global river ice 期刊论文
NATURE, 2020, 577 (7788) : 69-+
作者:  Yang, Xiao;  Pavelsky, Tamlin M.;  Allen, George H.
收藏  |  浏览/下载:6/0  |  提交时间:2020/05/13

More than one-third of Earth'  s landmass is drained by rivers that seasonally freeze over. Ice transforms the hydrologic(1,2), ecologic(3,4), climatic(5) and socio-economic(6-8) functions of river corridors. Although river ice extent has been shown to be declining in many regions of the world(1), the seasonality, historical change and predicted future changes in river ice extent and duration have not yet been quantified globally. Previous studies of river ice, which suggested that declines in extent and duration could be attributed to warming temperatures(9,10), were based on data from sparse locations. Furthermore, existing projections of future ice extent are based solely on the location of the 0-degrees C isotherm11. Here, using satellite observations, we show that the global extent of river ice is declining, and we project a mean decrease in seasonal ice duration of 6.10 +/- 0.08 days per 1-degrees C increase in global mean surface air temperature. We tracked the extent of river ice using over 400,000 clear-sky Landsat images spanning 1984-2018 and observed a mean decline of 2.5 percentage points globally in the past three decades. To project future changes in river ice extent, we developed an observationally calibrated and validated model, based on temperature and season, which reduced the mean bias by 87 per cent compared with the 0-degree-Celsius isotherm approach. We applied this model to future climate projections for 2080-2100: compared with 2009-2029, the average river ice duration declines by 16.7 days under Representative Concentration Pathway (RCP) 8.5, whereas under RCP 4.5 it declines on average by 7.3 days. Our results show that, globally, river ice is measurably declining and will continue to decline linearly with projected increases in surface air temperature towards the end of this century.


  
Depletion of microbiome-derived molecules in the host using Clostridium genetics 期刊论文
SCIENCE, 2019, 366 (6471) : 1331-+
作者:  Guo, Chun-Jun;  Allen, Breanna M.;  Hiam, Kamir J.;  Dodd, Dylan;  Van Treuren, Will;  Higginbottom, Steven;  Nagashima, Kazuki;  Fischer, Curt R.;  Sonnenburg, Justin L.;  Spitzer, Matthew H.;  Fischbach, Michael A.
收藏  |  浏览/下载:9/0  |  提交时间:2020/02/17
Contributions of biomass-burning, urban, and biogenic emissions to the concentrations and light-absorbing properties of particulate matter in central Amazonia during the dry season 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2019, 19 (12) : 7973-8001
作者:  de Sa, Suzane S.;  Rizzo, Luciana V.;  Palm, Brett B.;  Campuzano-Jost, Pedro;  Day, Douglas A.;  Yee, Lindsay D.;  Wernis, Rebecca;  Isaacman-VanWertz, Gabriel;  Brito, Joel;  Carbone, Samara;  Liu, Yingjun J.;  Sedlacek, Arthur;  Springston, Stephen;  Goldstein, Allen H.;  Barbosa, Henrique M. J.;  Alexander, M. Lizabeth;  Artaxo, Paulo;  Jimenez, Jose L.;  Martin, Scot T.
收藏  |  浏览/下载:15/0  |  提交时间:2019/11/26
VACCINOLOGY Structural topology defines protective CD8(+) T cell epitopes in the HIV proteome 期刊论文
SCIENCE, 2019, 364 (6439) : 480-+
作者:  Gaiha, Gaurav D.;  Rossin, Elizabeth J.;  Urbach, Jonathan;  Landeros, Christian;  Collins, David R.;  Nwonu, Chioma;  Muzhingi, Itai;  Anahtar, Melis N.;  Waring, Olivia M.;  Piechocka-Trocha, Alicja;  Waring, Michael;  Worrall, Daniel P.;  Ghebremichael, Musie S.;  Newman, Ruchi M.;  Power, Karen A.;  Allen, Todd M.;  Chodosh, James;  Walker, Bruce D.
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27