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Predicting Solute Transport through Green Stormwater Infrastructure with Unsteady Transit Time Distribution Theory 期刊论文
Water Resources Research, 2020
作者:  E. A. Parker;  S. B. Grant;  Y. Cao;  M. A. Rippy;  K. J. McGuire;  P. A. Holden;  M. Feraud;  S. Avasarala;  H. Liu;  W. C. Hung;  M. Rugh;  J. Jay;  J. Peng;  S. Shao;  D. Li
收藏  |  浏览/下载:12/0  |  提交时间:2020/12/28
An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike 期刊论文
Science, 2020
作者:  Michael Schoof;  Bryan Faust;  Reuben A. Saunders;  Smriti Sangwan;  Veronica Rezelj;  Nick Hoppe;  Morgane Boone;  Christian B. Billesbølle;  Cristina Puchades;  Caleigh M. Azumaya;  Huong T. Kratochvil;  Marcell Zimanyi;  Ishan Deshpande;  Jiahao Liang;  Sasha Dickinson;  Henry C. Nguyen;  Cynthia M. Chio;  Gregory E. Merz;  Michael C. Thompson;  Devan Diwanji;  Kaitlin Schaefer;  Aditya A. Anand;  Niv Dobzinski;  Beth Shoshana Zha;  Camille R. Simoneau;  Kristoffer Leon;  Kris M. White;  Un Seng Chio;  Meghna Gupta;  Mingliang Jin;  Fei Li;  Yanxin Liu;  Kaihua Zhang;  David Bulkley;  Ming Sun;  Amber M. Smith;  Alexandrea N. Rizo;  Frank Moss;  Axel F. Brilot;  Sergei Pourmal;  Raphael Trenker;  Thomas Pospiech;  Sayan Gupta;  Benjamin Barsi-Rhyne;  Vladislav Belyy;  Andrew W. Barile-Hill;  Silke Nock;  Yuwei Liu;  Nevan J. Krogan;  Corie Y. Ralston;  Danielle L. Swaney;  Adolfo García-Sastre;  Melanie Ott;  Marco Vignuzzi;  QCRG Structural Biology Consortium4‡;  Peter Walter;  Aashish Manglik
收藏  |  浏览/下载:15/0  |  提交时间:2020/12/22
Inverse estimation of spatiotemporal flux boundary conditions in unsaturated water flow modeling 期刊论文
Water Resources Research, 2020
作者:  N. Li;  X. Y. Yue;  W. K. Wang;  Z. T. Ma
收藏  |  浏览/下载:17/0  |  提交时间:2020/12/22
Variations in color and reflectance on the surface of asteroid (101955) Bennu 期刊论文
Science, 2020
作者:  D. N. DellaGiustina;  K. N. Burke;  K. J. Walsh;  P. H. Smith;  D. R. Golish;  E. B. Bierhaus;  R.-L. Ballouz;  T. L. Becker;  H. Campins;  E. Tatsumi;  K. Yumoto;  S. Sugita;  J. D. Prasanna Deshapriya;  E. A. Cloutis;  B. E. Clark;  A. R. Hendrix;  A. Sen;  M. M. Al Asad;  M. G. Daly;  D. M. Applin;  C. Avdellidou;  M. A. Barucci;  K. J. Becker;  C. A. Bennett;  W. F. Bottke;  J. I. Brodbeck;  H. C. Connolly;  M. Delbo;  J. de Leon;  C. Y. Drouet d’Aubigny;  K. L. Edmundson;  S. Fornasier;  V. E. Hamilton;  P. H. Hasselmann;  C. W. Hergenrother;  E. S. Howell;  E. R. Jawin;  H. H. Kaplan;  L. Le Corre;  L. F. Lim;  J. Y. Li;  P. Michel;  J. L. Molaro;  M. C. Nolan;  J. Nolau;  M. Pajola;  A. Parkinson;  M. Popescu;  N. A. Porter;  B. Rizk;  J. L. Rizos;  A. J. Ryan;  B. Rozitis;  N. K. Shultz;  A. A. Simon;  D. Trang;  R. B. Van Auken;  C. W. V. Wolner;  D. S. Lauretta
收藏  |  浏览/下载:11/0  |  提交时间:2020/11/09
SoilTemp: A global database of near‐surface temperature 期刊论文
Global Change Biology, 2020
作者:  Jonas J. Lembrechts;  Juha Aalto;  Michael B. Ashcroft;  Pieter De Frenne;  Martin Kopecký;  Jonathan Lenoir;  Miska Luoto;  Ilya M. D. Maclean;  Olivier Roupsard;  Eduardo Fuentes‐;  Lillo;  Rafael A. Garcí;  a;  Loï;  c Pellissier;  Camille Pitteloud;  Juha M. Alatalo;  Stuart W. Smith;  Robert G. Bjö;  rk;  Lena Muffler;  Amanda Ratier Backes;  Simone Cesarz;  Felix Gottschall;  Joseph Okello;  Josef Urban;  Roman Plichta;  Martin Svá;  tek;  Shyam S. Phartyal;  Sonja Wipf;  Nico Eisenhauer;  Mihai Puș;  caș;  Pavel D. Turtureanu;  Andrej Varlagin;  Romina D. Dimarco;  Alistair S. Jump;  Krystal Randall;  Ellen Dorrepaal;  Keith Larson;  Josefine Walz;  Luca Vitale;  Miroslav Svoboda;  Rebecca Finger Higgens;  Aud H. Halbritter;  Salvatore R. Curasi;  Ian Klupar;  Austin Koontz;  William D. Pearse;  Elizabeth Simpson;  Michael Stemkovski;  Bente Jessen Graae;  Mia Vedel Sø;  rensen;  Toke T. Hø;  ye;  M. Rosa Ferná;  ndez Calzado;  Juan Lorite;  Michele Carbognani;  Marcello Tomaselli;  T'ai G. W. Forte;  Alessandro Petraglia;  Stef Haesen;  Ben Somers;  Koenraad Van Meerbeek;  Mats P. Bjö;  rkman;  Kristoffer Hylander;  Sonia Merinero;  Mana Gharun;  Nina Buchmann;  Jiri Dolezal;  Radim Matula;  Andrew D. Thomas;  Joseph J. Bailey;  Dany Ghosn;  George Kazakis;  Miguel A. de Pablo;  Julia Kemppinen;  Pekka Niittynen;  Lisa Rew;  Tim Seipel;  Christian Larson;  James D. M. Speed;  Jonas Ardö;  Nicoletta Cannone;  Mauro Guglielmin;  Francesco Malfasi;  Maaike Y. Bader;  Rafaella Canessa;  Angela Stanisci;  Juergen Kreyling;  Jonas Schmeddes;  Laurenz Teuber;  Valeria Aschero;  Marek Č;  iliak;  Františ;  ek Má;  liš;  Pallieter De Smedt;  Sanne Govaert;  Camille Meeussen;  Pieter Vangansbeke;  Khatuna Gigauri;  Andrea Lamprecht;  Harald Pauli;  Klaus Steinbauer;  Manuela Winkler;  Masahito Ueyama;  Martin A. Nuñ;  ez;  Tudor‐;  Mihai Ursu;  Sylvia Haider;  Ronja E. M. Wedegä;  rtner;  Marko Smiljanic;  Mario Trouillier;  Martin Wilmking;  Jan Altman;  Josef Brů;  na;  Lucia Hederová;  Martin Macek;  Matě;  j Man;  Jan Wild;  Pascal Vittoz;  Meelis Pä;  rtel;  Peter Baranč;  ok;  ;  bert Kanka;  Jozef Kollá;  r;  Andrej Palaj;  Agustina Barros;  Ana C. Mazzolari;  Marijn Bauters;  Pascal Boeckx;  José;  ;  Luis Benito Alonso;  Shengwei Zong;  Valter Di Cecco;  Zuzana Sitková;  Katja Tielbö;  rger;  Liesbeth van den Brink;  Robert Weigel;  ;  rgen Homeier;  C. Johan Dahlberg;  Sergiy Medinets;  Volodymyr Medinets;  Hans J. De Boeck;  Miguel Portillo‐;  Estrada;  Lore T. Verryckt;  Ann Milbau;  Gergana N. Daskalova;  Haydn J. D. Thomas;  Isla H. Myers‐;  Smith;  Benjamin Blonder;  ;  rg G. Stephan;  Patrice Descombes;  Florian Zellweger;  Esther R. Frei;  Bernard Heinesch;  Christopher Andrews;  Jan Dick;  Lukas Siebicke;  Adrian Rocha;  Rebecca A. Senior;  Christian Rixen;  Juan J. Jimenez;  Julia Boike;  Aní;  bal Pauchard;  Thomas Scholten;  Brett Scheffers;  David Klinges;  Edmund W. Basham;  Jian Zhang;  Zhaochen Zhang;  Charly Gé;  ron;  Fatih Fazlioglu;  Onur Candan;  Jhonatan Sallo Bravo;  Filip Hrbacek;  Kamil Laska;  Edoardo Cremonese;  Peter Haase;  Fernando E. Moyano;  Christian Rossi;  Ivan Nijs
收藏  |  浏览/下载:51/0  |  提交时间:2020/06/29
DNA-repair enzyme turns to translation 期刊论文
NATURE, 2020, 579 (7798) : 198-199
作者:  Bian, Zhilei;  Gong, Yandong;  Huang, Tao;  Lee, Christopher Z. W.;  Bian, Lihong;  Bai, Zhijie;  Shi, Hui;  Zeng, Yang;  Liu, Chen;  He, Jian;  Zhou, Jie;  Li, Xianlong;  Li, Zongcheng;  Ni, Yanli;  Ma, Chunyu;  Cui, Lei;  Zhang, Rui;  Chan, Jerry K. Y.;  Ng, Lai Guan;  Lan, Yu;  Ginhoux, Florent;  Liu, Bing
收藏  |  浏览/下载:13/0  |  提交时间:2020/07/03

A key DNA-repair enzyme has a surprising role during the early steps in the assembly of ribosomes - the molecular machines that translate the genetic code into protein.


  
The water lily genome and the early evolution of flowering plants 期刊论文
NATURE, 2020, 577 (7788) : 79-+
作者:  Zhang, Liangsheng;  Chen, Fei;  Zhang, Xingtan;  Li, Zhen;  Zhao, Yiyong;  Lohaus, Rolf;  Chang, Xiaojun;  Dong, Wei;  Ho, Simon Y. W.;  Liu, Xing;  Song, Aixia;  Chen, Junhao;  Guo, Wenlei;  Wang, Zhengjia;  Zhuang, Yingyu;  Wang, Haifeng;  Chen, Xuequn;  Hu, Juan;  Liu, Yanhui;  Qin, Yuan;  Wang, Kai;  Dong, Shanshan;  Liu, Yang;  Zhang, Shouzhou;  Yu, Xianxian;  Wu, Qian;  Wang, Liangsheng;  Yan, Xueqing;  Jiao, Yuannian;  Kong, Hongzhi;  Zhou, Xiaofan;  Yu, Cuiwei;  Chen, Yuchu;  Li, Fan;  Wang, Jihua;  Chen, Wei;  Chen, Xinlu;  Jia, Qidong;  Zhang, Chi;  Jiang, Yifan;  Zhang, Wanbo;  Liu, Guanhua;  Fu, Jianyu;  Chen, Feng;  Ma, Hong;  Van de Peer, Yves;  Tang, Haibao
收藏  |  浏览/下载:11/0  |  提交时间:2020/07/03

Water lilies belong to the angiosperm order Nymphaeales. Amborellales, Nymphaeales and Austrobaileyales together form the so-called ANA-grade of angiosperms, which are extant representatives of lineages that diverged the earliest from the lineage leading to the extant mesangiosperms(1-3). Here we report the 409-megabase genome sequence of the blue-petal water lily (Nymphaea colorata). Our phylogenomic analyses support Amborellales and Nymphaeales as successive sister lineages to all other extant angiosperms. The N. colorata genome and 19 other water lily transcriptomes reveal a Nymphaealean whole-genome duplication event, which is shared by Nymphaeaceae and possibly Cabombaceae. Among the genes retained from this whole-genome duplication are homologues of genes that regulate flowering transition and flower development. The broad expression of homologues of floral ABCE genes in N. colorata might support a similarly broadly active ancestral ABCE model of floral organ determination in early angiosperms. Water lilies have evolved attractive floral scents and colours, which are features shared with mesangiosperms, and we identified their putative biosynthetic genes in N. colorata. The chemical compounds and biosynthetic genes behind floral scents suggest that they have evolved in parallel to those in mesangiosperms. Because of its unique phylogenetic position, the N. colorata genome sheds light on the early evolution of angiosperms.


  
Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis 期刊论文
NATURE, 2020, 578 (7796) : 577-+
作者:  Bogomilov, M.;  Tsenov, R.;  Vankova-Kirilova, G.;  Song, Y. P.;  Tang, J. Y.;  Li, Z. H.;  Bertoni, R.;  Bonesini, M.;  Chignoli, F.;  Mazza, R.;  Palladino, V;  de Bari, A.;  Orestano, D.;  Tortora, L.;  Kuno, Y.;  Sakamoto, H.;  Sato, A.;  Ishimoto, S.;  Chung, M.;  Sung, C. K.;  Filthaut, F.;  Jokovic, D.;  Maletic, D.;  Savic, M.;  Jovancevic, N.;  Nikolov, J.;  Vretenar, M.;  Ramberger, S.;  Asfandiyarov, R.;  Blondel, A.;  Drielsma, F.;  Karadzhov, Y.;  Boyd, S.;  Greis, J. R.;  Lord, T.;  Pidcott, C.;  Taylor, I;  Charnley, G.;  Collomb, N.;  Dumbell, K.;  Gallagher, A.;  Grant, A.;  Griffiths, S.;  Hartnett, T.;  Martlew, B.;  Moss, A.;  Muir, A.;  Mullacrane, I;  Oates, A.;  Owens, P.;  Stokes, G.;  Warburton, P.;  White, C.;  Adams, D.;  Bayliss, V;  Boehm, J.;  Bradshaw, T. W.;  Brown, C.;  Courthold, M.;  Govans, J.;  Hills, M.;  Lagrange, J-B;  Macwaters, C.;  Nichols, A.;  Preece, R.;  Ricciardi, S.;  Rogers, C.;  Stanley, T.;  Tarrant, J.;  Tucker, M.;  Watson, S.;  Wilson, A.;  Bayes, R.;  Nugent, J. C.;  Soler, F. J. P.;  Chatzitheodoridis, G. T.;  Dick, A. J.;  Ronald, K.;  Whyte, C. G.;  Young, A. R.;  Gamet, R.;  Cooke, P.;  Blackmore, V. J.;  Colling, D.;  Dobbs, A.;  Dornan, P.;  Franchini, P.;  Hunt, C.;  Jurj, P. B.;  Kurup, A.;  Long, K.;  Martyniak, J.;  Middleton, S.;  Pasternak, J.;  Uchida, M. A.;  Cobb, J. H.;  Booth, C. N.;  Hodgson, P.;  Langlands, J.;  Overton, E.;  Pec, V;  Smith, P. J.;  Wilbur, S.;  Ellis, M.;  Gardener, R. B. S.;  Kyberd, P.;  Nebrensky, J. J.;  DeMello, A.;  Gourlay, S.;  Lambert, A.;  Li, D.;  Luo, T.;  Prestemon, S.;  Virostek, S.;  Palmer, M.;  Witte, H.;  Adey, D.;  Bross, A. D.;  Bowring, D.;  Liu, A.;  Neuffer, D.;  Popovic, M.;  Rubinov, P.;  Freemire, B.;  Hanlet, P.;  Kaplan, D. M.;  Mohayai, T. A.;  Rajaram, D.;  Snopok, P.;  Torun, Y.;  Cremaldi, L. M.;  Sanders, D. A.;  Summers, D. J.;  Coney, L. R.;  Hanson, G. G.;  Heidt, C.
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

Hydrogen peroxide (H2O2) is a major reactive oxygen species in unicellular and multicellular organisms, and is produced extracellularly in response to external stresses and internal cues(1-4). H2O2 enters cells through aquaporin membrane proteins and covalently modifies cytoplasmic proteins to regulate signalling and cellular processes. However, whether sensors for H2O2 also exist on the cell surface remains unknown. In plant cells, H2O2 triggers an influx of Ca2+ ions, which is thought to be involved in H2O2 sensing and signalling. Here, by using forward genetic screens based on Ca2+ imaging, we isolated hydrogen-peroxide-induced Ca(2+)increases (hpca) mutants in Arabidopsis, and identified HPCA1 as a leucine-rich-repeat receptor kinase belonging to a previously uncharacterized subfamily that features two extra pairs of cysteine residues in the extracellular domain. HPCA1 is localized to the plasma membrane and is activated by H2O2 via covalent modification of extracellular cysteine residues, which leads to autophosphorylation of HPCA1. HPCA1 mediates H2O2-induced activation of Ca2+ channels in guard cells and is required for stomatal closure. Our findings help to identify how the perception of extracellular H2O2 is integrated with responses to various external stresses and internal cues in plants, and have implications for the design of crops with enhanced fitness.


HPCA1, a member of a previously uncharacterized subfamily of leucine-rich-repeat receptor-like kinases, is the hydrogen-peroxide sensor at the plasma membrane in Arabidopsis.


  
Electron Bernstein waves driven by electron crescents near the electron diffusion region 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Li, W. Y.;  Graham, D. B.;  Khotyaintsev, Yu. V.;  Vaivads, A.;  Andre, M.;  Min, K.;  Liu, K.;  Tang, B. B.;  Wang, C.;  Fujimoto, K.;  Norgren, C.;  Toledo-Redondo, S.;  Lindqvist, P. -A.;  Ergun, R. E.;  Torbert, R. B.;  Rager, A. C.;  Dorelli, J. C.;  Gershman, D. J.;  Giles, B. L.;  Lavraud, B.;  Plaschke, F.;  Magnes, W.;  Le Contel, O.;  Russell, C. T.;  Burch, J. L.
收藏  |  浏览/下载:19/0  |  提交时间:2020/05/13
B cells and tertiary lymphoid structures promote immunotherapy response 期刊论文
NATURE, 2020, 577 (7791) : 549-+
作者:  Zhang, Liangsheng;  Chen, Fei;  Zhang, Xingtan;  Li, Zhen;  Zhao, Yiyong;  Lohaus, Rolf;  Chang, Xiaojun;  Dong, Wei;  Ho, Simon Y. W.;  Liu, Xing;  Song, Aixia;  Chen, Junhao;  Guo, Wenlei;  Wang, Zhengjia;  Zhuang, Yingyu;  Wang, Haifeng;  Chen, Xuequn;  Hu, Juan;  Liu, Yanhui;  Qin, Yuan;  Wang, Kai;  Dong, Shanshan;  Liu, Yang;  Zhang, Shouzhou;  Yu, Xianxian;  Wu, Qian;  Wang, Liangsheng;  Yan, Xueqing;  Jiao, Yuannian;  Kong, Hongzhi;  Zhou, Xiaofan;  Yu, Cuiwei;  Chen, Yuchu;  Li, Fan;  Wang, Jihua;  Chen, Wei;  Chen, Xinlu;  Jia, Qidong;  Zhang, Chi;  Jiang, Yifan;  Zhang, Wanbo;  Liu, Guanhua;  Fu, Jianyu;  Chen, Feng;  Ma, Hong;  Van de Peer, Yves;  Tang, Haibao
收藏  |  浏览/下载:41/0  |  提交时间:2020/07/03

Multiomic profiling of several cohorts of patients treated with immune checkpoint blockade highlights the presence and potential role of B cells and tertiary lymphoid structures in promoting therapy response.


Treatment with immune checkpoint blockade (ICB) has revolutionized cancer therapy. Until now, predictive biomarkers(1-10) and strategies to augment clinical response have largely focused on the T cell compartment. However, other immune subsets may also contribute to anti-tumour immunity(11-15), although these have been less well-studied in ICB treatment(16). A previously conducted neoadjuvant ICB trial in patients with melanoma showed via targeted expression profiling(17) that B cell signatures were enriched in the tumours of patients who respond to treatment versus non-responding patients. To build on this, here we performed bulk RNA sequencing and found that B cell markers were the most differentially expressed genes in the tumours of responders versus non-responders. Our findings were corroborated using a computational method (MCP-counter(18)) to estimate the immune and stromal composition in this and two other ICB-treated cohorts (patients with melanoma and renal cell carcinoma). Histological evaluation highlighted the localization of B cells within tertiary lymphoid structures. We assessed the potential functional contributions of B cells via bulk and single-cell RNA sequencing, which demonstrate clonal expansion and unique functional states of B cells in responders. Mass cytometry showed that switched memory B cells were enriched in the tumours of responders. Together, these data provide insights into the potential role of B cells and tertiary lymphoid structures in the response to ICB treatment, with implications for the development of biomarkers and therapeutic targets.