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Enzyme formation by immune receptors 期刊论文
Science, 2020
作者:  Lei Tian;  Xin Li
收藏  |  浏览/下载:8/0  |  提交时间:2020/12/07
Reconstituting tissue patterning 期刊论文
Science, 2020
作者:  Naama Barkai;  Ben-Zion Shilo
收藏  |  浏览/下载:6/0  |  提交时间:2020/10/20
Structural basis of DNA targeting by a transposon-encoded CRISPR-Cas system 期刊论文
NATURE, 2020, 577 (7789) : 271-+
作者:  Halpin-Healy, Tyler S.;  Klompe, Sanne E.;  Sternberg, Samuel H.;  Fernandez, Israel S.
收藏  |  浏览/下载:5/0  |  提交时间:2020/07/03

Bacteria use adaptive immune systems encoded by CRISPR and Cas genes to maintain genomic integrity when challenged by pathogens and mobile genetic elements(1-3). Type I CRISPR-Cas systems typically target foreign DNA for degradation via joint action of the ribonucleoprotein complex Cascade and the helicase-nuclease Cas3(4,5), but nuclease-deficient type I systems lacking Cas3 have been repurposed for RNA-guided transposition by bacterial Tn7-like transposons(6,7). How CRISPR- and transposon-associated machineries collaborate during DNA targeting and insertion remains unknown. Here we describe structures of a TniQ-Cascade complex encoded by the Vibrio cholerae Tn6677 transposon using cryo-electron microscopy, revealing the mechanistic basis of this functional coupling. The cryo-electron microscopy maps enabled de novo modelling and refinement of the transposition protein TniQ, which binds to the Cascade complex as a dimer in a head-to-tail configuration, at the interface formed by Cas6 and Cas7 near the 3'  end of the CRISPR RNA (crRNA). The natural Cas8-Cas5 fusion protein binds the 5'  crRNA handle and contacts the TniQ dimer via a flexible insertion domain. A target DNA-bound structure reveals critical interactions necessary for protospacer-adjacent motif recognition and R-loop formation. This work lays the foundation for a structural understanding of how DNA targeting by TniQ-Cascade leads to downstream recruitment of additional transposase proteins, and will guide protein engineering efforts to leverage this system for programmable DNA insertions in genome-engineering applications.


  
A conserved dimer interface connects ERH and YTH family proteins to promote gene silencing 期刊论文
NATURE COMMUNICATIONS, 2019, 10
作者:  Xie, Guodong;  Vo, Tommy V.;  Thillainadesan, Gobi;  Holla, Sahana;  Zhang, Beibei;  Jiang, Yiyang;  Lv, Mengqi;  Xu, Zheng;  Wang, Chongyuan;  Balachandran, Vanivilasini;  Shi, Yunyu;  Li, Fudong;  Grewal, Shiv I. S.
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Quantitative constraints on autoxidation and dimer formation from direct probing of monoterpene-derived peroxy radical chemistry 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (48) : 12142-12147
作者:  Zhao, Yue;  Thornton, Joel A.;  Pye, Havala O. T.
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
monoterpenes  peroxy radicals  autoxidation  dimers  particle formation  
Two-step self-assembly of a spider silk molecular clamp 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Rat, Charlotte;  Heiby, Julia C.;  Bunz, Jessica P.;  Neuweiler, Hannes
收藏  |  浏览/下载:0/0  |  提交时间:2019/11/27
Synergistic O-3 + OH oxidation pathway to extremely low-volatility dimers revealed in beta-pinene secondary organic aerosol 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (33) : 8301-8306
作者:  Kenseth, Christopher M.;  Huang, Yuanlong;  Zhao, Ran;  Dalleska, Nathan F.;  Hethcox, Caleb;  Stoltz, Brian M.;  Seinfeld, John H.
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
secondary organic aerosol  synergistic oxidation  atmospheric accretion chemistry  dimer formation  monoterpenes  
Molecular basis of dimer formation during the biosynthesis of benzofluorene-containing atypical angucyclines 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Huang, Chunshuai;  Yang, Chunfang;  Zhang, Wenjun;  Zhang, Liping;  De, Bidhan Chandra;  Zhu, Yiguang;  Jiang, Xiaodong;  Fang, Chunyan;  Zhang, Qingbo;  Yuan, Cheng-Shan;  Liu, Hung-wen;  Zhang, Changsheng
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
Phosphorylated HBO1 at UV irradiated sites is essential for nucleotide excision repair 期刊论文
NATURE COMMUNICATIONS, 2017, 8
作者:  Niida, Hiroyuki;  Matsunuma, Ryoichi;  Horiguchi, Ryo;  Uchida, Chiharu;  Nakazawa, Yuka;  Motegi, Akira;  Nishimoto, Koji;  Sakai, Satoshi;  Ohhata, Tatsuya;  Kitagawa, Kyoko;  Moriwaki, Shinichi;  Nishitani, Hideo;  Ui, Ayako;  Ogi, Tomoo;  Kitagawa, Masatoshi
收藏  |  浏览/下载:4/0  |  提交时间:2019/11/27