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Migratory behavior and winter geography drive differential range shifts of eastern birds in response to recent climate change 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (23) : 12897-12903
作者:  Rushing, Clark S.;  Royle, J. Andrew;  Ziolkowski, David J., Jr.;  Pardieck, Keith L.
收藏  |  浏览/下载:11/0  |  提交时间:2020/06/01
Breeding Bird Survey  species distribution modeling  occupancy modeling  range shifts  migration  
Upscaling Water Flow in Composite Nanoporous Shale Matrix Using Lattice Boltzmann Method 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (4)
作者:  Zhang, Tao;  Javadpour, Farzam;  Yin, Ying;  Li, Xiangfang
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/02
shale  flow  nanopores  liquid slip  digital rocks  lattice Boltzmann method  
Intraseasonal Drainage Network Dynamics in a Headwater Catchment of the Italian Alps 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (4)
作者:  Durighetto, N.;  Vingiani, F.;  Bertassello, L. E.;  Camporese, M.;  Botter, G.
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/02
stream network  headwater basin  catchment hydrology  stream length  temporary streams  
Action of a minimal contractile bactericidal nanomachine 期刊论文
NATURE, 2020, 580 (7805) : 658-+
作者:  Peng, Ruchao;  Xu, Xin;  Jing, Jiamei;  Wang, Min;  Peng, Qi;  Liu, Sheng;  Wu, Ying;  Bao, Xichen;  Wang, Peiyi;  Qi, Jianxun;  Gao, George F.;  Shi, Yi
收藏  |  浏览/下载:13/0  |  提交时间:2020/07/03

The authors report near-atomic resolution structures of the R-type bacteriocin from Pseudomonas aeruginosa in the pre-contraction and post-contraction states, and these structures provide insight into the mechanism of action of molecular syringes.


R-type bacteriocins are minimal contractile nanomachines that hold promise as precision antibiotics(1-4). Each bactericidal complex uses a collar to bridge a hollow tube with a contractile sheath loaded in a metastable state by a baseplate scaffold(1,2). Fine-tuning of such nucleic acid-free protein machines for precision medicine calls for an atomic description of the entire complex and contraction mechanism, which is not available from baseplate structures of the (DNA-containing) T4 bacteriophage(5). Here we report the atomic model of the complete R2 pyocin in its pre-contraction and post-contraction states, each containing 384 subunits of 11 unique atomic models of 10 gene products. Comparison of these structures suggests the following sequence of events during pyocin contraction: tail fibres trigger lateral dissociation of baseplate triplexes  the dissociation then initiates a cascade of events leading to sheath contraction  and this contraction converts chemical energy into mechanical force to drive the iron-tipped tube across the bacterial cell surface, killing the bacterium.


  
Ecological economics for humanity's plague phase 期刊论文
ECOLOGICAL ECONOMICS, 2020, 169
作者:  Rees, William E.
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/02
Overshoot  Competitive displacement  Far-from-equilibrium  Maximum power  Plague phase  Denial  Contraction  One earth  
TLR9 and beclin 1 crosstalk regulates muscle AMPK activation in exercise 期刊论文
NATURE, 2020
作者:  Keener, Megan;  Hunt, Camden;  Carroll, Timothy G.;  Kampel, Vladimir;  Dobrovetsky, Roman;  Hayton, Trevor W.;  Menard, Gabriel
收藏  |  浏览/下载:18/0  |  提交时间:2020/07/03

In mice, the interaction of the innate immune sensor TLR9 with beclin 1 is shown to have a role in glucose metabolism and AMPK activation in skeletal muscle during exercise.


The activation of adenosine monophosphate-activated protein kinase (AMPK) in skeletal muscle coordinates systemic metabolic responses to exercise(1). Autophagy-a lysosomal degradation pathway that maintains cellular homeostasis(2)-is upregulated during exercise, and a core autophagy protein, beclin 1, is required for AMPK activation in skeletal muscle(3). Here we describe a role for the innate immune-sensing molecule Toll-like receptor 9 (TLR9)(4), and its interaction with beclin 1, in exercise-induced activation of AMPK in skeletal muscle. Mice that lack TLR9 are deficient in both exercise-induced activation of AMPK and plasma membrane localization of the GLUT4 glucose transporter in skeletal muscle, but are not deficient in autophagy. TLR9 binds beclin 1, and this interaction is increased by energy stress (glucose starvation and endurance exercise) and decreased by a BCL2 mutation(3,5) that blocks the disruption of BCL2-beclin 1 binding. TLR9 regulates the assembly of the endolysosomal phosphatidylinositol 3-kinase complex (PI3KC3-C2)-which contains beclin 1 and UVRAG-in skeletal muscle during exercise, and knockout of beclin 1 or UVRAG inhibits the cellular AMPK activation induced by glucose starvation. Moreover, TLR9 functions in a muscle-autonomous fashion in ex vivo contraction-induced AMPK activation, glucose uptake and beclin 1-UVRAG complex assembly. These findings reveal a heretofore undescribed role for a Toll-like receptor in skeletal-muscle AMPK activation and glucose metabolism during exercise, as well as unexpected crosstalk between this innate immune sensor and autophagy proteins.


  
Hiding from the climate: Characterizing microrefugia for boreal forest understory species 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Greiser, Caroline;  Ehrlen, Johan;  Meineri, Eric;  Hylander, Kristoffer
收藏  |  浏览/下载:11/0  |  提交时间:2020/02/17
cold-adapted species  marginal populations  microclimate  range contraction  range edge  range shift  rear edge  thermal niche  
Genes on the edge: A framework to detect genetic diversity imperiled by climate change 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (12) : 4034-4047
作者:  Carvalho, Silvia Benoliel;  Torres, Joao;  Tarroso, Pedro;  Velo-Anton, Guillermo
收藏  |  浏览/下载:5/0  |  提交时间:2020/02/17
leading edge  nucleotide diversity  phylin  range dynamics  species distribution models  trailing edge  
The global decline of freshwater megafauna 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (11) : 3883-3892
作者:  He, Fengzhi;  Zarfl, Christiane;  Bremerich, Vanessa;  David, Jonathan N. W.;  Hogan, Zeb;  Kalinkat, Gregor;  Tockner, Klement;  Jaehnig, Sonja C.
收藏  |  浏览/下载:13/0  |  提交时间:2019/11/27
biodiversity  conservation  distribution  extinction  population  range contraction  size  vertebrate  
Enhanced equatorial warming causes deep-tropical contraction and subtropical monsoon shift 期刊论文
NATURE CLIMATE CHANGE, 2019, 9 (11) : 834-+
作者:  Zhou, Wenyu;  Xie, Shang-Ping;  Yang, Da
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27