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Population sequencing data reveal a compendium of mutational processes in the human germ line 期刊论文
Science, 2021
作者:  Vladimir B. Seplyarskiy;  Ruslan A. Soldatov;  Evan Koch;  Ryan J. McGinty;  Jakob M. Goldmann;  Ryan D. Hernandez;  Kathleen Barnes;  Adolfo Correa;  Esteban G. Burchard;  Patrick T. Ellinor;  Stephen T. McGarvey;  Braxton D. Mitchell;  Ramachandran S. Vasan;  Susan Redline;  Edwin Silverman;  Scott T. Weiss;  Donna K. Arnett;  John Blangero;  Eric Boerwinkle;  Jiang He;  Courtney Montgomery;  D. C. Rao;  Jerome I. Rotter;  Kent D. Taylor;  Jennifer A. Brody;  Yii-Der Ida Chen;  Lisa de las Fuentes;  Chii-Min Hwu;  Stephen S. Rich;  Ani W. Manichaikul;  Josyf C. Mychaleckyj;  Nicholette D. Palmer;  Jennifer A. Smith;  Sharon L. R. Kardia;  Patricia A. Peyser;  Lawrence F. Bielak;  Timothy D. O’Connor;  Leslie S. Emery;  NHLBI Trans-Omics for Precision Medicine Consortium‡;  TOPMed Population Genetics Working Group;  Christian Gilissen;  Wendy S. W. Wong;  Peter V. Kharchenko;  Shamil Sunyaev
收藏  |  浏览/下载:13/0  |  提交时间:2021/08/30
Rapid speciation via the evolution of pre-mating isolation in the Iberá Seedeater 期刊论文
Science, 2021
作者:  Sheela P. Turbek;  Melanie Browne;  Adrián S. Di Giacomo;  Cecilia Kopuchian;  Wesley M. Hochachka;  Cecilia Estalles;  Darío A. Lijtmaer;  Pablo L. Tubaro;  Luís Fábio Silveira;  Irby J. Lovette;  Rebecca J. Safran;  Scott A. Taylor;  Leonardo Campagna
收藏  |  浏览/下载:9/0  |  提交时间:2021/04/06
Fisheries rely on threatened salt marshes 期刊论文
Science, 2020
作者:  Ronald Baker;  Matthew D. Taylor;  Kenneth W. Able;  Michael W. Beck;  Just Cebrian;  Denise D. Colombano;  Rod M. Connolly;  Carolyn Currin;  Linda A. Deegan;  Ilka C. Feller;  Ben L. Gilby;  Matthew E. Kimball;  Thomas J. Minello;  Lawrence P. Rozas;  Charles Simenstad;  R. Eugene Turner;  Nathan J. Waltham;  Michael P. Weinstein;  Shelby L. Ziegler;  Philine S.E. zu Ermgassen;  Caitlin Alcott;  Scott B. Alford;  Myriam A. Barbeau;  Sarah C. Crosby;  Kate Dodds;  Alyssa Frank;  Janelle Goeke;  Lucy A. Goodridge Gaines;  Felicity E. Hardcastle;  Christopher J. Henderson;  W. Ryan James;  Matthew D. Kenworthy;  Justin Lesser;  Debbrota Mallick;  Charles W. Martin;  Ashley E. McDonald;  Catherine McLuckie;  Blair H. Morrison;  James A. Nelson;  Gregory S. Norris;  Jeff Ollerhead;  James W. Pahl;  Sarah Ramsden;  Jennifer S. Rehage;  James F. Reinhardt;  Ryan J. Rezek;  L. Mark Risse;  Joseph A.M. Smith;  Eric L. Sparks;  Lorie W. Staver
收藏  |  浏览/下载:14/0  |  提交时间:2020/11/09
Dietary fructose feeds hepatic lipogenesis via microbiota-derived acetate 期刊论文
NATURE, 2020, 579 (7800) : 586-+
作者:  Ng, Andrew H.;  Nguyen, Taylor H.;  Gomez-Schiavon, Mariana;  Dods, Galen;  Langan, Robert A.;  Boyken, Scott E.;  Samson, Jennifer A.;  Waldburger, Lucas M.;  Dueber, John E.;  Baker, David;  El-Samad, Hana
收藏  |  浏览/下载:29/0  |  提交时间:2020/07/03

A genetic mouse model is used to reveal a two-pronged mechanism of fructose-induced de novo lipogenesis in the liver, in which fructose catabolism in hepatocytes provides a signal to promote lipogenesis, whereas fructose metabolism by the gut microbiota provides acetate as a substrate to feed lipogenesis.


Consumption of fructose has risen markedly in recent decades owing to the use of sucrose and high-fructose corn syrup in beverages and processed foods(1), and this has contributed to increasing rates of obesity and non-alcoholic fatty liver disease(2-4). Fructose intake triggers de novo lipogenesis in the liver(4-6), in which carbon precursors of acetyl-CoA are converted into fatty acids. The ATP citrate lyase (ACLY) enzyme cleaves cytosolic citrate to generate acetyl-CoA, and is upregulated after consumption of carbohydrates(7). Clinical trials are currently pursuing the inhibition of ACLY as a treatment for metabolic diseases(8). However, the route from dietary fructose to hepatic acetyl-CoA and lipids remains unknown. Here, using in vivo isotope tracing, we show that liver-specific deletion of Acly in mice is unable to suppress fructose-induced lipogenesis. Dietary fructose is converted to acetate by the gut microbiota(9), and this supplies lipogenic acetyl-CoA independently of ACLY(10). Depletion of the microbiota or silencing of hepatic ACSS2, which generates acetyl-CoA from acetate, potently suppresses the conversion of bolus fructose into hepatic acetyl-CoA and fatty acids. When fructose is consumed more gradually to facilitate its absorption in the small intestine, both citrate cleavage in hepatocytes and microorganism-derived acetate contribute to lipogenesis. By contrast, the lipogenic transcriptional program is activated in response to fructose in a manner that is independent of acetyl-CoA metabolism. These data reveal a two-pronged mechanism that regulates hepatic lipogenesis, in which fructolysis within hepatocytes provides a signal to promote the expression of lipogenic genes, and the generation of microbial acetate feeds lipogenic pools of acetyl-CoA.


  
Elpistostege and the origin of the vertebrate hand 期刊论文
NATURE, 2020, 579 (7800) : 549-+
作者:  Ng, Andrew H.;  Nguyen, Taylor H.;  Gomez-Schiavon, Mariana;  Dods, Galen;  Langan, Robert A.;  Boyken, Scott E.;  Samson, Jennifer A.;  Waldburger, Lucas M.;  Dueber, John E.;  Baker, David;  El-Samad, Hana
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

The pectoral fin of an Elpistostege watsoni specimen from the Upper Devonian period of Canada combines digits and fin rays, blurring the line between the appendages of fish and land vertebrates.


The evolution of fishes to tetrapods (four-limbed vertebrates) was one of the most important transformations in vertebrate evolution. Hypotheses of tetrapod origins rely heavily on the anatomy of a few tetrapod-like fish fossils from the Middle and Late Devonian period (393-359 million years ago)(1). These taxa-known as elpistostegalians-include Panderichthys(2), Elpistostege(3,4) and Tiktaalik(1,5), none of which has yet revealed the complete skeletal anatomy of the pectoral fin. Here we report a 1.57-metre-long articulated specimen of Elpistostege watsoni from the Upper Devonian period of Canada, which represents-to our knowledge-the most complete elpistostegalian yet found. High-energy computed tomography reveals that the skeleton of the pectoral fin has four proximodistal rows of radials (two of which include branched carpals) as well as two distal rows that are organized as digits and putative digits. Despite this skeletal pattern (which represents the most tetrapod-like arrangement of bones found in a pectoral fin to date), the fin retains lepidotrichia (fin rays) distal to the radials. We suggest that the vertebrate hand arose primarily from a skeletal pattern buried within the fairly typical aquatic pectoral fin of elpistostegalians. Elpistostege is potentially the sister taxon of all other tetrapods, and its appendages further blur the line between fish and land vertebrates.


  
Cryptic phenology in plants: Case studies, implications, and recommendations 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (11) : 3591-3608
作者:  Albert, Loren P.;  Restrepo-Coupe, Natalia;  Smith, Marielle N.;  Wu, Jin;  Chavana-Bryant, Cecilia;  Prohaska, Neill;  Taylor, Tyeen C.;  Martins, Giordane A.;  Ciais, Philippe;  Mao, Jiafu;  Arain, M. Altaf;  Li, Wei;  Shi, Xiaoying;  Ricciuto, Daniel M.;  Huxman, Travis E.;  McMahon, Sean M.;  Saleska, Scott R.
收藏  |  浏览/下载:12/0  |  提交时间:2019/11/27
climate change  dynamic global vegetation models  plant ecology  plant physiology  seasonality  terrestrial biosphere models  whole plant biology  
Shifts in tourists' sentiments and climate risk perceptions following mass coral bleaching of the Great Barrier Reef 期刊论文
NATURE CLIMATE CHANGE, 2019, 9 (7) : 535-+
作者:  Curnock, Matthew, I;  Marshall, Nadine A.;  Thiault, Lauric;  Heron, Scott F.;  Hoey, Jessica;  Williams, Genevieve;  Taylor, Bruce;  Pert, Petina L.;  Goldberg, Jeremy
收藏  |  浏览/下载:4/0  |  提交时间:2019/11/27
The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight 期刊论文
SCIENCE, 2019, 364 (6436) : 144-+
作者:  Garrett-Bakelman, Francine E.;  Darshi, Manjula;  Green, Stefan J.;  Gur, Ruben C.;  Lin, Ling;  Macias, Brandon R.;  McKenna, Miles J.;  Meydan, Cem;  Mishra, Tejaswini;  Nasrini, Jad;  Piening, Brian D.;  Rizzardi, Lindsay F.;  Sharma, Kumar;  Siamwala, Jamila H.;  Taylor, Lynn;  Vitaterna, Martha Hotz;  Afkarian, Maryam;  Afshinnekoo, Ebrahim;  Ahadi, Sara;  Ambati, Aditya;  Arya, Maneesh;  Bezdan, Daniela;  Callahan, Colin M.;  Chen, Songjie;  Choi, Augustine M. K.;  Chlipala, George E.;  Contrepois, Kevin;  Covington, Marisa;  Crucian, Brian E.;  De Vivo, Immaculata;  Dinges, David F.;  Ebert, Douglas J.;  Feinberg, Jason I.;  Gandara, Jorge A.;  George, Kerry A.;  Goutsias, John;  Grills, George S.;  Hargens, Alan R.;  Heer, Martina;  Hillary, Ryan P.;  Hoofnagle, Andrew N.;  Hook, Vivian Y. H.;  Jenkinson, Garrett;  Jiang, Peng;  Keshavarzian, Ali;  Laurie, Steven S.;  Lee-McMullen, Brittany;  Lumpkins, Sarah B.;  MacKay, Matthew;  Maienschein-Cline, Mark G.;  Melnick, Ari M.;  Moore, Tyler M.;  Nakahira, Kiichi;  Patel, Hemal H.;  Pietrzyk, Robert;  Rao, Varsha;  Saito, Rintaro;  Salins, Denis N.;  Schilling, Jan M.;  Sears, Dorothy D.;  Sheridan, Caroline K.;  Stenger, Michael B.;  Tryggvadottir, Rakel;  Urban, Alexander E.;  Vaisar, Tomas;  Van Espen, Benjamin;  Zhang, Jing;  Ziegler, Michael G.;  Zwart, Sara R.;  Charles, John B.;  Kundrot, Craig E.;  Scott, Graham B. I.;  Bailey, Susan M.;  Basner, Mathias;  Feinberg, Andrew P.;  Lee, Stuart M. C.;  Mason, Christopher E.;  Mignot, Emmanuel;  Rana, Brinda K.;  Smith, Scott M.;  Snyder, Michael P.;  Turek, Fred W.
收藏  |  浏览/下载:38/0  |  提交时间:2019/11/27
High carbon burial rates by small ponds inthelandscape 期刊论文
FRONTIERS IN ECOLOGY AND THE ENVIRONMENT, 2019, 17 (1) : 25-30
作者:  Taylor, Scott;  Gilbert, Peter J.;  Cooke, David A.;  Deary, Michael E.;  Jeffries, Michael J.
收藏  |  浏览/下载:0/0  |  提交时间:2019/04/09
Parasites and Host Species Barriers in Animal Hybrid Zones 期刊论文
TRENDS IN ECOLOGY & EVOLUTION, 2019, 34 (1) : 19-30
作者:  Theodosopoulos, Angela N.;  Hund, Amanda K.;  Taylor, Scott A.
收藏  |  浏览/下载:0/0  |  提交时间:2019/04/09