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Ecological insights from three decades of animal movement tracking across a changing Arctic 期刊论文
Science, 2020
作者:  Sarah C. Davidson;  Gil Bohrer;  Eliezer Gurarie;  Scott LaPoint;  Peter J. Mahoney;  Natalie T. Boelman;  Jan U. H. Eitel;  Laura R. Prugh;  Lee A. Vierling;  Jyoti Jennewein;  Emma Grier;  Ophélie Couriot;  Allicia P. Kelly;  Arjan J. H. Meddens;  Ruth Y. Oliver;  Roland Kays;  Martin Wikelski;  Tomas Aarvak;  Joshua T. Ackerman;  José A. Alves;  Erin Bayne;  Bryan Bedrosian;  Jerrold L. Belant;  Andrew M. Berdahl;  Alicia M. Berlin;  Dominique Berteaux;  Joël Bêty;  Dmitrijs Boiko;  Travis L. Booms;  Bridget L. Borg;  Stan Boutin;  W. Sean Boyd;  Kane Brides;  Stephen Brown;  Victor N. Bulyuk;  Kurt K. Burnham;  David Cabot;  Michael Casazza;  Katherine Christie;  Erica H. Craig;  Shanti E. Davis;  Tracy Davison;  Dominic Demma;  Christopher R. DeSorbo;  Andrew Dixon;  Robert Domenech;  Götz Eichhorn;  Kyle Elliott;  Joseph R. Evenson;  Klaus-Michael Exo;  Steven H. Ferguson;  Wolfgang Fiedler;  Aaron Fisk;  Jérôme Fort;  Alastair Franke;  Mark R. Fuller;  Stefan Garthe;  Gilles Gauthier;  Grant Gilchrist;  Petr Glazov;  Carrie E. Gray;  David Grémillet;  Larry Griffin;  Michael T. Hallworth;  Autumn-Lynn Harrison;  Holly L. Hennin;  J. Mark Hipfner;  James Hodson;  James A. Johnson;  Kyle Joly;  Kimberly Jones;  Todd E. Katzner;  Jeff W. Kidd;  Elly C. Knight;  Michael N. Kochert;  Andrea Kölzsch;  Helmut Kruckenberg;  Benjamin J. Lagassé;  Sandra Lai;  Jean-François Lamarre;  Richard B. Lanctot;  Nicholas C. Larter;  A. David M. Latham;  Christopher J. Latty;  James P. Lawler;  Don-Jean Léandri-Breton;  Hansoo Lee;  Stephen B. Lewis;  Oliver P. Love;  Jesper Madsen;  Mark Maftei;  Mark L. Mallory;  Buck Mangipane;  Mikhail Y. Markovets;  Peter P. Marra;  Rebecca McGuire;  Carol L. McIntyre;  Emily A. McKinnon;  Tricia A. Miller;  Sander Moonen;  Tong Mu;  Gerhard J. D. M. Müskens;  Janet Ng;  Kerry L. Nicholson;  Ingar Jostein Øien;  Cory Overton;  Patricia A. Owen;  Allison Patterson;  Aevar Petersen;  Ivan Pokrovsky;  Luke L. Powell;  Rui Prieto;  Petra Quillfeldt;  Jennie Rausch;  Kelsey Russell;  Sarah T. Saalfeld;  Hans Schekkerman;  Joel A. Schmutz;  Philipp Schwemmer;  Dale R. Seip;  Adam Shreading;  Mónica A. Silva;  Brian W. Smith;  Fletcher Smith;  Jeff P. Smith;  Katherine R. S. Snell;  Aleksandr Sokolov;  Vasiliy Sokolov;  Diana V Solovyeva;  Mathew S. Sorum;  Grigori Tertitski;  J. F. Therrien;  Kasper Thorup;  T. Lee Tibbitts;  Ingrid Tulp;  Brian D. Uher-Koch;  Rob S. A. van Bemmelen;  Steven Van Wilgenburg;  Andrew L. Von Duyke;  Jesse L. Watson;  Bryan D. Watts;  Judy A. Williams;  Matthew T. Wilson;  James R. Wright;  Michael A. Yates;  David J. Yurkowski;  Ramūnas Žydelis;  Mark Hebblewhite
收藏  |  浏览/下载:18/0  |  提交时间:2020/11/09
COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data 期刊论文
Global Change Biology, 2020
作者:  Ben Bond‐;  Lamberty;  Danielle S. Christianson;  Avni Malhotra;  Stephanie C. Pennington;  Debjani Sihi;  Amir AghaKouchak;  Hassan Anjileli;  M. Altaf Arain;  Juan J. Armesto;  Samaneh Ashraf;  Mioko Ataka;  Dennis Baldocchi;  Thomas Andrew Black;  Nina Buchmann;  Mariah S. Carbone;  Shih‐;  Chieh Chang;  Patrick Crill;  Peter S. Curtis;  Eric A. Davidson;  Ankur R. Desai;  John E. Drake;  Tarek S. El‐;  Madany;  Michael Gavazzi;  Carolyn‐;  Monika Gö;  rres;  Christopher M. Gough;  Michael Goulden;  Jillian Gregg;  Omar Gutié;  rrez del Arroyo;  Jin‐;  Sheng He;  Takashi Hirano;  Anya Hopple;  Holly Hughes;  ;  rvi Jä;  rveoja;  Rachhpal Jassal;  Jinshi Jian;  Haiming Kan;  Jason Kaye;  Yuji Kominami;  Naishen Liang;  David Lipson;  Catriona A. Macdonald;  Kadmiel Maseyk;  Kayla Mathes;  Marguerite Mauritz;  Melanie A. Mayes;  Steve McNulty;  Guofang Miao;  Mirco Migliavacca;  Scott Miller;  Chelcy F. Miniat;  Jennifer G. Nietz;  Mats B. Nilsson;  Asko Noormets;  Hamidreza Norouzi;  Christine S. O’;  Connell;  Bruce Osborne;  Cecilio Oyonarte;  Zhuo Pang;  Matthias Peichl;  Elise Pendall;  Jorge F. Perez‐;  Quezada;  Claire L. Phillips;  Richard P. Phillips;  James W. Raich;  Alexandre A. Renchon;  Nadine K. Ruehr;  Enrique P. Sá;  nchez‐;  Cañ;  ete;  Matthew Saunders;  Kathleen E. Savage;  Marion Schrumpf;  Russell L. Scott;  Ulli Seibt;  Whendee L. Silver;  Wu Sun;  Daphne Szutu;  Kentaro Takagi;  Masahiro Takagi;  Munemasa Teramoto;  Mark G. Tjoelker;  Susan Trumbore;  Masahito Ueyama;  Rodrigo Vargas;  Ruth K. Varner;  Joseph Verfaillie;  Christoph Vogel;  Jinsong Wang;  Greg Winston;  Tana E. Wood;  Juying Wu;  Thomas Wutzler;  Jiye Zeng;  Tianshan Zha;  Quan Zhang;  Junliang Zou
收藏  |  浏览/下载:13/0  |  提交时间:2020/10/12
Editorial Expression of Concern: Quantized Majorana conductance 期刊论文
NATURE, 2020: 1-1
作者:  Ge, Peng;  Scholl, Dean;  Prokhorov, Nikolai S.;  Avaylon, Jaycob;  Shneider, Mikhail M.;  Browning, Christopher;  Buth, Sergey A.;  Plattner, Michel;  Chakraborty, Urmi;  Ding, Ke;  Leiman, Petr G.;  Miller, Jeff F.;  Zhou, Z. Hong
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/03
Global airborne sampling reveals a previously unobserved dimethyl sulfide oxidation mechanism in the marine atmosphere 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (9) : 4505-4510
作者:  Veres, Patrick R.;  Neuman, J. Andrew;  Bertram, Timothy H.;  Assaf, Emmanuel;  Wolfe, Glenn M.;  Williamson, Christina J.;  Weinzierl, Bernadett;  Tilmes, Simone;  Thompson, Chelsea R.;  Thames, Alexander B.;  Schroder, Jason C.;  Saiz-Lopez, Alfonso;  Rollins, Andrew W.;  Roberts, James M.;  Price, Derek;  Peischl, Jeff;  Nault, Benjamin A.;  Moller, Kristian H.;  Miller, David O.;  Meinardi, Simone;  Li, Qinyi;  Lamarque, Jean-Francois;  Kupc, Agnieszka;  Kjaergaard, Henrik G.;  Kinnison, Douglas;  Jimenez, Jose L.;  Jernigan, Christopher M.;  Hornbrook, Rebecca S.;  Hills, Alan;  Dollner, Maximilian;  Day, Douglas A.;  Cuevas, Carlos A.;  Campuzano-Jost, Pedro;  Burkholder, James;  Bui, T. Paul;  Brune, William H.;  Brown, Steven S.;  Brock, Charles A.;  Bourgeois, Ilann;  Blake, Donald R.;  Apel, Eric C.;  Ryerson, Thomas B.
收藏  |  浏览/下载:20/0  |  提交时间:2020/05/13
dimethyl sulfide  marine sulfur  autoxidation  marine aerosols  aerosol sulfate  
The molecular basis for sugar import in malaria parasites 期刊论文
NATURE, 2020, 578 (7794) : 321-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:16/0  |  提交时间:2020/07/03

Elucidating the mechanism of sugar import requires a molecular understanding of how transporters couple sugar binding and gating events. Whereas mammalian glucose transporters (GLUTs) are specialists(1), the hexose transporter from the malaria parasite Plasmodium falciparum PfHT1(2,3) has acquired the ability to transport both glucose and fructose sugars as efficiently as the dedicated glucose (GLUT3) and fructose (GLUT5) transporters. Here, to establish the molecular basis of sugar promiscuity in malaria parasites, we determined the crystal structure of PfHT1 in complex with d-glucose at a resolution of 3.6 angstrom. We found that the sugar-binding site in PfHT1 is very similar to those of the distantly related GLUT3 and GLUT5 structures(4,5). Nevertheless, engineered PfHT1 mutations made to match GLUT sugar-binding sites did not shift sugar preferences. The extracellular substrate-gating helix TM7b in PfHT1 was positioned in a fully occluded conformation, providing a unique glimpse into how sugar binding and gating are coupled. We determined that polar contacts between TM7b and TM1 (located about 15 angstrom from d-glucose) are just as critical for transport as the residues that directly coordinate d-glucose, which demonstrates a strong allosteric coupling between sugar binding and gating. We conclude that PfHT1 has achieved substrate promiscuity not by modifying its sugar-binding site, but instead by evolving substrate-gating dynamics.


Crystal structure of the Plasmodium falciparum hexose transporter PfHT1 reveals the molecular basis of its ability to transport multiple types of sugar as efficiently as the dedicated mammalian glucose and fructose transporters.


  
Processive extrusion of polypeptide loops by a Hsp100 disaggregase 期刊论文
NATURE, 2020, 578 (7794) : 317-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:16/0  |  提交时间:2020/07/03

The ability to reverse protein aggregation is vital to cells(1,2). Hsp100 disaggregases such as ClpB and Hsp104 are proposed to catalyse this reaction by translocating polypeptide loops through their central pore(3,4). This model of disaggregation is appealing, as it could explain how polypeptides entangled within aggregates can be extracted and subsequently refolded with the assistance of Hsp70(4,5). However, the model is also controversial, as the necessary motor activity has not been identified(6-8) and recent findings indicate non-processive mechanisms such as entropic pulling or Brownian ratcheting(9,10). How loop formation would be accomplished is also obscure. Indeed, cryo-electron microscopy studies consistently show single polypeptide strands in the Hsp100 pore(11,12). Here, by following individual ClpB-substrate complexes in real time, we unambiguously demonstrate processive translocation of looped polypeptides. We integrate optical tweezers with fluorescent-particle tracking to show that ClpB translocates both arms of the loop simultaneously and switches to single-arm translocation when encountering obstacles. ClpB is notably powerful and rapid  it exerts forces of more than 50 pN at speeds of more than 500 residues per second in bursts of up to 28 residues. Remarkably, substrates refold while exiting the pore, analogous to co-translational folding. Our findings have implications for protein-processing phenomena including ubiquitin-mediated remodelling by Cdc48 (or its mammalian orthologue p97)(13) and degradation by the 26S proteasome(14).


A combination of optical tweezers and fluorescent-particle tracking is used to dissect the dynamics of the Hsp100 disaggregase ClpB, and show that the processive extrusion of polypeptide loops is the mechanistic basis of its activity.


  
Activation of the GLP-1 receptor by a non-peptidic agonist 期刊论文
NATURE, 2020, 577 (7790) : 432-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/03

Class B G-protein-coupled receptors are major targets for the treatment of chronic diseases, including diabetes and obesity(1). Structures of active receptors reveal peptide agonists engage deep within the receptor core, leading to an outward movement of extracellular loop 3 and the tops of transmembrane helices 6 and 7, an inward movement of transmembrane helix 1, reorganization of extracellular loop 2 and outward movement of the intracellular side of transmembrane helix 6, resulting in G-protein interaction and activation(2-6). Here we solved the structure of a non-peptide agonist, TT-OAD2, bound to the glucagon-like peptide-1 (GLP-1) receptor. Our structure identified an unpredicted non-peptide agonist-binding pocket in which reorganization of extracellular loop 3 and transmembrane helices 6 and 7 manifests independently of direct ligand interaction within the deep transmembrane domain pocket. TT-OAD2 exhibits biased agonism, and kinetics of G-protein activation and signalling that are distinct from peptide agonists. Within the structure, TT-OAD2 protrudes beyond the receptor core to interact with the lipid or detergent, providing an explanation for the distinct activation kinetics that may contribute to the clinical efficacy of this compound series. This work alters our understanding of the events that drive the activation of class B receptors.


  
Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions 期刊论文
NATURE COMMUNICATIONS, 2017, 8
作者:  Angle, Jordan C.;  Morin, Timothy H.;  Solden, Lindsey M.;  Narrowe, Adrienne B.;  Smith, Garrett J.;  Borton, Mikayla A.;  Rey-Sanchez, Camilo;  Daly, Rebecca A.;  Mirfenderesgi, Golnazalsdat;  Hoyt, David W.;  Riley, William J.;  Miller, Christopher S.;  Bohrer, Gil;  Wrighton, Kelly C.
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
A highly resolved food web for insect seed predators in a species-rich tropical forest 期刊论文
ECOLOGY LETTERS, 2019, 22 (10) : 1638-1649
作者:  Gripenberg, Sofia;  Basset, Yves;  Lewis, Owen T.;  Terry, J. Christopher D.;  Wright, S. Joseph;  Simon, Indira;  Fernandez, D. Catalina;  Cedeno-Sanchez, Marjorie;  Rivera, Marleny;  Barrios, Hector;  Brown, John W.;  Calderon, Osvaldo;  Cognato, Anthony I.;  Kim, Jorma;  Miller, Scott E.;  Morse, Geoffrey E.;  Pinzon-Navarro, Sara;  Quicke, Donald L. J.;  Robbins, Robert K.;  Salminen, Juha-Pekka;  Vesterinen, Eero
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
Apparent competition  Barro Colorado Island  host specialisation  interaction network  Janzen-Connell hypothesis  Panama  plant traits  quantitative food web  seed predation  
Zurich Statement on Future Actions on Per - and Polyfluoroalkyl Substances (PFASs) 期刊论文
ENVIRONMENTAL HEALTH PERSPECTIVES, 2018, 126 (8)
作者:  Ritscher, Amelie;  Wang, Zhanyun;  Scheringer, Martin;  Boucher, Justin M.;  Ahrens, Lutz;  Berger, Urs;  Bintein, Sylvain;  Bopp, Stephanie K.;  Borg, Daniel;  Buser, Andreas M.;  Cousins, Ian;  DeWitt, Jamie;  Fletcher, Tony;  Green, Christopher;  Herzke, Dorte;  Higgins, Christopher;  Huang, Jun;  Hung, Hayley;  Knepper, Thomas;  Lau, Christopher S.;  Leinala, Eeva;  Lindstrom, Andrew B.;  Liu, Jinxia;  Miller, Mark;  Ohno, Koichi;  Perkola, Noora;  Shi, Yali;  Haug, Line Smastuen;  Trier, Xenia;  Valsecchi, Sara;  van der Jagt, Katinka;  Vierke, Lena
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09