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Aqueous production of secondary organic aerosol from fossil-fuel emissions in winter Beijing haze 期刊论文
Proceedings of the National Academy of Science, 2021
作者:  Junfeng Wang;  Jianhuai Ye;  Qi Zhang;  Jian Zhao;  Yangzhou Wu;  Jingyi Li;  Dantong Liu;  Weijun Li;  Yange Zhang;  Cheng Wu;  Conghui Xie;  Yiming Qin;  Yali Lei;  Xiangpeng Huang;  Jianping Guo;  Pengfei Liu;  Pingqing Fu;  Yongjie Li;  Hyun Chul Lee;  Hyoungwoo Choi;  Jie Zhang;  Hong Liao;  Mindong Chen;  Yele Sun;  Xinlei Ge;  Scot T. Martin;  Daniel J. Jacob
收藏  |  浏览/下载:15/0  |  提交时间:2021/02/22
Fast sulfate formation from oxidation of SO2 by NO2 and HONO observed in Beijing haze 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Wang, Junfeng;  Li, Jingyi;  Ye, Jianhuai;  Zhao, Jian;  Wu, Yangzhou;  Hu, Jianlin;  Liu, Dantong;  Nie, Dongyang;  Shen, Fuzhen;  Huang, Xiangpeng;  Huang, Dan Dan;  Ji, Dongsheng;  Sun, Xu;  Xu, Weiqi;  Guo, Jianping;  Song, Shaojie;  Qin, Yiming;  Liu, Pengfei;  Turner, Jay R.;  Lee, Hyun Chul;  Hwang, Sungwoo;  Liao, Hong;  Martin, Scot T.;  Zhang, Qi;  Chen, Mindong;  Sun, Yele;  Ge, Xinlei;  Jacob, Daniel J.
收藏  |  浏览/下载:18/0  |  提交时间:2020/06/09
A neurotransmitter produced by gut bacteria modulates host sensory behaviour 期刊论文
NATURE, 2020
作者:  Zhao, Xiaoxu;  Song, Peng;  Wang, Chengcai;  Riis-Jensen, Anders C.;  Fu, Wei;  Deng, Ya;  Wan, Dongyang;  Kang, Lixing;  Ning, Shoucong;  Dan, Jiadong;  Venkatesan, T.;  Liu, Zheng;  Zhou, Wu;  Thygesen, Kristian S.;  Luo, Xin;  Pennycook, Stephen J.;  Loh, Kian Ping
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/03

A neuromodulator produced by commensalProvidenciabacteria that colonize the gut ofCaenorhabditis elegansmimics the functions of the cognate host molecule to manipulate a sensory decision of the host.


Animals coexist in commensal, pathogenic or mutualistic relationships with complex communities of diverse organisms, including microorganisms(1). Some bacteria produce bioactive neurotransmitters that have previously been proposed to modulate nervous system activity and behaviours of their hosts(2,3). However, the mechanistic basis of this microbiota-brain signalling and its physiological relevance are largely unknown. Here we show that inCaenorhabditis elegans, the neuromodulator tyramine produced by commensalProvidenciabacteria, which colonize the gut, bypasses the requirement for host tyramine biosynthesis and manipulates a host sensory decision. Bacterially produced tyramine is probably converted to octopamine by the host tyramine beta-hydroxylase enzyme. Octopamine, in turn, targets the OCTR-1 octopamine receptor on ASH nociceptive neurons to modulate an aversive olfactory response. We identify the genes that are required for tyramine biosynthesis inProvidencia, and show that these genes are necessary for the modulation of host behaviour. We further find thatC. eleganscolonized byProvidenciapreferentially select these bacteria in food choice assays, and that this selection bias requires bacterially produced tyramine and host octopamine signalling. Our results demonstrate that a neurotransmitter produced by gut bacteria mimics the functions of the cognate host molecule to override host control of a sensory decision, and thereby promotes fitness of both the host and the microorganism.


  
Premature mortality related to United States cross-state air pollution 期刊论文
NATURE, 2020, 578 (7794) : 261-+
作者:  Helmink, Beth A.;  Reddy, Sangeetha M.;  Gao, Jianjun;  Zhang, Shaojun;  Basar, Rafet;  Thakur, Rohit;  Yizhak, Keren;  Sade-Feldman, Moshe;  Blando, Jorge;  Han, Guangchun;  Gopalakrishnan, Vancheswaran;  Xi, Yuanxin;  Zhao, Hao;  Amaria, Rodabe N.;  Tawbi, Hussein A.;  Cogdill, Alex P.;  Liu, Wenbin;  LeBleu, Valerie S.;  Kugeratski, Fernanda G.;  Patel, Sapna;  Davies, Michael A.;  Hwu, Patrick;  Lee, Jeffrey E.;  Gershenwald, Jeffrey E.;  Lucci, Anthony;  Arora, Reetakshi;  Woodman, Scott;  Keung, Emily Z.;  Gaudreau, Pierre-Olivier;  Reuben, Alexandre;  Spencer, Christine N.;  Burton, Elizabeth M.;  Haydu, Lauren E.;  Lazar, Alexander J.;  Zapassodi, Roberta;  Hudgens, Courtney W.;  Ledesma, Deborah A.;  Ong, SuFey;  Bailey, Michael;  Warren, Sarah;  Rao, Disha;  Krijgsman, Oscar;  Rozeman, Elisa A.;  Peeper, Daniel;  Blank, Christian U.;  Schumacher, Ton N.;  Butterfield, Lisa H.;  Zelazowska, Monika A.;  McBride, Kevin M.;  Kalluri, Raghu;  Allison, James;  Petitprez, Florent;  Fridman, Wolf Herman;  Sautes-Fridman, Catherine;  Hacohen, Nir;  Rezvani, Katayoun;  Sharma, Padmanee;  Tetzlaff, Michael T.;  Wang, Linghua;  Wargo, Jennifer A.
收藏  |  浏览/下载:37/0  |  提交时间:2020/05/13

Outdoor air pollution adversely affects human health and is estimated to be responsible for five to ten per cent of the total annual premature mortality in the contiguous United States(1-3). Combustion emissions from a variety of sources, such as power generation or road traffic, make a large contribution to harmful air pollutants such as ozone and fine particulate matter (PM2.5)(4). Efforts to mitigate air pollution have focused mainly on the relationship between local emission sources and local air quality(2). Air quality can also be affected by distant emission sources, however, including emissions from neighbouring federal states(5,6). This cross-state exchange of pollution poses additional regulatory challenges. Here we quantify the exchange of air pollution among the contiguous United States, and assess its impact on premature mortality that is linked to increased human exposure to PM2.5 and ozone from seven emission sectors for 2005 to 2018. On average, we find that 41 to 53 per cent of air-quality-related premature mortality resulting from a state'  s emissions occurs outside that state. We also find variations in the cross-state contributions of different emission sectors and chemical species to premature mortality, and changes in these variations over time. Emissions from electric power generation have the greatest cross-state impacts as a fraction of their total impacts, whereas commercial/residential emissions have the smallest. However, reductions in emissions from electric power generation since 2005 have meant that, by 2018, cross-state premature mortality associated with the commercial/residential sector was twice that associated with power generation. In terms of the chemical species emitted, nitrogen oxides and sulfur dioxide emissions caused the most cross-state premature deaths in 2005, but by 2018 primary PM2.5 emissions led to cross-state premature deaths equal to three times those associated with sulfur dioxide emissions. These reported shifts in emission sectors and emission species that contribute to premature mortality may help to guide improvements to air quality in the contiguous United States.


  
The molecular basis for sugar import in malaria parasites 期刊论文
NATURE, 2020, 578 (7794) : 321-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:18/0  |  提交时间:2020/07/03

Elucidating the mechanism of sugar import requires a molecular understanding of how transporters couple sugar binding and gating events. Whereas mammalian glucose transporters (GLUTs) are specialists(1), the hexose transporter from the malaria parasite Plasmodium falciparum PfHT1(2,3) has acquired the ability to transport both glucose and fructose sugars as efficiently as the dedicated glucose (GLUT3) and fructose (GLUT5) transporters. Here, to establish the molecular basis of sugar promiscuity in malaria parasites, we determined the crystal structure of PfHT1 in complex with d-glucose at a resolution of 3.6 angstrom. We found that the sugar-binding site in PfHT1 is very similar to those of the distantly related GLUT3 and GLUT5 structures(4,5). Nevertheless, engineered PfHT1 mutations made to match GLUT sugar-binding sites did not shift sugar preferences. The extracellular substrate-gating helix TM7b in PfHT1 was positioned in a fully occluded conformation, providing a unique glimpse into how sugar binding and gating are coupled. We determined that polar contacts between TM7b and TM1 (located about 15 angstrom from d-glucose) are just as critical for transport as the residues that directly coordinate d-glucose, which demonstrates a strong allosteric coupling between sugar binding and gating. We conclude that PfHT1 has achieved substrate promiscuity not by modifying its sugar-binding site, but instead by evolving substrate-gating dynamics.


Crystal structure of the Plasmodium falciparum hexose transporter PfHT1 reveals the molecular basis of its ability to transport multiple types of sugar as efficiently as the dedicated mammalian glucose and fructose transporters.


  
Processive extrusion of polypeptide loops by a Hsp100 disaggregase 期刊论文
NATURE, 2020, 578 (7794) : 317-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:17/0  |  提交时间:2020/07/03

The ability to reverse protein aggregation is vital to cells(1,2). Hsp100 disaggregases such as ClpB and Hsp104 are proposed to catalyse this reaction by translocating polypeptide loops through their central pore(3,4). This model of disaggregation is appealing, as it could explain how polypeptides entangled within aggregates can be extracted and subsequently refolded with the assistance of Hsp70(4,5). However, the model is also controversial, as the necessary motor activity has not been identified(6-8) and recent findings indicate non-processive mechanisms such as entropic pulling or Brownian ratcheting(9,10). How loop formation would be accomplished is also obscure. Indeed, cryo-electron microscopy studies consistently show single polypeptide strands in the Hsp100 pore(11,12). Here, by following individual ClpB-substrate complexes in real time, we unambiguously demonstrate processive translocation of looped polypeptides. We integrate optical tweezers with fluorescent-particle tracking to show that ClpB translocates both arms of the loop simultaneously and switches to single-arm translocation when encountering obstacles. ClpB is notably powerful and rapid  it exerts forces of more than 50 pN at speeds of more than 500 residues per second in bursts of up to 28 residues. Remarkably, substrates refold while exiting the pore, analogous to co-translational folding. Our findings have implications for protein-processing phenomena including ubiquitin-mediated remodelling by Cdc48 (or its mammalian orthologue p97)(13) and degradation by the 26S proteasome(14).


A combination of optical tweezers and fluorescent-particle tracking is used to dissect the dynamics of the Hsp100 disaggregase ClpB, and show that the processive extrusion of polypeptide loops is the mechanistic basis of its activity.


  
Activation of the GLP-1 receptor by a non-peptidic agonist 期刊论文
NATURE, 2020, 577 (7790) : 432-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/03

Class B G-protein-coupled receptors are major targets for the treatment of chronic diseases, including diabetes and obesity(1). Structures of active receptors reveal peptide agonists engage deep within the receptor core, leading to an outward movement of extracellular loop 3 and the tops of transmembrane helices 6 and 7, an inward movement of transmembrane helix 1, reorganization of extracellular loop 2 and outward movement of the intracellular side of transmembrane helix 6, resulting in G-protein interaction and activation(2-6). Here we solved the structure of a non-peptide agonist, TT-OAD2, bound to the glucagon-like peptide-1 (GLP-1) receptor. Our structure identified an unpredicted non-peptide agonist-binding pocket in which reorganization of extracellular loop 3 and transmembrane helices 6 and 7 manifests independently of direct ligand interaction within the deep transmembrane domain pocket. TT-OAD2 exhibits biased agonism, and kinetics of G-protein activation and signalling that are distinct from peptide agonists. Within the structure, TT-OAD2 protrudes beyond the receptor core to interact with the lipid or detergent, providing an explanation for the distinct activation kinetics that may contribute to the clinical efficacy of this compound series. This work alters our understanding of the events that drive the activation of class B receptors.


  
The formation of human populations in South and Central Asia 期刊论文
SCIENCE, 2019, 365 (6457) : 999-+
作者:  Narasimhan, Vagheesh M.;  Patterson, Nick;  Moorjani, Priya;  Rohland, Nadin;  Bernardos, Rebecca;  Mallick, Swapan;  Lazaridis, Losif;  Nakatsuka, Nathan;  Olalde, Iffigo;  Lipson, Mark;  Kim, Alexander M.;  Olivieri, Luca M.;  Coppa, Alfredo;  Vidale, Massimo;  Mallory, James;  Moiseyev, Vyacheslav;  Kitov, Egor;  Monge, Janet;  Adamski, Nicole;  Alexi, Neel;  Broomandkhoshbacht, Nasreen;  Candilio, Francesca;  Callan, Kimberly;  Cheronet, Olivia;  Culleton, Brendan J.;  Ferry, Matthew;  Fernandes, Daniel;  Freilih, Suzanne;  Gamarra, Beatriz;  Gaudio, Daniel;  Hajdinjak, Mateja;  Harney, Eadaoin;  Harper, Thomas K.;  Keatin, Denise;  Lawson, Ann Marie;  Mah, Matthew;  Mandl, Kirsten;  Michel, Megan;  Novak, Mario;  Oppenheimer, Jonas;  Rai, Niraj;  Sirak, Kendra;  Slon, Viviane;  Stewardson, Kristin;  Zalzala, Fatma;  Zhang, Zhao;  Akhatov, Gaziz;  Bagashev, Anatoly N.;  Bagnera, Alessandra;  Baitanayev, Bauryzhan;  Bendezu-Sarmiento, Julio;  Bissembaev, Arman A.;  Bonora, Gian Luca;  Chargynov, Temirlan T.;  Chikisheva, Tatiana;  Dashkovskiy, Petr K.;  Derevianko, Anatoly;  Dobes, Miroslav;  Douka, Katerina;  Dubova, Nadezhda;  Duisengali, Meiram N.;  Enshin, Dmitry;  Epimakhov, Andrey;  Fribus, Alexey V.;  Fuller, Dorian;  Goryachev, Alexander;  Gromov, Andrey;  Grushin, Sergey P.;  Hanks, Bryan;  Judd, Margaret;  Kazizov, Erlan;  Khokhlov, Aleksander;  Krygin, Aleksander P.;  Kupriyanova, Elena;  Kuznetsov, Pavel;  Luiseli, Donata;  Maksudov, Farhod;  Mamedov, Asian M.;  Mamirov, Talgat B.;  Meiklejohn, Christopher;  Merrett, Deborah C.;  Micheli, Roberto;  Mochalov, Oleg;  Mustafokulov, Samariddin;  Nayak, Ayushi;  Pettener, Davide;  Potts, Richard;  Razhev, Dmitry;  Rykun, Marina;  Sarno, Stefania;  Savenkova, Tatyana M.;  Sikhymbaeva, Kulyan;  Slepchenko, Sergey M.;  Soltobaev, Oroz A.;  Stepanova, Nadezhda;  Svyatko, Svetlana;  Tabaldiev, Kubatbek;  Teschler-Nicola, Maria;  Tishkin, Alexey A.;  Tkachev, Vitaly V.;  Vasilyev, Sergey;  Veleminsky, Petr;  Voyakin, Dmitriy;  Yermolayeva, Antonina;  Zahir, Muhammad;  Zubkov, Valery S.;  Zubova, Alisa;  Shinde, Vasant S.;  Lalueza-Fox, Carles;  Meyer, Matthias;  Anthony, David;  Boivin, Nicole;  Thangaraj, Kumnarasamy;  Kennett, Douglas J.;  Frachetti, Michael;  Pinhasi, Ron;  Reich, David
收藏  |  浏览/下载:22/0  |  提交时间:2019/11/27
Climatic controls of decomposition drive the global biogeography of forest-tree symbioses (vol 569, pg 404, 2019) 期刊论文
NATURE, 2019, 571 (7765) : E8-E8
作者:  Steidinger, B. S.;  Crowther, T. W.;  Liang, J.;  Van Nuland, M. E.;  Werner, G. D. A.;  Reich, P. B.;  Nabuurs, G. J.;  de-Miguel, S.;  Zhou, M.;  Picard, N.;  Herault, B.;  Zhao, X.;  Zhang, C.;  Routh, D.;  Peay, K. G.
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
Climatic controls of decomposition drive the global biogeography of forest-tree symbioses 期刊论文
Nature, 2019, 569: 404-408
作者:  B. S. Steidinger;  T. W. Crowther;  J. Liang;  M. E. Van Nuland;  G. D. A. Werner;  P. B. Reich;  G. J. Nabuurs;  S. de-Miguel;  M. Zhou;  N. Picard;  B. Herault;  X. Zhao;  C. Zhang;  D. Routh;  K. G. Peay;  GFBI consortium
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27