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A dominant autoinflammatory disease caused by non-cleavable variants of RIPK1 期刊论文
NATURE, 2020, 577 (7788) : 109-+
作者:  Tao, Panfeng;  Sun, Jinqiao;  Wu, Zheming;  Wang, Shihao;  Wang, Jun;  Li, Wanjin;  Pan, Heling;  Bai, Renkui;  Zhang, Jiahui;  Wang, Ying;  Lee, Pui Y.;  Ying, Wenjing;  Zhou, Qinhua;  Hou, Jia;  Wang, Wenjie;  Sun, Bijun;  Yang, Mi;  Liu, Danru;  Fang, Ran;  Han, Huan;  Yang, Zhaohui;  Huang, Xin;  Li, Haibo;  Deuitch, Natalie;  Zhang, Yuan;  Dissanayake, Dilan;  Haude, Katrina;  McWalter, Kirsty;  Roadhouse, Chelsea;  MacKenzie, Jennifer J.;  Laxer, Ronald M.;  Aksentijevich, Ivona;  Yu, Xiaomin;  Wang, Xiaochuan;  Yuan, Junying;  Zhou, Qing
收藏  |  浏览/下载:21/0  |  提交时间:2020/07/03

Activation of RIPK1 controls TNF-mediated apoptosis, necroptosis and inflammatory pathways(1). Cleavage of human and mouse RIPK1 after residues D324 and D325, respectively, by caspase-8 separates the RIPK1 kinase domain from the intermediate and death domains. The D325A mutation in mouse RIPK1 leads to embryonic lethality during mouse development(2,3). However, the functional importance of blocking caspase-8-mediated cleavage of RIPK1 on RIPK1 activation in humans is unknown. Here we identify two families with variants in RIPK1 (D324V and D324H) that lead to distinct symptoms of recurrent fevers and lymphadenopathy in an autosomaldominant manner. Impaired cleavage of RIPK1 D324 variants by caspase-8 sensitized patients'  peripheral blood mononuclear cells to RIPK1 activation, apoptosis and necroptosis induced by TNF. The patients showed strong RIPK1-dependent activation of inflammatory signalling pathways and overproduction of inflammatory cytokines and chemokines compared with unaffected controls. Furthermore, we show that expression of the RIPK1 mutants D325V or D325H in mouse embryonic fibroblasts confers not only increased sensitivity to RIPK1 activation-mediated apoptosis and necroptosis, but also induction of pro-inflammatory cytokines such as IL-6 and TNF. By contrast, patient-derived fibroblasts showed reduced expression of RIPK1 and downregulated production of reactive oxygen species, resulting in resistance to necroptosis and ferroptosis. Together, these data suggest that human non-cleavable RIPK1 variants promote activation of RIPK1, and lead to an autoinflammatory disease characterized by hypersensitivity to apoptosis and necroptosis and increased inflammatory response in peripheral blood mononuclear cells, as well as a compensatory mechanism to protect against several pro-death stimuli in fibroblasts.


  
The evolutionary history of 2,658 cancers 期刊论文
NATURE, 2020, 578 (7793) : 122-+
作者:  Tao, Panfeng;  Sun, Jinqiao;  Wu, Zheming;  Wang, Shihao;  Wang, Jun;  Li, Wanjin;  Pan, Heling;  Bai, Renkui;  Zhang, Jiahui;  Wang, Ying;  Lee, Pui Y.;  Ying, Wenjing;  Zhou, Qinhua;  Hou, Jia;  Wang, Wenjie;  Sun, Bijun;  Yang, Mi;  Liu, Danru;  Fang, Ran;  Han, Huan;  Yang, Zhaohui;  Huang, Xin;  Li, Haibo;  Deuitch, Natalie;  Zhang, Yuan;  Dissanayake, Dilan;  Haude, Katrina;  McWalter, Kirsty;  Roadhouse, Chelsea;  MacKenzie, Jennifer J.;  Laxer, Ronald M.;  Aksentijevich, Ivona;  Yu, Xiaomin;  Wang, Xiaochuan;  Yuan, Junying;  Zhou, Qing
收藏  |  浏览/下载:33/0  |  提交时间:2020/07/03

Cancer develops through a process of somatic evolution(1,2). Sequencing data from a single biopsy represent a snapshot of this process that can reveal the timing of specific genomic aberrations and the changing influence of mutational processes(3). Here, by whole-genome sequencing analysis of 2,658 cancers as part of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA)(4), we reconstruct the life history and evolution of mutational processes and driver mutation sequences of 38 types of cancer. Early oncogenesis is characterized by mutations in a constrained set of driver genes, and specific copy number gains, such as trisomy 7 in glioblastoma and isochromosome 17q in medulloblastoma. The mutational spectrum changes significantly throughout tumour evolution in 40% of samples. A nearly fourfold diversification of driver genes and increased genomic instability are features of later stages. Copy number alterations often occur in mitotic crises, and lead to simultaneous gains of chromosomal segments. Timing analyses suggest that driver mutations often precede diagnosis by many years, if not decades. Together, these results determine the evolutionary trajectories of cancer, and highlight opportunities for early cancer detection.


  
A genome-wide association study identifies six novel risk loci for primary biliary cholangitis 期刊论文
NATURE COMMUNICATIONS, 2017, 8
作者:  Qiu, Fang;  Tang, Ruqi;  Zuo, Xianbo;  Shi, Xingjuan;  Wei, Yiran;  Zheng, Xiaodong;  Dai, Yaping;  Gong, Yuhua;  Wang, Lan;  Xu, Ping;  Zhu, Xiang;  Wu, Jian;  Han, Chongxu;  Gao, Yueqiu;  Zhang, Kui;  Jiang, Yuzhang;  Zhou, Jianbo;  Shao, Youlin;  Hu, Zhigang;  Tian, Ye;  Zhang, Haiyan;  Dai, Na;  Liu, Lei;  Wu, Xudong;  Zhao, Weifeng;  Zhang, Xiaomin;  Zang, Zhidong;  Nie, Jinshan;  Sun, Weihao;  Zhao, Yi;  Mao, Yuan;  Jiang, Po;  Ji, Hualiang;  Dong, Qing;  Li, Junming;  Li, Zhenzhong;  Bai, Xinli;  Li, Li;  Lin, Maosong;  Dong, Ming;  Li, Jinxin;  Zhu, Ping;  Wang, Chan;  Zhang, Yanqiu;  Jiang, Peng;  Wang, Yujue;  Jawed, Rohil;  Xu, Jing;  Zhang, Yu;  Wang, Qixia;  Yang, Yue;  Yang, Fan;  Lian, Min;  Jiang, Xiang;  Xiao, Xiao;  Li, Yanmei;  Fang, Jingyuan;  Qiu, Dekai;  Zhu, Zhen;  Qiu, Hong;  Zhang, Jianqiong;  Tian, Wenyan;  Chen, Sufang;  Jiang, Ling;  Ji, Bing;  Li, Ping;  Chen, Guochang;  Wu, Tianxue;  Sun, Yan;  Yu, Jianjiang;  Tang, Huijun;  He, Michun;  Xia, Min;  Pei, Hao;  Huang, Lihua;  Qing, Zhuye;  Wu, Jianfang;  Huang, Qinghai;  Han, Junhai;  Xie, Wei;  Sun, Zhongsheng;  Guo, Jian;  He, Gengsheng;  Gershwin, M. Eric;  Lian, Zhexiong;  Liu, Xiang;  Seldin, Michael F.;  Liu, Xiangdong;  Chen, Weichang;  Ma, Xiong
收藏  |  浏览/下载:17/0  |  提交时间:2019/11/27
A Late Miocene Terrestrial Temperature History for the Northeastern Tibetan Plateau's Period of Tectonic Expansion 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (14) : 8375-8386
作者:  Chen, Chihao;  Bai, Yan;  Fang, Xiaomin;  Guo, Haichao;  Meng, Qingquan;  Zhang, Weilin;  Zhou, Pengchao;  Murodov, Azamdzhon
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
paleotemperature  paleoaltitude  climate drivers  GDGTs  Tibetan Plateau  Late Miocene  
Dust Storm Outbreak in Central Asia After similar to 3.5 kyr BP 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (13) : 7624-7633
作者:  Han, Wenxia;  Lu, Shuang;  Appel, Erwin;  Berger, Andre;  Madsen, David;  Vandenberghe, Jef;  Yu, Lupeng;  Han, Yongxiang;  Yang, Yibo;  Zhang, Tao;  Teng, Xiaohua;  Fang, Xiaomin
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Long-Term Variations in the Lithogenic Susceptibility of Chinese Eolian Deposits Since the Late Pliocene 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (2) : 726-735
作者:  Zan, Jinbo;  Fang, Xiaomin;  Li, Xiaojing;  Yan, Maodu;  Kang, Jian
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
Prolonged Monsoonal Moisture Availability Preconditioned Glaciation of the Tibetan Plateau During the Mid-Pleistocene Transition 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2018, 45 (23) : 13020-13030
作者:  Koutsodendris, Andreas;  Sachse, Dirk;  Appel, Erwin;  Herb, Christian;  Fischer, Tobias;  Fang, Xiaomin;  Pross, Joerg
收藏  |  浏览/下载:6/0  |  提交时间:2019/04/09
Rapid Intensification of Typhoon Mujigae (2015) under Different Sea Surface Temperatures: Structural Changes Leading to Rapid Intensification 期刊论文
JOURNAL OF THE ATMOSPHERIC SCIENCES, 2018, 75 (12) : 4313-4335
作者:  Chen, Xiaomin;  Xue, Ming;  Fang, Juan
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Hurricanes  Extreme events  Sea surface temperature  Tropical cyclones  Numerical analysis  modeling  
Late Pliocene Monsoonal Rainfall Gradients in Western China Recorded by the Eolian Deposits From the Linxia Basin, NE Tibetan Plateau 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2018, 123 (15) : 8047-8061
作者:  Zan, Jinbo;  Fang, Xiaomin;  Li, Xiaojing;  Zhang, Weilin;  Yan, Maodu;  Shen, Miaomiao
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Tectonic Control of a Change in Sedimentary Environment at similar to 10 Ma in the Northeastern Tibetan Plateau 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2018, 45 (14) : 6843-6852
作者:  Zhang, Tao;  Han, Wenxia;  Fang, Xiaomin;  Miao, Yunfa;  Zhang, Weilin;  Song, Chunhui;  Wang, Yadong;  Khatri, Dhan Bahadur;  Zhang, Zhigao
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09