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Climate control on terrestrial biospheric carbon turnover 期刊论文
Proceedings of the National Academy of Science, 2021
作者:  Timothy I. Eglinton;  Valier V. Galy;  Jordon D. Hemingway;  Xiaojuan Feng;  Hongyan Bao;  Thomas M. Blattmann;  Angela F. Dickens;  Hannah Gies;  Liviu Giosan;  Negar Haghipour;  Pengfei Hou;  Maarten Lupker;  Cameron P. McIntyre;  Daniel B. Montluçon;  Bernhard Peucker-Ehrenbrink;  Camilo Ponton;  Enno Schefuß;  Melissa S. Schwab;  Britta M. Voss;  Lukas Wacker;  Ying Wu;  Meixun Zhao
收藏  |  浏览/下载:10/0  |  提交时间:2021/02/22
Gainers and losers of surface and terrestrial water resources in China during 1989-2016 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Wang, Xinxin;  Xiao, Xiangming;  Zou, Zhenhua;  Dong, Jinwei;  Qin, Yuanwei;  Doughty, Russell B.;  Menarguez, Michael A.;  Chen, Bangqian;  Wang, Junbang;  Ye, Hui;  Ma, Jun;  Zhong, Qiaoyan;  Zhao, Bin;  Li, Bo
收藏  |  浏览/下载:21/0  |  提交时间:2020/07/14
Late-spring frost risk between 1959 and 2017 decreased in North America but increased in Europe and Asia 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (22) : 12192-12200
作者:  Zohner, Constantin M.;  Mo, Lidong;  Renner, Susanne S.;  Svenning, Jens-Christian;  Vitasse, Yann;  Benito, Blas M.;  Ordonez, Alejandro;  Baumgarten, Frederik;  Bastin, Jean-Francois;  Sebald, Veronica;  Reich, Peter B.;  Liang, Jingjing;  Nabuurs, Gert-Jan;  de-Miguel, Sergio;  Alberti, Giorgio;  Anton-Fernandez, Clara;  Balazy, Radomir;  Braendli, Urs-Beat;  Chen, Han Y. H.;  Chisholm, Chelsea;  Cienciala, Emil;  Dayanandan, Selvadurai;  Fayle, Tom M.;  Frizzera, Lorenzo;  Gianelle, Damiano;  Jagodzinski, Andrzej M.;  Jaroszewicz, Bogdan;  Jucker, Tommaso;  Kepfer-Rojas, Sebastian;  Khan, Mohammed Latif;  Kim, Hyun Seok;  Korjus, Henn;  Johannsen, Vivian Kvist;  Laarmann, Diana;  Lang, Mait;  Zawila-Niedzwiecki, Tomasz;  Niklaus, Pascal A.;  Paquette, Alain;  Pretzsch, Hans;  Saikia, Purabi;  Schall, Peter;  Seben, Vladimir;  Svoboda, Miroslav;  Tikhonova, Elena;  Viana, Helder;  Zhang, Chunyu;  Zhao, Xiuhai;  Crowther, Thomas W.
收藏  |  浏览/下载:19/0  |  提交时间:2020/05/13
climate change  phenology  spring leaf-out  late frost  freezing damage  
Evaluating China's anthropogenic CO2 emissions inventories: a northern China case study using continuous surface observations from 2005 to 2009 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (6) : 3569-3588
作者:  Dayalu, Archana;  Munger, J. William;  Wang, Yuxuan;  Wofsy, Steven C.;  Zhao, Yu;  Nehrkorn, Thomas;  Nielsen, Chris;  McElroy, Michael B.;  Chang, Rachel
收藏  |  浏览/下载:10/0  |  提交时间:2020/07/02
An engineered PET depolymerase to break down and recycle plastic bottles 期刊论文
NATURE, 2020, 580 (7802) : 216-+
作者:  Zhao, Evan Wenbo;  Liu, Tao;  Jonsson, Erlendur;  Lee, Jeongjae;  Temprano, Israel;  Jethwa, Rajesh B.;  Wang, Anqi;  Smith, Holly;  Carretero-Gonzalez, Javier;  Song, Qilei;  Grey, Clare P.
收藏  |  浏览/下载:86/0  |  提交时间:2020/07/03

Present estimates suggest that of the 359 million tons of plastics produced annually worldwide(1), 150-200 million tons accumulate in landfill or in the natural environment(2). Poly(ethylene terephthalate) (PET) is the most abundant polyester plastic, with almost 70 million tons manufactured annually worldwide for use in textiles and packaging(3). The main recycling process for PET, via thermomechanical means, results in a loss of mechanical properties(4). Consequently, de novo synthesis is preferred and PET waste continues to accumulate. With a high ratio of aromatic terephthalate units-which reduce chain mobility-PET is a polyester that is extremely difficult to hydrolyse(5). Several PET hydrolase enzymes have been reported, but show limited productivity(6,7). Here we describe an improved PET hydrolase that ultimately achieves, over 10 hours, a minimum of 90 per cent PET depolymerization into monomers, with a productivity of 16.7 grams of terephthalate per litre per hour (200 grams per kilogram of PET suspension, with an enzyme concentration of 3 milligrams per gram of PET). This highly efficient, optimized enzyme outperforms all PET hydrolases reported so far, including an enzyme(8,9) from the bacterium Ideonella sakaiensis strain 201-F6 (even assisted by a secondary enzyme(10)) and related improved variants(11-14) that have attracted recent interest. We also show that biologically recycled PET exhibiting the same properties as petrochemical PET can be produced from enzymatically depolymerized PET waste, before being processed into bottles, thereby contributing towards the concept of a circular PET economy.


Computer-aided engineering produces improvements to an enzyme that breaks down poly(ethylene terephthalate) (PET) into its constituent monomers, which are used to synthesize PET of near-petrochemical grade that can be further processed into bottles.


  
Estimating and tracking the remaining carbon budget for stringent climate targets (vol 571, pg 335, 2019) 期刊论文
NATURE, 2020, 580 (7802) : E4-E4
作者:  Zhao, Evan Wenbo;  Liu, Tao;  Jonsson, Erlendur;  Lee, Jeongjae;  Temprano, Israel;  Jethwa, Rajesh B.;  Wang, Anqi;  Smith, Holly;  Carretero-Gonzalez, Javier;  Song, Qilei;  Grey, Clare P.
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/03

An amendment to this paper has been published and can be accessed via a link at the top of the paper.


  
Global patterns of terrestrial nitrogen and phosphorus limitation 期刊论文
NATURE GEOSCIENCE, 2020, 13 (3) : 221-+
作者:  Du, Enzai;  Terrer, Cesar;  Pellegrini, Adam F. A.;  Ahlstrom, Anders;  van Lissa, Caspar J.;  Zhao, Xia;  Xia, Nan;  Wu, Xinhui;  Jackson, Robert B.
收藏  |  浏览/下载:10/0  |  提交时间:2020/05/13
Investigating size-segregated sources of elemental composition of particulate matter in the South China Sea during the 2011 Vasco cruise 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (3) : 1255-1276
作者:  Hilario, Miguel Ricardo A.;  Cruz, Melliza T.;  Cambaliza, Maria Obiminda L.;  Reid, Jeffrey S.;  Xian, Peng;  Simpas, James B.;  Lagrosas, Nofel D.;  Uy, Sherdon Nino Y.;  Cliff, Steve;  Zhao, Yongjing
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/02
The molecular basis for sugar import in malaria parasites 期刊论文
NATURE, 2020, 578 (7794) : 321-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:16/0  |  提交时间:2020/07/03

Elucidating the mechanism of sugar import requires a molecular understanding of how transporters couple sugar binding and gating events. Whereas mammalian glucose transporters (GLUTs) are specialists(1), the hexose transporter from the malaria parasite Plasmodium falciparum PfHT1(2,3) has acquired the ability to transport both glucose and fructose sugars as efficiently as the dedicated glucose (GLUT3) and fructose (GLUT5) transporters. Here, to establish the molecular basis of sugar promiscuity in malaria parasites, we determined the crystal structure of PfHT1 in complex with d-glucose at a resolution of 3.6 angstrom. We found that the sugar-binding site in PfHT1 is very similar to those of the distantly related GLUT3 and GLUT5 structures(4,5). Nevertheless, engineered PfHT1 mutations made to match GLUT sugar-binding sites did not shift sugar preferences. The extracellular substrate-gating helix TM7b in PfHT1 was positioned in a fully occluded conformation, providing a unique glimpse into how sugar binding and gating are coupled. We determined that polar contacts between TM7b and TM1 (located about 15 angstrom from d-glucose) are just as critical for transport as the residues that directly coordinate d-glucose, which demonstrates a strong allosteric coupling between sugar binding and gating. We conclude that PfHT1 has achieved substrate promiscuity not by modifying its sugar-binding site, but instead by evolving substrate-gating dynamics.


Crystal structure of the Plasmodium falciparum hexose transporter PfHT1 reveals the molecular basis of its ability to transport multiple types of sugar as efficiently as the dedicated mammalian glucose and fructose transporters.


  
Processive extrusion of polypeptide loops by a Hsp100 disaggregase 期刊论文
NATURE, 2020, 578 (7794) : 317-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:16/0  |  提交时间:2020/07/03

The ability to reverse protein aggregation is vital to cells(1,2). Hsp100 disaggregases such as ClpB and Hsp104 are proposed to catalyse this reaction by translocating polypeptide loops through their central pore(3,4). This model of disaggregation is appealing, as it could explain how polypeptides entangled within aggregates can be extracted and subsequently refolded with the assistance of Hsp70(4,5). However, the model is also controversial, as the necessary motor activity has not been identified(6-8) and recent findings indicate non-processive mechanisms such as entropic pulling or Brownian ratcheting(9,10). How loop formation would be accomplished is also obscure. Indeed, cryo-electron microscopy studies consistently show single polypeptide strands in the Hsp100 pore(11,12). Here, by following individual ClpB-substrate complexes in real time, we unambiguously demonstrate processive translocation of looped polypeptides. We integrate optical tweezers with fluorescent-particle tracking to show that ClpB translocates both arms of the loop simultaneously and switches to single-arm translocation when encountering obstacles. ClpB is notably powerful and rapid  it exerts forces of more than 50 pN at speeds of more than 500 residues per second in bursts of up to 28 residues. Remarkably, substrates refold while exiting the pore, analogous to co-translational folding. Our findings have implications for protein-processing phenomena including ubiquitin-mediated remodelling by Cdc48 (or its mammalian orthologue p97)(13) and degradation by the 26S proteasome(14).


A combination of optical tweezers and fluorescent-particle tracking is used to dissect the dynamics of the Hsp100 disaggregase ClpB, and show that the processive extrusion of polypeptide loops is the mechanistic basis of its activity.