GSTDTAP

浏览/检索结果: 共50条,第1-10条 帮助

限定条件                    
已选(0)清除 条数/页:   排序方式:
Single-chain heteropolymers transport protons selectively and rapidly 期刊论文
NATURE, 2020, 577 (7789) : 216-+
作者:  Jiang, Tao;  Hall, Aaron;  Eres, Marco;  Hemmatian, Zahra;  Qiao, Baofu;  Zhou, Yun;  Ruan, Zhiyuan;  Couse, Andrew D.;  Heller, William T.;  Huang, Haiyan;  de la Cruz, Monica Olvera;  Rolandi, Marco;  Xu, Ting
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/03

Precise protein sequencing and folding are believed to generate the structure and chemical diversity of natural channels(1,2), both of which are essential to synthetically achieve proton transport performance comparable to that seen in natural systems. Geometrically defined channels have been fabricated using peptides, DNAs, carbon nanotubes, sequence-defined polymers and organic frameworks(3-13). However, none of these channels rivals the performance observed in their natural counterparts. Here we show that without forming an atomically structured channel, four-monomer-based random heteropolymers (RHPs)(14) can mimic membrane proteins and exhibit selective proton transport across lipid bilayers at a rate similar to those of natural proton channels. Statistical control over the monomer distribution in an RHP leads to segmental heterogeneity in hydrophobicity, which facilitates the insertion of single RHPs into the lipid bilayers. It also results in bilayer-spanning segments containing polar monomers that promote the formation of hydrogen-bonded chains(15,16) for proton transport. Our study demonstrates the importance of the adaptability that is enabled by statistical similarity among RHP chains and of the modularity provided by the chemical diversity of monomers, to achieve uniform behaviour in heterogeneous systems. Our results also validate statistical randomness as an unexplored approach to realize protein-like behaviour at the single-polymer-chain level in a predictable manner.


  
Structural transitions in influenza haemagglutinin at membrane fusion pH 期刊论文
NATURE, 2020, 583 (7814) : 150-+
作者:  Wei, Kevin;  Korsunsky, Ilya;  Marshall, Jennifer L.;  Gao, Anqi;  Watts, Gerald F. M.;  Major, Triin;  Croft, Adam P.;  Watts, Jordan;  Blazar, Philip E.;  Lange, Jeffrey K.;  Thornhill, Thomas S.;  Filer, Andrew;  Raza, Karim;  Donlin, Laura T.;  Siebel, Christian W.
收藏  |  浏览/下载:20/0  |  提交时间:2020/07/03

Cryo-electron microscopy studies of the influenza haemagglutinin glycoprotein at the low pH of host endosomes reveals structural intermediates, offering a dynamic view of how the protein mediates membrane fusion.


Infection by enveloped viruses involves fusion of their lipid envelopes with cellular membranes to release the viral genome into cells. For HIV, Ebola, influenza and numerous other viruses, envelope glycoproteins bind the infecting virion to cell-surface receptors and mediate membrane fusion. In the case of influenza, the receptor-binding glycoprotein is the haemagglutinin (HA), and following receptor-mediated uptake of the bound virus by endocytosis(1), it is the HA that mediates fusion of the virus envelope with the membrane of the endosome(2). Each subunit of the trimeric HA consists of two disulfide-linked polypeptides, HA1 and HA2. The larger, virus-membrane-distal, HA1 mediates receptor binding  the smaller, membrane-proximal, HA2 anchors HA in the envelope and contains the fusion peptide, a region that is directly involved in membrane interaction(3). The low pH of endosomes activates fusion by facilitating irreversible conformational changes in the glycoprotein. The structures of the initial HA at neutral pH and the final HA at fusion pH have been investigated by electron microscopy(4,5) and X-ray crystallography(6-8). Here, to further study the process of fusion, we incubate HA for different times at pH 5.0 and directly image structural changes using single-particle cryo-electron microscopy. We describe three distinct, previously undescribed forms of HA, most notably a 150 angstrom-long triple-helical coil of HA2, which may bridge between the viral and endosomal membranes. Comparison of these structures reveals concerted conformational rearrangements through which the HA mediates membrane fusion.


  
A Particle-Based Conditional Sampling Scheme for the Simulation of Transport in Fractured Rock With Diffusion Into Stagnant Water and Rock Matrix 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (4)
作者:  Trinchero, Paolo;  Painter, Scott L.;  Poteri, Antti;  Sanglas, Jordi;  Cvetkovic, Vladimir;  Selroos, Jan-Olof
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/02
fractured media  diffusion into stagnant water  time domain particle tracking  retention time distribution  
Ionic solids from common colloids 期刊论文
NATURE, 2020, 580 (7804) : 487-+
作者:  Delord, T.;  Huillery, P.;  Nicolas, L.;  Hetet, G.
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/03

Oppositely charged colloidal particles are assembled in water through an approach that allows electrostatic interactions to be precisely tuned to generate macroscopic single crystals.


From rock salt to nanoparticle superlattices, complex structure can emerge from simple building blocks that attract each other through Coulombic forces(1-4). On the micrometre scale, however, colloids in water defy the intuitively simple idea of forming crystals from oppositely charged partners, instead forming non-equilibrium structures such as clusters and gels(5-7). Although various systems have been engineered to grow binary crystals(8-11), native surface charge in aqueous conditions has not been used to assemble crystalline materials. Here we form ionic colloidal crystals in water through an approach that we refer to as polymer-attenuated Coulombic self-assembly. The key to crystallization is the use of a neutral polymer to keep particles separated by well defined distances, allowing us to tune the attractive overlap of electrical double layers, directing particles to disperse, crystallize or become permanently fixed on demand. The nucleation and growth of macroscopic single crystals is demonstrated by using the Debye screening length to fine-tune assembly. Using a variety of colloidal particles and commercial polymers, ionic colloidal crystals isostructural to caesium chloride, sodium chloride, aluminium diboride and K4C60 are selected according to particle size ratios. Once fixed by simply diluting out solution salts, crystals are pulled out of the water for further manipulation, demonstrating an accurate translation from solution-phase assembly to dried solid structures. In contrast to other assembly approaches, in which particles must be carefully engineered to encode binding information(12-18), polymer-attenuated Coulombic self-assembly enables conventional colloids to be used as model colloidal ions, primed for crystallization.


  
Processive extrusion of polypeptide loops by a Hsp100 disaggregase 期刊论文
NATURE, 2020, 578 (7794) : 317-+
作者:  Zhao, Peishen;  Liang, Yi-Lynn;  Belousoff, Matthew J.;  Deganutti, Giuseppe;  Fletcher, Madeleine M.;  Willard, Francis S.;  Bell, Michael G.;  Christe, Michael E.;  Sloop, Kyle W.;  Inoue, Asuka;  Truong, Tin T.;  Clydesdale, Lachlan;  Furness, Sebastian G. B.;  Christopoulos, Arthur;  Wang, Ming-Wei;  Miller, Laurence J.;  Reynolds, Christopher A.;  Danev, Radostin;  Sexton, Patrick M.;  Wootten, Denise
收藏  |  浏览/下载:16/0  |  提交时间:2020/07/03

The ability to reverse protein aggregation is vital to cells(1,2). Hsp100 disaggregases such as ClpB and Hsp104 are proposed to catalyse this reaction by translocating polypeptide loops through their central pore(3,4). This model of disaggregation is appealing, as it could explain how polypeptides entangled within aggregates can be extracted and subsequently refolded with the assistance of Hsp70(4,5). However, the model is also controversial, as the necessary motor activity has not been identified(6-8) and recent findings indicate non-processive mechanisms such as entropic pulling or Brownian ratcheting(9,10). How loop formation would be accomplished is also obscure. Indeed, cryo-electron microscopy studies consistently show single polypeptide strands in the Hsp100 pore(11,12). Here, by following individual ClpB-substrate complexes in real time, we unambiguously demonstrate processive translocation of looped polypeptides. We integrate optical tweezers with fluorescent-particle tracking to show that ClpB translocates both arms of the loop simultaneously and switches to single-arm translocation when encountering obstacles. ClpB is notably powerful and rapid  it exerts forces of more than 50 pN at speeds of more than 500 residues per second in bursts of up to 28 residues. Remarkably, substrates refold while exiting the pore, analogous to co-translational folding. Our findings have implications for protein-processing phenomena including ubiquitin-mediated remodelling by Cdc48 (or its mammalian orthologue p97)(13) and degradation by the 26S proteasome(14).


A combination of optical tweezers and fluorescent-particle tracking is used to dissect the dynamics of the Hsp100 disaggregase ClpB, and show that the processive extrusion of polypeptide loops is the mechanistic basis of its activity.


  
Threshold of Motion Conditions Under Stokes Flow Regime and Comparison With Turbulent Flow Data 期刊论文
WATER RESOURCES RESEARCH, 2019, 55 (12) : 10872-10892
作者:  Shih, WuRong;  Diplas, Panayiotis
收藏  |  浏览/下载:5/0  |  提交时间:2020/02/16
Global and local flow properties  Bed microstructure  Effective shear ratio  The Shields diagram  Single grain entrainment  Channel bed mobility  
The Role of Stabilizer Concentration in the Mobility of Carbon-Supported Nanozerovalent Iron (nZVI) in Fractured Media 期刊论文
WATER RESOURCES RESEARCH, 2019
作者:  Cohen, Meirav;  Yakirevich, Alexander;  Weisbrod, Noam
收藏  |  浏览/下载:4/0  |  提交时间:2019/11/27
nZVI  colloid transport  stabilizer loading  CMC  fractured media  groundwater remediation  
Active site rearrangement and structural divergence in prokaryotic respiratory oxidases 期刊论文
SCIENCE, 2019, 366 (6461) : 100-+
作者:  Safarian, S.;  Hahn, A.;  Mills, D. J.;  Radloff, M.;  Eisinger, M. L.;  Nikolaev, A.;  Meier-Credo, J.;  Melin, F.;  Miyoshi, H.;  Gennis, R. B.;  Sakamoto, J.;  Langer, J. D.;  Hellwig, P.;  Kuehlbrandt, W.;  Michel, H.
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
Unraveling the origin of chirality from plasmonic nanoparticle-protein complexes 期刊论文
SCIENCE, 2019, 365 (6460) : 1475-+
作者:  Zhang, Qingfeng;  Hernandez, Taylor;  Smith, Kyle W.;  Jebeli, Seyyed Ali Hosseini;  Dai, Alan X.;  Warning, Lauren;  Baiyasi, Rashad;  McCarthy, Lauren A.;  Guo, Hua;  Chen, Dong-Hua;  Dionne, Jennifer A.;  Landes, Christy F.;  Link, Stephan
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries 期刊论文
NATURE COMMUNICATIONS, 2018, 9
作者:  Zekavat, Seyedeh M.;  Ruotsalainen, Sanni;  Handsaker, Robert E.;  Alver, Maris;  Bloom, Jonathan;  Poterba, Timothy;  Seed, Cotton;  Ernst, Jason;  Chaffin, Mark;  Engreitz, Jesse;  Peloso, Gina M.;  Manichaikul, Ani;  Yang, Chaojie;  Ryan, Kathleen A.;  Fu, Mao;  Johnson, W. Craig;  Tsai, Michael;  Budoff, Matthew;  Ramachandran, Vasan S.;  Cupples, L. Adrienne;  Rotter, Jerome I.;  Rich, Stephen S.;  Post, Wendy;  Mitchell, Braxton D.;  Correa, Adolfo;  Metspalu, Andres;  Wilson, James G.;  Salomaa, Veikko;  Kellis, Manolis;  Daly, Mark J.;  Neale, Benjamin M.;  McCarroll, Steven;  Surakka, Ida;  Esko, Tonu;  Ganna, Andrea;  Ripatti, Samuli;  Kathiresan, Sekar;  Natarajan, Pradeep
收藏  |  浏览/下载:24/0  |  提交时间:2019/11/27