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Leaf senescence exhibits stronger climatic responses during warm than during cold autumns 期刊论文
NATURE CLIMATE CHANGE, 2020
作者:  Chen, Lei;  Hanninen, Heikki;  Rossi, Sergio;  Smith, Nicholas G.;  Pau, Stephanie;  Liu, Zhiyong;  Feng, Guanqiao;  Gao, Jie;  Liu, Jianquan
收藏  |  浏览/下载:11/0  |  提交时间:2020/07/09
Progressive nitrogen limitation across the Tibetan alpine permafrost region 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Kou, Dan;  Yang, Guibiao;  Li, Fei;  Feng, Xuehui;  Zhang, Dianye;  Mao, Chao;  Zhang, Qiwen;  Peng, Yunfeng;  Ji, Chengjun;  Zhu, Qiuan;  Fang, Yunting;  Liu, Xueyan;  Xu-Ri;  Li, Siqi;  Deng, Jia;  Zheng, Xunhua;  Fang, Jingyun;  Yang, Yuanhe
收藏  |  浏览/下载:18/0  |  提交时间:2020/07/06
Plant hydraulics accentuates the effect of atmospheric moisture stress on transpiration 期刊论文
NATURE CLIMATE CHANGE, 2020, 10 (7) : 691-+
作者:  Liu, Yanlan;  Kumar, Mukesh;  Katul, Gabriel G.;  Feng, Xue;  Konings, Alexandra G.
收藏  |  浏览/下载:15/0  |  提交时间:2020/06/09
The water lily genome and the early evolution of flowering plants 期刊论文
NATURE, 2020, 577 (7788) : 79-+
作者:  Zhang, Liangsheng;  Chen, Fei;  Zhang, Xingtan;  Li, Zhen;  Zhao, Yiyong;  Lohaus, Rolf;  Chang, Xiaojun;  Dong, Wei;  Ho, Simon Y. W.;  Liu, Xing;  Song, Aixia;  Chen, Junhao;  Guo, Wenlei;  Wang, Zhengjia;  Zhuang, Yingyu;  Wang, Haifeng;  Chen, Xuequn;  Hu, Juan;  Liu, Yanhui;  Qin, Yuan;  Wang, Kai;  Dong, Shanshan;  Liu, Yang;  Zhang, Shouzhou;  Yu, Xianxian;  Wu, Qian;  Wang, Liangsheng;  Yan, Xueqing;  Jiao, Yuannian;  Kong, Hongzhi;  Zhou, Xiaofan;  Yu, Cuiwei;  Chen, Yuchu;  Li, Fan;  Wang, Jihua;  Chen, Wei;  Chen, Xinlu;  Jia, Qidong;  Zhang, Chi;  Jiang, Yifan;  Zhang, Wanbo;  Liu, Guanhua;  Fu, Jianyu;  Chen, Feng;  Ma, Hong;  Van de Peer, Yves;  Tang, Haibao
收藏  |  浏览/下载:12/0  |  提交时间:2020/07/03

Water lilies belong to the angiosperm order Nymphaeales. Amborellales, Nymphaeales and Austrobaileyales together form the so-called ANA-grade of angiosperms, which are extant representatives of lineages that diverged the earliest from the lineage leading to the extant mesangiosperms(1-3). Here we report the 409-megabase genome sequence of the blue-petal water lily (Nymphaea colorata). Our phylogenomic analyses support Amborellales and Nymphaeales as successive sister lineages to all other extant angiosperms. The N. colorata genome and 19 other water lily transcriptomes reveal a Nymphaealean whole-genome duplication event, which is shared by Nymphaeaceae and possibly Cabombaceae. Among the genes retained from this whole-genome duplication are homologues of genes that regulate flowering transition and flower development. The broad expression of homologues of floral ABCE genes in N. colorata might support a similarly broadly active ancestral ABCE model of floral organ determination in early angiosperms. Water lilies have evolved attractive floral scents and colours, which are features shared with mesangiosperms, and we identified their putative biosynthetic genes in N. colorata. The chemical compounds and biosynthetic genes behind floral scents suggest that they have evolved in parallel to those in mesangiosperms. Because of its unique phylogenetic position, the N. colorata genome sheds light on the early evolution of angiosperms.


  
A map of object space in primate inferotemporal cortex 期刊论文
NATURE, 2020, 583 (7814) : 103-+
作者:  Wu, Huihui;  Li, Bosheng;  Iwakawa, Hiro-oki;  Pan, Yajie;  Tang, Xianli;  Ling-hu, Qianyan;  Liu, Yuelin;  Sheng, Shixin;  Feng, Li;  Zhang, Hong;  Zhang, Xinyan;  Tang, Zhonghua;  Xia, Xinli;  Zhai, Jixian;  Guo, Hongwei
收藏  |  浏览/下载:47/0  |  提交时间:2020/07/03

Primate inferotemporal cortex contains a coarse map of object space consisting of four networks, identified using functional imaging, electrophysiology and deep networks.


The inferotemporal (IT) cortex is responsible for object recognition, but it is unclear how the representation of visual objects is organized in this part of the brain. Areas that are selective for categories such as faces, bodies, and scenes have been found(1-5), but large parts of IT cortex lack any known specialization, raising the question of what general principle governs IT organization. Here we used functional MRI, microstimulation, electrophysiology, and deep networks to investigate the organization of macaque IT cortex. We built a low-dimensional object space to describe general objects using a feedforward deep neural network trained on object classification(6). Responses of IT cells to a large set of objects revealed that single IT cells project incoming objects onto specific axes of this space. Anatomically, cells were clustered into four networks according to the first two components of their preferred axes, forming a map of object space. This map was repeated across three hierarchical stages of increasing view invariance, and cells that comprised these maps collectively harboured sufficient coding capacity to approximately reconstruct objects. These results provide a unified picture of IT organization in which category-selective regions are part of a coarse map of object space whose dimensions can be extracted from a deep network.


  
The wide-binary origin of (2014) MU69-like Kuiper belt contact binaries (vol 31, pg 878, 2020) 期刊论文
NATURE, 2020, 582 (7811) : E2-E2
作者:  Wu, Huihui;  Li, Bosheng;  Iwakawa, Hiro-oki;  Pan, Yajie;  Tang, Xianli;  Ling-hu, Qianyan;  Liu, Yuelin;  Sheng, Shixin;  Feng, Li;  Zhang, Hong;  Zhang, Xinyan;  Tang, Zhonghua;  Xia, Xinli;  Zhai, Jixian;  Guo, Hongwei
收藏  |  浏览/下载:11/0  |  提交时间:2020/07/03
REPLY TO ZHANG ET AL.: Using long-term all-available Landsat data to study water bodies over large areas represents a paradigm shift 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (12) : 6310-6311
作者:  Feng, Shuailong;  Liu, Shuguang;  Huang, Zhihong;  Jing, Lei;  Zhao, Meifang;  Peng, Xi;  Yan, Wende;  Wu, Yiping;  Lv, Yihe;  Smith, Andrew R.;  McDonald, Morag A.;  Patil, Sopan D.;  Sarkissian, Arbi J.;  Shi, Zhihua;  Xia, Jun;  Ogbodo, U. S.
收藏  |  浏览/下载:10/0  |  提交时间:2020/05/13
Integrating genomic features for non-invasive early lung cancer detection 期刊论文
NATURE, 2020, 580 (7802) : 245-+
作者:  Wang, Qinyang;  Wang, Yupeng;  Ding, Jingjin;  Wang, Chunhong;  Zhou, Xuehan;  Gao, Wenqing;  Huang, Huanwei;  Shao, Feng;  Liu, Zhibo
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

Circulating tumour DNA in blood is analysed to identify genomic features that distinguish early-stage lung cancer patients from risk-matched controls, and these are integrated into a machine-learning method for blood-based lung cancer screening.


Radiologic screening of high-risk adults reduces lung-cancer-related mortality(1,2)  however, a small minority of eligible individuals undergo such screening in the United States(3,4). The availability of blood-based tests could increase screening uptake. Here we introduce improvements to cancer personalized profiling by deep sequencing (CAPP-Seq)(5), a method for the analysis of circulating tumour DNA (ctDNA), to better facilitate screening applications. We show that, although levels are very low in early-stage lung cancers, ctDNA is present prior to treatment in most patients and its presence is strongly prognostic. We also find that the majority of somatic mutations in the cell-free DNA (cfDNA) of patients with lung cancer and of risk-matched controls reflect clonal haematopoiesis and are non-recurrent. Compared with tumour-derived mutations, clonal haematopoiesis mutations occur on longer cfDNA fragments and lack mutational signatures that are associated with tobacco smoking. Integrating these findings with other molecular features, we develop and prospectively validate a machine-learning method termed '  lung cancer likelihood in plasma'  (Lung-CLiP), which can robustly discriminate early-stage lung cancer patients from risk-matched controls. This approach achieves performance similar to that of tumour-informed ctDNA detection and enables tuning of assay specificity in order to facilitate distinct clinical applications. Our findings establish the potential of cfDNA for lung cancer screening and highlight the importance of risk-matching cases and controls in cfDNA-based screening studies.


  
Evidence of metasomatism in the interior of Vesta 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Zhang, Ai-Cheng;  Kawasaki, Noriyuki;  Bao, Huiming;  Liu, Jia;  Qin, Liping;  Kuroda, Minami;  Gao, Jian-Feng;  Chen, Li-Hui;  He, Ye;  Sakamoto, Naoya;  Yurimoto, Hisayoshi
收藏  |  浏览/下载:8/0  |  提交时间:2020/05/13
A chemically triggered transition from conflict to cooperation in burying beetles 期刊论文
ECOLOGY LETTERS, 2020, 23 (3) : 467-475
作者:  Chen, Bo-Fei;  Liu, Mark;  Rubenstein, Dustin R.;  Sun, Syuan-Jyun;  Liu, Jian-Nan;  Lin, Yu-Heng;  Shen, Sheng-Feng
收藏  |  浏览/下载:12/0  |  提交时间:2020/07/02
conflict  cooperation  social behaviour  sociality