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Anthropogenic stressors impact fish sensory development and survival via thyroid disruption 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Besson, Marc;  Feeney, William E.;  Moniz, Isadora;  Francois, Loic;  Brooker, Rohan M.;  Holzer, Guillaume;  Metian, Marc;  Roux, Natacha;  Laudet, Vincent;  Lecchini, David
收藏  |  浏览/下载:17/0  |  提交时间:2020/07/21
Substrate regulation leads to differential responses of microbial ammonia-oxidizing communities to ocean warming 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Zheng, Zhen-Zhen;  Zheng, Li-Wei;  Xu, Min Nina;  Tan, Ehui;  Hutchins, David A.;  Deng, Wenchao;  Zhang, Yao;  Shi, Dalin;  Dai, Minhan;  Kao, Shuh-Ji
收藏  |  浏览/下载:12/0  |  提交时间:2020/07/21
Atmospheric transport is a major pathway of microplastics to remote regions 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Evangeliou, N.;  Grythe, H.;  Klimont, Z.;  Heyes, C.;  Eckhardt, S.;  Lopez-Aparicio, S.;  Stohl, A.
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/21
Gainers and losers of surface and terrestrial water resources in China during 1989-2016 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Wang, Xinxin;  Xiao, Xiangming;  Zou, Zhenhua;  Dong, Jinwei;  Qin, Yuanwei;  Doughty, Russell B.;  Menarguez, Michael A.;  Chen, Bangqian;  Wang, Junbang;  Ye, Hui;  Ma, Jun;  Zhong, Qiaoyan;  Zhao, Bin;  Li, Bo
收藏  |  浏览/下载:26/0  |  提交时间:2020/07/14
Increasing trends in regional heatwaves 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Perkins-Kirkpatrick, S. E.;  Lewis, S. C.
收藏  |  浏览/下载:4/0  |  提交时间:2020/07/06
Extreme climate after massive eruption of Alaska's Okmok volcano in 43 BCE and effects on the late Roman Republic and Ptolemaic Kingdom 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (27) : 15443-15449
作者:  McConnell, Joseph R.;  Sigl, Michael;  Plunkett, Gill;  Burke, Andrea;  Kim, Woon Mi;  Raible, Christoph C.;  Wilson, Andrew, I;  Manning, Joseph G.;  Ludlow, Francis;  Chellman, Nathan J.;  Innes, Helen M.;  Yang, Zhen;  Larsen, Jessica F.;  Schaefer, Janet R.;  Kipfstuhl, Sepp;  Mojtabavi, Seyedhamidreza;  Wilhelms, Frank;  Opel, Thomas;  Meyer, Hanno;  Steffensen, Jorgen Peder
收藏  |  浏览/下载:17/0  |  提交时间:2020/06/29
ice core  volcano  Okmok  Rome  climate forcing  
Meta-analysis of the impacts of global change factors on soil microbial diversity and functionality 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Zhou, Zhenghu;  Wang, Chuankuan;  Luo, Yiqi
收藏  |  浏览/下载:10/0  |  提交时间:2020/06/22
Structural basis of DNA targeting by a transposon-encoded CRISPR-Cas system 期刊论文
NATURE, 2020, 577 (7789) : 271-+
作者:  Halpin-Healy, Tyler S.;  Klompe, Sanne E.;  Sternberg, Samuel H.;  Fernandez, Israel S.
收藏  |  浏览/下载:5/0  |  提交时间:2020/07/03

Bacteria use adaptive immune systems encoded by CRISPR and Cas genes to maintain genomic integrity when challenged by pathogens and mobile genetic elements(1-3). Type I CRISPR-Cas systems typically target foreign DNA for degradation via joint action of the ribonucleoprotein complex Cascade and the helicase-nuclease Cas3(4,5), but nuclease-deficient type I systems lacking Cas3 have been repurposed for RNA-guided transposition by bacterial Tn7-like transposons(6,7). How CRISPR- and transposon-associated machineries collaborate during DNA targeting and insertion remains unknown. Here we describe structures of a TniQ-Cascade complex encoded by the Vibrio cholerae Tn6677 transposon using cryo-electron microscopy, revealing the mechanistic basis of this functional coupling. The cryo-electron microscopy maps enabled de novo modelling and refinement of the transposition protein TniQ, which binds to the Cascade complex as a dimer in a head-to-tail configuration, at the interface formed by Cas6 and Cas7 near the 3'  end of the CRISPR RNA (crRNA). The natural Cas8-Cas5 fusion protein binds the 5'  crRNA handle and contacts the TniQ dimer via a flexible insertion domain. A target DNA-bound structure reveals critical interactions necessary for protospacer-adjacent motif recognition and R-loop formation. This work lays the foundation for a structural understanding of how DNA targeting by TniQ-Cascade leads to downstream recruitment of additional transposase proteins, and will guide protein engineering efforts to leverage this system for programmable DNA insertions in genome-engineering applications.


  
Clonally expanded CD8 T cells patrol the cerebrospinal fluid in Alzheimer's disease 期刊论文
NATURE, 2020, 577 (7790) : 399-+
作者:  Gate, David;  Saligrama, Naresha;  Leventhal, Olivia;  Yang, Andrew C.;  Unger, Michael S.;  Middeldorp, Jinte;  Chen, Kelly;  Lehallier, Benoit;  Channappa, Divya;  De Los Santos, Mark B.;  McBride, Alisha;  Pluvinage, John;  Elahi, Fanny;  Tam, Grace Kyin-Ye;  Kim, Yongha;  Greicius, Michael;  Wagner, Anthony D.;  Aigner, Ludwig;  Galasko, Douglas R.;  Davis, Mark M.;  Wyss-Coray, Tony
收藏  |  浏览/下载:6/0  |  提交时间:2020/07/03

Alzheimer'  s disease is an incurable neurodegenerative disorder in which neuroinflammation has a critical function(1). However, little is known about the contribution of the adaptive immune response in Alzheimer'  s disease(2). Here, using integrated analyses of multiple cohorts, we identify peripheral and central adaptive immune changes in Alzheimer'  s disease. First, we performed mass cytometry of peripheral blood mononuclear cells and discovered an immune signature of Alzheimer'  s disease that consists of increased numbers of CD8(+) T effector memory CD45RA(+) (T-EMRA) cells. In a second cohort, we found that CD8(+) T-EMRA cells were negatively associated with cognition. Furthermore, single-cell RNA sequencing revealed that T cell receptor (TCR) signalling was enhanced in these cells. Notably, by using several strategies of single-cell TCR sequencing in a third cohort, we discovered clonally expanded CD8(+) T-EMRA cells in the cerebrospinal fluid of patients with Alzheimer'  s disease. Finally, we used machine learning, cloning and peptide screens to demonstrate the specificity of clonally expanded TCRs in the cerebrospinal fluid of patients with Alzheimer'  s disease to two separate Epstein-Barr virus antigens. These results reveal an adaptive immune response in the blood and cerebrospinal fluid in Alzheimer'  s disease and provide evidence of clonal, antigen-experienced T cells patrolling the intrathecal space of brains affected by age-related neurodegeneration.


  
Search and rescue at sea aided by hidden flow structures 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Serra, Mattia;  Sathe, Pratik;  Rypina, Irina;  Kirincich, Anthony;  Ross, Shane D.;  Lermusiaux, Pierre;  Allen, Arthur;  Peacock, Thomas;  Haller, George
收藏  |  浏览/下载:5/0  |  提交时间:2020/06/01