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Taking stock of national climate policies to evaluate implementation of the Paris Agreement 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Roelfsema, Mark;  van Soest, Heleen L.;  Harmsen, Mathijs;  van Vuuren, Detlef P.;  Bertram, Christoph;  den Elzen, Michel;  Hoehne, Niklas;  Iacobuta, Gabriela;  Krey, Volker;  Kriegler, Elmar;  Luderer, Gunnar;  Riahi, Keywan;  Ueckerdt, Falko;  Despres, Jacques;  Drouet, Laurent;  Emmerling, Johannes;  Frank, Stefan;  Fricko, Oliver;  Gidden, Matthew;  Humpenoeder, Florian;  Huppmann, Daniel;  Fujimori, Shinichiro;  Fragkiadakis, Kostas;  Gi, Keii;  Keramidas, Kimon;  Koberle, Alexandre C.;  Reis, Lara Aleluia;  Rochedo, Pedro;  Schaeffer, Roberto;  Oshiro, Ken;  Vrontisi, Zoi;  Chen, Wenying;  Iyer, Gokul C.;  Edmonds, Jae;  Kannavou, Maria;  Jiang, Kejun;  Mathur, Ritu;  Safonoy, George;  Vishwanathan, Saritha Sudharmma
收藏  |  浏览/下载:20/0  |  提交时间:2020/05/13
The costs of achieving climate targets and the sources of uncertainty 期刊论文
NATURE CLIMATE CHANGE, 2020, 10 (4) : 329-+
作者:  van Vuuren, D. P.;  van der Wijst, Kaj-Ivar;  Marsman, Stijn;  van den Berg, Maarten;  Hof, Andries F.;  Jones, Chris D.
收藏  |  浏览/下载:10/0  |  提交时间:2020/05/13
A plant genetic network for preventing dysbiosis in the phyllosphere 期刊论文
NATURE, 2020, 580 (7805) : 653-+
作者:  van den Brink, Susanne C.;  Alemany, Anna;  van Batenburg, Vincent;  Moris, Naomi;  Blotenburg, Marloes;  Vivie, Judith;  Baillie-Johnson, Peter;  Nichols, Jennifer;  Sonnen, Katharina F.;  Martinez Arias, Alfonso;  van Oudenaarden, Alexander
收藏  |  浏览/下载:59/0  |  提交时间:2020/07/03

Mutations in genes involved in immune signalling and vesicle trafficking cause defects in the leaf microbiome of Arabidopsis thaliana that result in damage to leaf tissues, suggesting mechanisms by which terrestrial plants control the level and diversity of endophytic phyllosphere microbiota.


The aboveground parts of terrestrial plants, collectively called the phyllosphere, have a key role in the global balance of atmospheric carbon dioxide and oxygen. The phyllosphere represents one of the most abundant habitats for microbiota colonization. Whether and how plants control phyllosphere microbiota to ensure plant health is not well understood. Here we show that the Arabidopsis quadruple mutant (min7 fls2 efr cerk1  hereafter, mfec)(1), simultaneously defective in pattern-triggered immunity and the MIN7 vesicle-trafficking pathway, or a constitutively activated cell death1 (cad1) mutant, carrying a S205F mutation in a membrane-attack-complex/perforin (MACPF)-domain protein, harbour altered endophytic phyllosphere microbiota and display leaf-tissue damage associated with dysbiosis. The Shannon diversity index and the relative abundance of Firmicutes were markedly reduced, whereas Proteobacteria were enriched in the mfec and cad1(S205F) mutants, bearing cross-kingdom resemblance to some aspects of the dysbiosis that occurs in human inflammatory bowel disease. Bacterial community transplantation experiments demonstrated a causal role of a properly assembled leaf bacterial community in phyllosphere health. Pattern-triggered immune signalling, MIN7 and CAD1 are found in major land plant lineages and are probably key components of a genetic network through which terrestrial plants control the level and nurture the diversity of endophytic phyllosphere microbiota for survival and health in a microorganism-rich environment.


  
Performance-limiting nanoscale trap clusters at grain junctions in halide perovskites 期刊论文
NATURE, 2020, 580 (7803) : 360-+
作者:  van den Brink, Susanne C.;  Alemany, Anna;  van Batenburg, Vincent;  Moris, Naomi;  Blotenburg, Marloes;  Vivie, Judith;  Baillie-Johnson, Peter;  Nichols, Jennifer;  Sonnen, Katharina F.;  Arias, Alfonso;  van Oudenaarden, Alexander
收藏  |  浏览/下载:27/0  |  提交时间:2020/07/03

Halide perovskite materials have promising performance characteristics for low-cost optoelectronic applications. Photovoltaic devices fabricated from perovskite absorbers have reached power conversion efficiencies above 25 per cent in single-junction devices and 28 per cent in tandem devices(1,2). This strong performance (albeit below the practical limits of about 30 per cent and 35 per cent, respectively(3)) is surprising in thin films processed from solution at low-temperature, a method that generally produces abundant crystalline defects(4). Although point defects often induce only shallow electronic states in the perovskite bandgap that do not affect performance(5), perovskite devices still have many states deep within the bandgap that trap charge carriers and cause them to recombine non-radiatively. These deep trap states thus induce local variations in photoluminescence and limit the device performance(6). The origin and distribution of these trap states are unknown, but they have been associated with light-induced halide segregation in mixed-halide perovskite compositions(7) and with local strain(8), both of which make devices less stable(9). Here we use photoemission electron microscopy to image the trap distribution in state-of-the-art halide perovskite films. Instead of a relatively uniform distribution within regions of poor photoluminescence efficiency, we observe discrete, nanoscale trap clusters. By correlating microscopy measurements with scanning electron analytical techniques, we find that these trap clusters appear at the interfaces between crystallographically and compositionally distinct entities. Finally, by generating time-resolved photoemission sequences of the photo-excited carrier trapping process(10,11), we reveal a hole-trapping character with the kinetics limited by diffusion of holes to the local trap clusters. Our approach shows that managing structure and composition on the nanoscale will be essential for optimal performance of halide perovskite devices.


  
Automated radial synthesis of organic molecules 期刊论文
NATURE, 2020, 579 (7799) : 379-+
作者:  van den Brink, Susanne C.;  Alemany, Anna;  van Batenburg, Vincent;  Moris, Naomi;  Blotenburg, Marloes;  Vivie, Judith;  Baillie-Johnson, Peter;  Nichols, Jennifer;  Sonnen, Katharina F.;  Martinez Arias, Alfonso;  van Oudenaarden, Alexander
收藏  |  浏览/下载:16/0  |  提交时间:2020/07/03

An automated synthesis instrument comprising a series of continuous flow modules that are radially arranged around a central switching station can achieve both linear and convergent syntheses.


Automated synthesis platforms accelerate and simplify the preparation of molecules by removing the physical barriers to organic synthesis. This provides unrestricted access to biopolymers and small molecules via reproducible and directly comparable chemical processes. Current automated multistep syntheses rely on either iterative(1-4) or linear processes(5-9), and require compromises in terms of versatility and the use of equipment. Here we report an approach towards the automated synthesis of small molecules, based on a series of continuous flow modules that are radially arranged around a central switching station. Using this approach, concise volumes can be exposed to any reaction conditions required for a desired transformation. Sequential, non-simultaneous reactions can be combined to perform multistep processes, enabling the use of variable flow rates, reuse of reactors under different conditions, and the storage of intermediates. This fully automated instrument is capable of both linear and convergent syntheses and does not require manual reconfiguration between different processes. The capabilities of this approach are demonstrated by performing optimizations and multistep syntheses of targets, varying concentrations via inline dilutions, exploring several strategies for the multistep synthesis of the anticonvulsant drug rufinamide(10), synthesizing eighteen compounds of two derivative libraries that are prepared using different reaction pathways and chemistries, and using the same reagents to perform metallaphotoredox carbon-nitrogen cross-couplings(11) in a photochemical module-all without instrument reconfiguration.


  
Structure and mechanism of the ER-based glucosyltransferase ALG6 期刊论文
NATURE, 2020, 579 (7799) : 443-+
作者:  van Veen, Sarah;  Martin, Shaun;  Van den Haute, Chris;  Benoy, Veronick;  Lyons, Joseph;  Vanhoutte, Roeland;  Kahler, Jan Pascal;  Decuypere, Jean-Paul;  Gelders, Geraldine;  Lambie, Eric;  Zielich, Jeffrey;  Swinnen, Johannes V.;  Annaert, Wim;  Agostinis, Patrizia;  Ghesquiere, Bart;  Verhelst, Steven;  Baekelandt, Veerle;  Eggermont, Jan;  Vangheluwe, Peter
收藏  |  浏览/下载:13/0  |  提交时间:2020/07/03

Analyses reveal a previously undescribed transmembrane protein fold in the endoplasmic reticulum-based glucosyltransferase ALG6 and provide a structural basis for understanding the glucose transfer mechanism.


In eukaryotic protein N-glycosylation, a series of glycosyltransferases catalyse the biosynthesis of a dolichylpyrophosphate-linked oligosaccharide before its transfer onto acceptor proteins(1). The final seven steps occur in the lumen of the endoplasmic reticulum (ER) and require dolichylphosphate-activated mannose and glucose as donor substrates(2). The responsible enzymes-ALG3, ALG9, ALG12, ALG6, ALG8 and ALG10-are glycosyltransferases of the C-superfamily (GT-Cs), which are loosely defined as containing membrane-spanning helices and processing an isoprenoid-linked carbohydrate donor substrate(3,4). Here we present the cryo-electron microscopy structure of yeast ALG6 at 3.0 angstrom resolution, which reveals a previously undescribed transmembrane protein fold. Comparison with reported GT-C structures suggests that GT-C enzymes contain a modular architecture with a conserved module and a variable module, each with distinct functional roles. We used synthetic analogues of dolichylphosphate-linked and dolichylpyrophosphate-linked sugars and enzymatic glycan extension to generate donor and acceptor substrates using purified enzymes of the ALG pathway to recapitulate the activity of ALG6 in vitro. A second cryo-electron microscopy structure of ALG6 bound to an analogue of dolichylphosphate-glucose at 3.9 angstrom resolution revealed the active site of the enzyme. Functional analysis of ALG6 variants identified a catalytic aspartate residue that probably acts as a general base. This residue is conserved in the GT-C superfamily. Our results define the architecture of ER-luminal GT-C enzymes and provide a structural basis for understanding their catalytic mechanisms.


  
Oceanic forcing of penultimate deglacial and last interglacial sea-level rise 期刊论文
NATURE, 2020, 577 (7792) : 660-+
作者:  Rizal, Yan;  Westaway, Kira E.;  Zaim, Yahdi;  van den Bergh, Gerrit D.;  Bettis, E. Arthur, III;  Morwood, Michael J.;  Huffman, O. Frank;  Grun, Rainer;  Joannes-Boyau, Renaud;  Bailey, Richard M.;  Sidarto;  Westaway, Michael C.;  Kurniawan, Iwan;  Moore, Mark W.;  Storey, Michael;  Aziz, Fachroel;  Suminto;  Zhao, Jian-xin;  Aswan;  Sipola, Maija E.;  Larick, Roy;  Zonneveld, John-Paul;  Scott, Robert;  Putt, Shelby;  Ciochon, Russell L.
收藏  |  浏览/下载:22/0  |  提交时间:2020/05/13

Sea-level histories during the two most recent deglacial-interglacial intervals show substantial differences(1-3) despite both periods undergoing similar changes in global mean temperature(4,5) and forcing from greenhouse gases(6). Although the last interglaciation (LIG) experienced stronger boreal summer insolation forcing than the present interglaciation(7), understanding why LIG global mean sea level may have been six to nine metres higher than today has proven particularly challenging(2). Extensive areas of polar ice sheets were grounded below sea level during both glacial and interglacial periods, with grounding lines and fringing ice shelves extending onto continental shelves(8). This suggests that oceanic forcing by subsurface warming may also have contributed to ice-sheet loss(9-12) analogous to ongoing changes in the Antarctic(13,14) and Greenland(15) ice sheets. Such forcing would have been especially effective during glacial periods, when the Atlantic Meridional Overturning Circulation (AMOC) experienced large variations on millennial timescales(16), with a reduction of the AMOC causing subsurface warming throughout much of the Atlantic basin(9,12,17). Here we show that greater subsurface warming induced by the longer period of reduced AMOC during the penultimate deglaciation can explain the more-rapid sea-level rise compared with the last deglaciation. This greater forcing also contributed to excess loss from the Greenland and Antarctic ice sheets during the LIG, causing global mean sea level to rise at least four metres above modern levels. When accounting for the combined influences of penultimate and LIG deglaciation on glacial isostatic adjustment, this excess loss of polar ice during the LIG can explain much of the relative sea level recorded by fossil coral reefs and speleothems at intermediate- and far-field sites.


  
Cost-benefit analysis of conservation policy: The red palm weevil in Catalonia, Spain 期刊论文
ECOLOGICAL ECONOMICS, 2020, 167
作者:  Castillo, Angela Delgado;  van den Bergh, Jeroen C. J. M.;  Savin, Ivan;  Sarto i Monteys, Victor
收藏  |  浏览/下载:7/0  |  提交时间:2020/07/02
Environmental valuation  Phoenix. spp  Ecosystem services  Invasive species  
"Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe (vol 116, pg17231, 2019) 期刊论文
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (25) : 14610-14611
作者:  Frantz, Laurent A. F.;  Haile, James;  Lin, Audrey T.;  Scheu, Amelie;  Geoerg, Christina;  Benecke, Norbert;  Alexander, Michelle;  Linderholm, Anna;  Mullin, Victoria E.;  Daly, Kevin G.;  Battista, Vincent M.;  Price, Max;  Gron, Kurt J.;  Alexandri, Panoraia;  Arbogast, Rose-Marie;  Arbuckle, Benjamin;  Balasescu, Adrian;  Barnett, Ross;  Bartosiewicz, Laszlo;  Baryshnikov, Gennady;  Bonsall, Clive;  Boric, Dian;  Boroneant, Adina;  Bulatovic, Jelena;  Cakirlar, Canan;  Carreterow, Jose-Miguel;  Chapman, John;  Church, Mike;  Crooijmans, Richard;  De Cupere, Bea;  Detry, Cleia;  Dimitrijevic, Vesna;  Dumitrascu, Valentin;  du Plessis, Louis;  Edwards, Ceiridwen J.;  Erek, Cevdet Merih;  Erim-Ozdogan, Ash;  Ervynck, Anton;  Fulgione, Domenico;  Gligor, Mihai;  Gotherstrom, Anders;  Gourichon, Lionel;  Groenen, Martien A. M.;  Helmer, Daniel;  Hongo, Hitomi;  Horwitz, Liora K.;  Irving-Pease, Evan K.;  Lebrasseur, Ophelie;  Lesur, Josephine;  Malone, Caroline;  Manaseryan, Ninna;  Marciniak, Arkadiusz;  Martlew, Holley;  Mashkour, Marjan;  Matthews, Roger;  Matuzeviciute, Giedre Motuzaite;  Maziar, Sepideh;  Meijaard, Erik;  McGovern, Tom;  Megens, Hendrik-Jan;  Miller, Rebecca;  Mohaseb, Azadeh Fatemeh;  Orschiedt, Jorg;  Orton, David;  Papathanasiou, Anastasia;  Pearson, Mike Parker;  Pinhasi, Ron;  Radmanovic, Darko;  Ricaut, Francois-Xavier;  Richards, Mike;  Sabin, Richard;  Sarti, Lucia;  Schier, Wolfram;  Sheikhi, Shiva;  Stephan, Elisabeth;  Stewart, John R.;  Stoddart, Simon;  Tagliacozzo, Antonio;  Tasic, Nenad;  Trantalidou, Katerina;  Tresset, Anne;  Valdiosera, Cristina;  van den Hurk, Youri;  Van Poucke, Sophie;  Vigne, Jean-Denis;  Yanevich, Alexander;  Zeeb-Lanz, Andrea;  Triantafyllidis, Alexandros;  Gilbert, M. Thomas P.;  Schibler, Jorg;  Rowley-Conwy, Peter;  Zeder, Melinda;  Peters, Joris;  Cucchi, Thomas;  Bradley, Daniel G.;  Dobney, Keith;  Burger, Joachim;  Evin, Allowen;  Girdland-Flink, Linus;  Larson, Greger
收藏  |  浏览/下载:18/0  |  提交时间:2020/02/17
Lactose drives Enterococcus expansion to promote graft-versus-host disease 期刊论文
SCIENCE, 2019, 366 (6469) : 1143-+
作者:  Stein-Thoeringer, C. K.;  Nichols, K. B.;  Lazrak, A.;  Docampo, M. D.;  Slingerland, A. E.;  Slingerland, J. B.;  Clurman, A. G.;  Armijo, G.;  Gomes, A. L. C.;  Shono, Y.;  Staffas, A.;  da Silva, M. Burgos;  Devlin, S. M.;  Markey, K. A.;  Bajic, D.;  Pinedo, R.;  Tsakmaklis, A.;  Littmann, E. R.;  Pastore, A.;  Taur, Y.;  Monette, S.;  Arcila, M. E.;  Pickard, A. J.;  Maloy, M.;  Wright, R. J.;  Amoretti, L. A.;  Fontana, E.;  Pham, D.;  Jamal, M. A.;  Weber, D.;  Sung, A. D.;  Hashimoto, D.;  Scheid, C.;  Xavier, J. B.;  Messina, J. A.;  Romero, K.;  Lew, M.;  Bush, A.;  Bohannon, L.;  Hayasaka, K.;  Hasegawa, Y.;  Vehreschild, M. J. G. T.;  Cross, J. R.;  Ponce, D. M.;  Perales, M. A.;  Giralt, S. A.;  Jenq, R. R.;  Teshima, T.;  Holler, E.;  Chao, N. J.;  Pamer, E. G.;  Peled, J. U.;  van den Brink, M. R. M.
收藏  |  浏览/下载:14/0  |  提交时间:2020/02/17