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Intraspecific difference among herbivore lineages and their host-plant specialization drive the strength of trophic cascades 期刊论文
ECOLOGY LETTERS, 2020, 23 (8) : 1242-1251
作者:  Sentis, Arnaud;  Bertram, Raphael;  Dardenne, Nathalie;  Simon, Jean-Christophe;  Magro, Alexandra;  Pujol, Benoit;  Danchin, Etienne;  Hemptinne, Jean-Louis
收藏  |  浏览/下载:61/0  |  提交时间:2020/05/13
Evo-to-eco  genetic variation  herbivory  host-plant adaptation  indirect effects  tri-trophic interactions  
Hepatic NADH reductive stress underlies common variation in metabolic traits 期刊论文
NATURE, 2020, 583 (7814) : 122-+
作者:  Skov, Laurits;  Coll Macia, Moises;  Sveinbjoernsson, Gardar;  Mafessoni, Fabrizio;  Lucotte, Elise A.;  Einarsdottir, Margret S.;  Jonsson, Hakon;  Halldorsson, Bjarni;  Gudbjartsson, Daniel F.;  Helgason, Agnar;  Schierup, Mikkel Heide;  Stefansson, Kari
收藏  |  浏览/下载:43/0  |  提交时间:2020/07/03

The cellular NADH/NAD(+) ratio is fundamental to biochemistry, but the extent to which it reflects versus drives metabolic physiology in vivo is poorly understood. Here we report the in vivo application of Lactobacillus brevis (Lb)NOX1, a bacterial water-forming NADH oxidase, to assess the metabolic consequences of directly lowering the hepatic cytosolic NADH/NAD(+) ratio in mice. By combining this genetic tool with metabolomics, we identify circulating alpha-hydroxybutyrate levels as a robust marker of an elevated hepatic cytosolic NADH/NAD(+) ratio, also known as reductive stress. In humans, elevations in circulating alpha-hydroxybutyrate levels have previously been associated with impaired glucose tolerance(2), insulin resistance(3) and mitochondrial disease(4), and are associated with a common genetic variant in GCKR(5), which has previously been associated with many seemingly disparate metabolic traits. Using LbNOX, we demonstrate that NADH reductive stress mediates the effects of GCKR variation on many metabolic traits, including circulating triglyceride levels, glucose tolerance and FGF21 levels. Our work identifies an elevated hepatic NADH/NAD(+) ratio as a latent metabolic parameter that is shaped by human genetic variation and contributes causally to key metabolic traits and diseases. Moreover, it underscores the utility of genetic tools such as LbNOX to empower studies of '  causal metabolism'  .


The authors identify an increased hepatic NADH/NAD(+) ratio as an underlying metabolic parameter that is shaped by human genetic variation and contributes causally to key metabolic traits and diseases.


  
Live-animal imaging of native haematopoietic stem and progenitor cells 期刊论文
NATURE, 2020, 578 (7794) : 278-+
作者:  Gerstung, Moritz;  Jolly, Clemency;  Leshchiner, Ignaty;  Dentro, Stefan C.;  Gonzalez, Santiago;  Rosebrock, Daniel;  Mitchell, Thomas J.;  Rubanova, Yulia;  Anur, Pavana;  Yu, Kaixian;  Tarabichi, Maxime;  Deshwar, Amit;  Wintersinger, Jeff;  Kleinheinz, Kortine;  Vazquez-Garcia, Ignacio;  Haase, Kerstin;  Jerman, Lara;  Sengupta, Subhajit;  Macintyre, Geoff;  Malikic, Salem;  Donmez, Nilgun;  Livitz, Dimitri G.;  Cmero, Marek;  Demeulemeester, Jonas;  Schumacher, Steven;  Fan, Yu;  Yao, Xiaotong;  Lee, Juhee;  Schlesner, Matthias;  Boutros, Paul C.;  Bowtell, David D.;  Zhu, Hongtu;  Getz, Gad;  Imielinski, Marcin;  Beroukhim, Rameen;  Sahinalp, S. Cenk;  Ji, Yuan;  Peifer, Martin;  Markowetz, Florian;  Mustonen, Ville;  Yuan, Ke;  Wang, Wenyi;  Morris, Quaid D.;  Spellman, Paul T.;  Wedge, David C.;  Van Loo, Peter;  Deshwar, Amit G.;  Adams, David J.;  Campbell, Peter J.;  Cao, Shaolong;  Christie, Elizabeth L.;  Cun, Yupeng;  Dawson, Kevin J.;  Drews, Ruben M.;  Eils, Roland;  Fittall, Matthew;  Garsed, Dale W.;  Ha, Gavin;  Lee-Six, Henry;  Martincorena, Inigo;  Oesper, Layla;  Peto, Myron;  Raphael, Benjamin J.;  Salcedo, Adriana;  Shi, Ruian;  Shin, Seung Jun;  Spiro, Oliver;  Stein, Lincoln D.;  Vembu, Shankar;  Wheeler, David A.;  Yang, Tsun-Po
收藏  |  浏览/下载:45/0  |  提交时间:2020/07/03

The biology of haematopoietic stem cells (HSCs) has predominantly been studied under transplantation conditions(1,2). It has been particularly challenging to study dynamic HSC behaviour, given that the visualization of HSCs in the native niche in live animals has not, to our knowledge, been achieved. Here we describe a dual genetic strategy in mice that restricts reporter labelling to a subset of the most quiescent long-term HSCs (LT-HSCs) and that is compatible with current intravital imaging approaches in the calvarial bone marrow(3-5). We show that this subset of LT-HSCs resides close to both sinusoidal blood vessels and the endosteal surface. By contrast, multipotent progenitor cells (MPPs) show greater variation in distance from the endosteum and are more likely to be associated with transition zone vessels. LT-HSCs are not found in bone marrow niches with the deepest hypoxia and instead are found in hypoxic environments similar to those of MPPs. In vivo time-lapse imaging revealed that LT-HSCs at steady-state show limited motility. Activated LT-HSCs show heterogeneous responses, with some cells becoming highly motile and a fraction of HSCs expanding clonally within spatially restricted domains. These domains have defined characteristics, as HSC expansion is found almost exclusively in a subset of bone marrow cavities with bone-remodelling activity. By contrast, cavities with low bone-resorbing activity do not harbour expanding HSCs. These findings point to previously unknown heterogeneity within the bone marrow microenvironment, imposed by the stages of bone turnover. Our approach enables the direct visualization of HSC behaviours and dissection of heterogeneity in HSC niches.


A dual genetic strategy enables the labelling and in vivo imaging of native long-term haematopoietic stem cells in the mouse calvarial bone marrow.


  
Strong habitat and weak genetic effects shape the lifetime reproductive success in a wild clownfish population 期刊论文
ECOLOGY LETTERS, 2020, 23 (2) : 265-273
作者:  Salles, Oceane C.;  Almany, Glenn R.;  Berumen, Michael L.;  Jones, Geoffrey P.;  Saenz-Agudelo, Pablo;  Srinivasan, Maya;  Thorrold, Simon R.;  Pujol, Benoit;  Planes, Serge
收藏  |  浏览/下载:16/0  |  提交时间:2020/07/02
Adaptation  additive genetic variation  environmental effects  evolvability  heritability  maternal effects  multi-generational pedigree  selection  
Strong habitat and weak genetic effects shape the lifetime reproductive success in a wild clownfish population 期刊论文
ECOLOGY LETTERS, 2020, 23 (2) : 265-273
作者:  Salles, Oceane C.;  Almany, Glenn R.;  Berumen, Michael L.;  Jones, Geoffrey P.;  Saenz-Agudelo, Pablo;  Srinivasan, Maya;  Thorrold, Simon R.;  Pujol, Benoit;  Planes, Serge
收藏  |  浏览/下载:22/0  |  提交时间:2020/02/17
Adaptation  additive genetic variation  environmental effects  evolvability  heritability  maternal effects  multi-generational pedigree  selection  
Plant domestication disrupts biodiversity effects across major crop types 期刊论文
ECOLOGY LETTERS, 2019, 22 (9) : 1472-1482
作者:  Chacon-Labella, Julia;  Garcia Palacios, Pablo;  Matesanz, Silvia;  Schob, Christian;  Milla, Ruben
收藏  |  浏览/下载:21/0  |  提交时间:2019/11/27
Biodiversity-ecosystem functioning  complementarity effects  crop ecology  diversity-productivity relationship  evolution  functional traits  genetic variation  over-yielding  polycultures  selection effects  
Climate-driven reduction of genetic variation in plant phenology alters soil communities and nutrient pools 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (4) : 1514-1528
作者:  Ware, Ian M.;  Van Nuland, Michael E.;  Schweitzer, Jennifer A.;  Yang, Zamin;  Schadt, Christopher W.;  Sidak-Loftis, Lindsay C.;  Stone, Nathan E.;  Busch, Joseph D.;  Wagner, David M.;  Bailey, Joseph K.
收藏  |  浏览/下载:25/0  |  提交时间:2019/04/09
climate  ecosystem dynamics  genetic divergence  intraspecific variation  phenology  Populus  
Local adaptation, genetic divergence, and experimental selection in a foundation grass across the US Great Plains' climate gradient 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (3) : 850-868
作者:  Galliart, Matthew;  Bello, Nora;  Knapp, Mary;  Poland, Jesse;  St Amand, Paul;  Baer, Sara;  Maricle, Brian;  Smith, Adam B.;  Johnson, Loretta
收藏  |  浏览/下载:16/0  |  提交时间:2019/04/09
Andropogon gerardii  climate change  ecotypes  experimental selection  genetic variation  intraspecific variation  
Plastic and genetic responses of a common sedge to warming have contrasting effects on carbon cycle processes 期刊论文
ECOLOGY LETTERS, 2019, 22 (1) : 159-169
作者:  Walker, Tom W. N.;  Weckwerth, Wolfram;  Bragazza, Luca;  Fragner, Lena;  Forde, Brian G.;  Ostle, Nicholas J.;  Signarbieux, Constant;  Sun, Xiaoliang;  Ward, Susan E.;  Bardgett, Richard D.
收藏  |  浏览/下载:28/0  |  提交时间:2019/04/09
Carbon cycle  climate feedbacks  climate warming  Eriophorum vaginatum  genetic adaptation  intraspecific variation  natural selection  phenotypic plasticity  plant ecophysiology  plant metabolism  
Carryover effects from natal habitat type upon competitive ability lead to trait divergence or source-sink dynamics 期刊论文
ECOLOGY LETTERS, 2018, 21 (9) : 1341-1352
作者:  Kristensen, Nadiah Pardede;  Johansson, Jacob;  Chisholm, Ryan A.;  Smith, Henrik G.;  Kokko, Hanna
收藏  |  浏览/下载:18/0  |  提交时间:2019/04/09
Developmental effects  ecological speciation  epigenetics  habitat selection  maternal effects  natal effects  natal-habitat preference induction  silver spoon  source-sink  spatial genetic variation