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德国PIK发布新的全球高分辨率大气河数据集 快报文章
资源环境快报,2025年第16期
作者:  刘燕飞
Microsoft Word(31Kb)  |  收藏  |  浏览/下载:377/0  |  提交时间:2025/08/29
Atmospheric Rivers  data set  PIKART  
A metabolic pathway for bile acid dehydroxylation by the gut microbiome 期刊论文
NATURE, 2020
作者:  Zhong, Miao;  Tran, Kevin;  Min, Yimeng;  Wang, Chuanhao;  Wang, Ziyun;  Dinh, Cao-Thang;  De Luna, Phil;  Yu, Zongqian;  Rasouli, Armin Sedighian;  Brodersen, Peter;  Sun, Song;  Voznyy, Oleksandr;  Tan, Chih-Shan;  Askerka, Mikhail;  Che, Fanglin;  Liu, Min;  Seifitokaldani, Ali;  Pang, Yuanjie;  Lo, Shen-Chuan;  Ip, Alexander;  Ulissi, Zachary;  Sargent, Edward H.
收藏  |  浏览/下载:53/0  |  提交时间:2020/07/03

The biosynthetic pathway that produces the secondary bile acids DCA and LCA in human gut microbes has been fully characterized, engineered into another bacterial host, and used to confer DCA production in germ-free mice-an important proof-of-principle for the engineering of gut microbial pathways.


The gut microbiota synthesize hundreds of molecules, many of which influence host physiology. Among the most abundant metabolites are the secondary bile acids deoxycholic acid (DCA) and lithocholic acid (LCA), which accumulate at concentrations of around 500 mu M and are known to block the growth ofClostridium difficile(1), promote hepatocellular carcinoma(2)and modulate host metabolism via the G-protein-coupled receptor TGR5 (ref.(3)). More broadly, DCA, LCA and their derivatives are major components of the recirculating pool of bile acids(4)  the size and composition of this pool are a target of therapies for primary biliary cholangitis and nonalcoholic steatohepatitis. Nonetheless, despite the clear impact of DCA and LCA on host physiology, an incomplete knowledge of their biosynthetic genes and a lack of genetic tools to enable modification of their native microbial producers limit our ability to modulate secondary bile acid levels in the host. Here we complete the pathway to DCA and LCA by assigning and characterizing enzymes for each of the steps in its reductive arm, revealing a strategy in which the A-B rings of the steroid core are transiently converted into an electron acceptor for two reductive steps carried out by Fe-S flavoenzymes. Using anaerobic in vitro reconstitution, we establish that a set of six enzymes is necessary and sufficient for the eight-step conversion of cholic acid to DCA. We then engineer the pathway intoClostridium sporogenes, conferring production of DCA and LCA on a nonproducing commensal and demonstrating that a microbiome-derived pathway can be expressed and controlled heterologously. These data establish a complete pathway to two central components of the bile acid pool.


  
Biodiversity theory backed by island bird data 期刊论文
NATURE, 2020, 579 (7797) : 36-37
作者:  AlQuraishi, Mohammed
收藏  |  浏览/下载:23/0  |  提交时间:2020/07/03

Analysis of a unique global data set reveals how the species diversity of birds is affected by the properties of archipelagos and offers a way to test an influential theory. Has this improved our understanding of island biodiversity patterns?


  
The evolutionary history of 2,658 cancers 期刊论文
NATURE, 2020, 578 (7793) : 122-+
作者:  Tao, Panfeng;  Sun, Jinqiao;  Wu, Zheming;  Wang, Shihao;  Wang, Jun;  Li, Wanjin;  Pan, Heling;  Bai, Renkui;  Zhang, Jiahui;  Wang, Ying;  Lee, Pui Y.;  Ying, Wenjing;  Zhou, Qinhua;  Hou, Jia;  Wang, Wenjie;  Sun, Bijun;  Yang, Mi;  Liu, Danru;  Fang, Ran;  Han, Huan;  Yang, Zhaohui;  Huang, Xin;  Li, Haibo;  Deuitch, Natalie;  Zhang, Yuan;  Dissanayake, Dilan;  Haude, Katrina;  McWalter, Kirsty;  Roadhouse, Chelsea;  MacKenzie, Jennifer J.;  Laxer, Ronald M.;  Aksentijevich, Ivona;  Yu, Xiaomin;  Wang, Xiaochuan;  Yuan, Junying;  Zhou, Qing
收藏  |  浏览/下载:83/0  |  提交时间:2020/07/03

Cancer develops through a process of somatic evolution(1,2). Sequencing data from a single biopsy represent a snapshot of this process that can reveal the timing of specific genomic aberrations and the changing influence of mutational processes(3). Here, by whole-genome sequencing analysis of 2,658 cancers as part of the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA)(4), we reconstruct the life history and evolution of mutational processes and driver mutation sequences of 38 types of cancer. Early oncogenesis is characterized by mutations in a constrained set of driver genes, and specific copy number gains, such as trisomy 7 in glioblastoma and isochromosome 17q in medulloblastoma. The mutational spectrum changes significantly throughout tumour evolution in 40% of samples. A nearly fourfold diversification of driver genes and increased genomic instability are features of later stages. Copy number alterations often occur in mitotic crises, and lead to simultaneous gains of chromosomal segments. Timing analyses suggest that driver mutations often precede diagnosis by many years, if not decades. Together, these results determine the evolutionary trajectories of cancer, and highlight opportunities for early cancer detection.


  
Etesians and the summer circulation over East Mediterranean in Coupled Model Intercomparison Project Phase 5 simulations: Connections to the Indian summer monsoon 期刊论文
INTERNATIONAL JOURNAL OF CLIMATOLOGY, 2019
作者:  Logothetis, Ioannis;  Tourpali, Kleareti;  Misios, Stergios;  Zanis, Prodromos
收藏  |  浏览/下载:20/0  |  提交时间:2019/11/27
atmospheric circulation  CMIP5  East Mediterranean  ESMs  Etesian winds  Indian summer monsoon  reanalysis data set  subsidence  
Choice of reference climate conditions matters in impact studies: Case of bias-corrected CORDEX data set 期刊论文
INTERNATIONAL JOURNAL OF CLIMATOLOGY, 2019, 39 (4) : 2022-2040
作者:  Dobor, Laura;  Hlasny, Tomas
收藏  |  浏览/下载:20/0  |  提交时间:2019/11/26
bias correction  biogeographical zone  climate change  EURO-CORDEX data set  regional climate model  residual bias  
An Updated Model Providing Long-Term Data Sets of Energetic Electron Precipitation, Including Zonal Dependence 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2018, 123 (17) : 9891-9915
作者:  van de Kamp, M.;  Rodger, C. J.;  Seppala, A.;  Clilverd, M. A.;  Verronen, P. T.
收藏  |  浏览/下载:22/0  |  提交时间:2019/04/09
energetic electron precipitation  energetic particle precipitation  magnetic local time  ionization  solar particle forcing  synthesized data set  
Evaluation of three global gridded precipitation data sets in central Asia based on rain gauge observations 期刊论文
INTERNATIONAL JOURNAL OF CLIMATOLOGY, 2018, 38 (9) : 3475-3493
作者:  Hu, Zengyun;  Zhou, Qiming;  Chen, Xi;  Li, Jianfeng;  Li, Qingxiang;  Chen, Deliang;  Liu, Wenbin;  Yin, Gang
收藏  |  浏览/下载:28/0  |  提交时间:2019/04/09
central Asia  evaluation  gridded precipitation data set  rain gauge observation  
The impact of the resolution of meteorological data sets on catchment-scale precipitation and drought studies 期刊论文
INTERNATIONAL JOURNAL OF CLIMATOLOGY, 2018, 38 (7) : 3069-3081
作者:  Hellwig, Jost;  Stahl, Kerstin;  Ziese, Markus;  Becker, Andreas
收藏  |  浏览/下载:18/0  |  提交时间:2019/04/09
catchment scale  data set resolution  E-OBS  GPCC  gridded meteorological data sets  meteorological drought  REGNIE  
Inter-comparison of methods to homogenize daily relative humidity 期刊论文
INTERNATIONAL JOURNAL OF CLIMATOLOGY, 2018, 38 (7) : 3106-3122
作者:  Chimani, Barbara;  Venema, Victor;  Lexer, Annemarie;  Andre, Konrad;  Auer, Ingeborg;  Nemec, Johanna
收藏  |  浏览/下载:23/0  |  提交时间:2019/04/09
daily data  homogenization  method comparison  relative humidity  surrogate data  validation data set