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Spatial Dependence of Floods Shaped by Spatiotemporal Variations in Meteorological and Land-Surface Processes 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2020, 47 (13)
作者:  Brunner, Manuela, I;  Gilleland, Eric;  Wood, Andy;  Swain, Daniel L.;  Clark, Martyn
收藏  |  浏览/下载:20/0  |  提交时间:2020/06/16
spatial dependence  extremes  flood  precipitation  weather patterns  co-occurrence  
Co-occurrence is not evidence of ecological interactions 期刊论文
ECOLOGY LETTERS, 2020, 23 (7) : 1050-1063
作者:  Blanchet, F. Guillaume;  Cazelles, Kevin;  Gravel, Dominique
收藏  |  浏览/下载:9/0  |  提交时间:2020/05/20
Co-occurrence analysis  co-occurrence networks  ecological interactions  presence-absence data  statistical inference  
Late Cretaceous neornithine from Europe illuminates the origins of crown birds 期刊论文
NATURE, 2020, 579 (7799) : 397-+
作者:  Shao, Zhengping;  Flynn, Ryan A.;  Crowe, Jennifer L.;  Zhu, Yimeng;  Liang, Jialiang;  Jiang, Wenxia;  Aryan, Fardin;  Aoude, Patrick;  Bertozzi, Carolyn R.;  Estes, Verna M.;  Lee, Brian J.;  Bhagat, Govind;  Zha, Shan;  Calo, Eliezer
收藏  |  浏览/下载:15/0  |  提交时间:2020/05/13

Our understanding of the earliest stages of crown bird evolution is hindered by an exceedingly sparse avian fossil record from the Mesozoic era. The most ancient phylogenetic divergences among crown birds are known to have occurred in the Cretaceous period(1-3), but stem-lineage representatives of the deepest subclades of crown birds-Palaeognathae (ostriches and kin), Galloanserae (landfowl and waterfowl) and Neoaves (all other extant birds)-are unknown from the Mesozoic era. As a result, key questions related to the ecology(4,5), biogeography(3,6,7) and divergence times(1,8-10) of ancestral crown birds remain unanswered. Here we report a new Mesozoic fossil that occupies a position close to the last common ancestor of Galloanserae and fills a key phylogenetic gap in the early evolutionary history of crown birds(10,11). Asteriornis maastrichtensis, gen. et sp. nov., from the Maastrichtian age of Belgium (66.8-66.7 million years ago), is represented by a nearly complete, three-dimensionally preserved skull and associated postcranial elements. The fossil represents one of the only well-supported crown birds from the Mesozoic era(12), and is the first Mesozoic crown bird with well-represented cranial remains. Asteriornis maastrichtensis exhibits a previously undocumented combination of galliform (landfowl)-like and anseriform (waterfowl)-like features, and its presence alongside a previously reported Ichthyornis-like taxon from the same locality(13) provides direct evidence of the co-occurrence of crown birds and avialan stem birds. Its occurrence in the Northern Hemisphere challenges biogeographical hypotheses of a Gondwanan origin of crown birds(3), and its relatively small size and possible littoral ecology may corroborate proposed ecological filters(4,5,9) that influenced the persistence of crown birds through the end-Cretaceous mass extinction.


A newly discovered fossil from the Cretaceous of Belgium is the oldest modern bird ever found, showing a unique combination of features and suggesting attributes shared by avian survivors of the end-Cretaceous extinction.


  
Mutational signature in colorectal cancer caused by genotoxic pks(+)E. coli 期刊论文
NATURE, 2020, 580 (7802) : 269-+
作者:  Lin, Xi;  Li, Mingyue;  Wang, Niandong;  Wu, Yiran;  Luo, Zhipu;  Guo, Shimeng;  Han, Gye-Won;  Li, Shaobai;  Yue, Yang;  Wei, Xiaohu;  Xie, Xin;  Chen, Yong;  Zhao, Suwen;  Wu, Jian;  Lei, Ming;  Xu, Fei
收藏  |  浏览/下载:24/0  |  提交时间:2020/07/03

Various species of the intestinal microbiota have been associated with the development of colorectal cancer(1,2), but it has not been demonstrated that bacteria have a direct role in the occurrence of oncogenic mutations. Escherichia coli can carry the pathogenicity island pks, which encodes a set of enzymes that synthesize colibactin(3). This compound is believed to alkylate DNA on adenine residues(4,5) and induces double-strand breaks in cultured cells(3). Here we expose human intestinal organoids to genotoxic pks(+)E. coli by repeated luminal injection over five months. Whole-genome sequencing of clonal organoids before and after this exposure revealed a distinct mutational signature that was absent from organoids injected with isogenic pks-mutant bacteria. The same mutational signature was detected in a subset of 5,876 human cancer genomes from two independent cohorts, predominantly in colorectal cancer. Our study describes a distinct mutational signature in colorectal cancer and implies that the underlying mutational process results directly from past exposure to bacteria carrying the colibactin-producing pks pathogenicity island.


Organoids derived from human intestinal cells that are co-cultured with bacteria carrying the genotoxic pks(+) island develop a distinct mutational signature associated with colorectal cancer.


  
Tertiary lymphoid structures improve immunotherapy and survival in melanoma 期刊论文
NATURE, 2020, 577 (7791) : 561-+
作者:  Cabrita, Rita;  Lauss, Martin;  Sanna, Adriana;  Donia, Marco;  Larsen, Mathilde Skaarup;  Mitra, Shamik;  Johansson, Iva;  Phung, Bengt;  Harbst, Katja;  Vallon-Christersson, Johan;  van Schoiack, Alison;  Loevgren, Kristina;  Warren, Sarah;  Jirstroem, Karin;  Olsson, Hakan;  Pietras, Kristian;  Ingvar, Christian;  Isaksson, Karolin;  Schadendorf, Dirk;  Schmidt, Henrik;  Bastholt, Lars;  Carneiro, Ana;  Wargo, Jennifer A.;  Svane, Inge Marie;  Jonsson, Goran
收藏  |  浏览/下载:49/0  |  提交时间:2020/07/03

Checkpoint blockade therapies that reactivate tumour-associated T cells can induce durable tumour control and result in the long-term survival of patients with advanced cancers(1). Current predictive biomarkers for therapy response include high levels of intratumour immunological activity, a high tumour mutational burden and specific characteristics of the gut microbiota(2,3). Although the role of T cells in antitumour responses has thoroughly been studied, other immune cells remain insufficiently explored. Here we use clinical samples of metastatic melanomas to investigate the role of B cells in antitumour responses, and find that the co-occurrence of tumour-associated CD8(+) T cells and CD20(+) B cells is associated with improved survival, independently of other clinical variables. Immunofluorescence staining of CXCR5 and CXCL13 in combination with CD20 reveals the formation of tertiary lymphoid structures in these CD8(+)CD20(+) tumours. We derived a gene signature associated with tertiary lymphoid structures, which predicted clinical outcomes in cohorts of patients treated with immune checkpoint blockade. Furthermore, B-cell-rich tumours were accompanied by increased levels of TCF7(+) naive and/or memory T cells. This was corroborated by digital spatial-profiling data, in which T cells in tumours without tertiary lymphoid structures had a dysfunctional molecular phenotype. Our results indicate that tertiary lymphoid structures have a key role in the immune microenvironment in melanoma, by conferring distinct T cell phenotypes. Therapeutic strategies to induce the formation of tertiary lymphoid structures should be explored to improve responses to cancer immunotherapy.


The co-occurrence of tumour-associated CD8(+) T cells and CD20(+) B cells, and the formation of tertiary lymphoid structures, are linked with improved survival in cohorts of patients with metastatic melanoma.


  
Investigating the Role of the Relative Humidity in the Co-Occurrence of Temperature and Heat Stress Extremes in CMIP5 Projections 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019
作者:  Brouillet, Audrey;  Joussaume, Sylvie
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
extremes  heat stress  temperature  relative humidity  co-occurrence  
Does conversion from natural forest to plantation affect fungal and bacterial biodiversity, community structure, and co-occurrence networks in the organic horizon and mineral soil? 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 446: 238-250
作者:  Nakayama, Masataka;  Imamura, Shihomi;  Taniguchi, Takeshi;  Tateno, Ryunosuke
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
Forest conversion  Microbial biodiversity  Microbial co-occurrence network  Temperate forests  Andosol  
Ecological correlates of the spatial co-occurrence of sympatric mammalian carnivores worldwide 期刊论文
ECOLOGY LETTERS, 2018, 21 (9) : 1401-1412
作者:  Davis, Courtney L.;  Rich, Lindsey N.;  Farris, Zach J.;  Kelly, Marcella J.;  Di Bitetti, Mario S.;  Di Blanco, Yamil;  Albanesi, Sebastian;  Farhadinia, Mohammad S.;  Gholikhani, Navid;  Hamel, Sandra;  Harmsen, Bart J.;  Wultsch, Claudia;  Kane, Mamadou D.;  Martins, Quinton;  Murphy, Asia J.;  Steenweg, Robin;  Sunarto, Sunarto;  Taktehrani, Atieh;  Thapa, Kanchan;  Tucker, Jody M.;  Whittington, Jesse;  Widodo, Febri A.;  Yoccoz, Nigel G.;  Miller, David A. W.
收藏  |  浏览/下载:9/0  |  提交时间:2019/04/09
Camera trap  ecological traits  global assessment  interspecific interactions  local community structure  spatial co-occurrence  
Trend in the Co-Occurrence of Extreme Daily Rainfall in West Africa Since 1950 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2018, 123 (3) : 1536-1551
作者:  Blanchet, Juliette;  Aly, Claire;  Vischel, Theo;  Panthou, Geremy;  Sane, Youssouph;  Kane, Mariane Diop
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
extreme rainfall  West Africa  co-occurrence  trend  
Co-benefits of greenhouse gas mitigation: a review and classification by type, mitigation sector, and geography 期刊论文
ENVIRONMENTAL RESEARCH LETTERS, 2017, 12 (12)
作者:  Deng, Hong-Mei;  Liang, Qiao-Mei;  Liu, Li-Jing;  Anadon, Laura Diaz
收藏  |  浏览/下载:3/0  |  提交时间:2019/04/09
co-benefits  greenhouse gas mitigation  bibliometric analysis  co-occurrence analysis  geographic level  sectors  methods