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The relative importance of plasticity versus genetic differentiation in explaining between population differences; a meta-analysis 期刊论文
ECOLOGY LETTERS, 2020
作者:  Stamp, Megan A.;  Hadfield, Jarrod D.
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/14
Counter-gradient variation  Gene-flow  local adaptation  phenotypic plasticity  
Compensating for climate change-induced cue-environment mismatches: evidence for contemporary evolution of a photoperiodic reaction norm in Colias butterflies 期刊论文
ECOLOGY LETTERS, 2020, 23 (7) : 1129-1136
作者:  Nielsen, Matthew E.;  Kingsolver, Joel G.
收藏  |  浏览/下载:9/0  |  提交时间:2020/05/13
Climate change  Colias eurytheme  contemporary evolution  evolutionary trap  melanization  phenotypic plasticity  photoperiod  reaction norm  seasonal mismatch  
Climate drives among-year variation in natural selection on flowering time 期刊论文
ECOLOGY LETTERS, 2020, 23 (4) : 653-662
作者:  Ehrlen, Johan;  Valdes, Alicia
收藏  |  浏览/下载:4/0  |  提交时间:2020/07/02
Climate  Lathyrus vernus  phenology  phenotypic plasticity  phenotypic selection  selection gradients  timing of reproduction  
The strength and pattern of natural selection on gene expression in rice 期刊论文
NATURE, 2020, 578 (7796) : 572-+
作者:  Lipson, Mark;  Ribot, Isabelle;  Mallick, Swapan;  Rohland, Nadin;  Olalde, Inigo;  Adamski, Nicole;  Broomandkhoshbacht, Nasreen;  Lawson, Ann Marie;  Lopez, Saioa;  Oppenheimer, Jonas;  Stewardson, Kristin
收藏  |  浏览/下载:19/0  |  提交时间:2020/07/03

Levels of gene expression underpin organismal phenotypes(1,2), but the nature of selection that acts on gene expression and its role in adaptive evolution remain unknown(1,2). Here we assayed gene expression in rice (Oryza sativa)(3), and used phenotypic selection analysis to estimate the type and strength of selection on the levels of more than 15,000 transcripts(4,5). Variation in most transcripts appears (nearly) neutral or under very weak stabilizing selection in wet paddy conditions (with median standardized selection differentials near zero), but selection is stronger under drought conditions. Overall, more transcripts are conditionally neutral (2.83%) than are antagonistically pleiotropic(6) (0.04%), and transcripts that display lower levels of expression and stochastic noise(7-9) and higher levels of plasticity(9) are under stronger selection. Selection strength was further weakly negatively associated with levels of cis-regulation and network connectivity(9). Our multivariate analysis suggests that selection acts on the expression of photosynthesis genes(4,5), but that the efficacy of selection is genetically constrained under drought conditions(10). Drought selected for earlier flowering(11,12) and a higher expression of OsMADS18 (Os07g0605200), which encodes a MADS-box transcription factor and is a known regulator of early flowering(13)-marking this gene as a drought-escape gene(11,12). The ability to estimate selection strengths provides insights into how selection can shape molecular traits at the core of gene action.


Phenotypic selection analysis is used to estimate the type and strength of selection that acts on more than 15,000 transcripts in rice (Oryza sativa), which provides insight into the adaptive evolutionary role of selection on gene expression.


  
TGF-beta orchestrates fibrogenic and developmental EMTs via the RAS effector RREB1 期刊论文
NATURE, 2020, 577 (7791) : 566-+
作者:  Su, Jie;  Morgani, Sophie M.;  David, Charles J.;  Wang, Qiong;  Er, Ekrem Emrah;  Huang, Yun-Han;  Basnet, Harihar;  Zou, Yilong;  Shu, Weiping;  Soni, Rajesh K.;  Hendrickson, Ronald C.;  Hadjantonakis, Anna-Katerina;  Massague, Joan
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/03

Epithelial-to-mesenchymal transitions (EMTs) are phenotypic plasticity processes that confer migratory and invasive properties to epithelial cells during development, wound-healing, fibrosis and cancer(1-4). EMTs are driven by SNAIL, ZEB and TWIST transcription factors(5,6) together with microRNAs that balance this regulatory network(7,8). Transforming growth factor beta (TGF-beta) is a potent inducer of developmental and fibrogenic EMTs4,9,10. Aberrant TGF-beta signalling and EMT are implicated in the pathogenesis of renal fibrosis, alcoholic liver disease, non-alcoholic steatohepatitis, pulmonary fibrosis and cancer(4,11). TGF-beta depends on RAS and mitogen-activated protein kinase (MAPK) pathway inputs for the induction of EMTs12-19. Here we show how these signals coordinately trigger EMTs and integrate them with broader pathophysiological processes. We identify RAS-responsive element binding protein 1 (RREB1), a RAS transcriptional effector(20,21), as a key partner of TGF-beta-activated SMAD transcription factors in EMT. MAPK-activated RREB1 recruits TGF-beta-activated SMAD factors to SNAIL. Context-dependent chromatin accessibility dictates the ability of RREB1 and SMAD to activate additional genes that determine the nature of the resulting EMT. In carcinoma cells, TGF-beta-SMAD and RREB1 directly drive expression of SNAIL and fibrogenic factors stimulating myofibroblasts, promoting intratumoral fibrosis and supporting tumour growth. In mouse epiblast progenitors, Nodal-SMAD and RREB1 combine to induce expression of SNAIL and mesendoderm-differentiation genes that drive gastrulation. Thus, RREB1 provides a molecular link between RAS and TGF-beta pathways for coordinated induction of developmental and fibrogenic EMTs. These insights increase our understanding of the regulation of epithelial plasticity and its pathophysiological consequences in development, fibrosis and cancer.


RAS and TGF-beta pathways regulate distinct modes of epithelial-to-mesenchymal transition via RAS-responsive element binding protein 1.


  
Limitations of cross- and multigenerational plasticity for marine invertebrates faced with global climate change 期刊论文
GLOBAL CHANGE BIOLOGY, 2020, 26 (1) : 80-102
作者:  Byrne, Maria;  Foo, Shawna A.;  Ross, Pauline M.;  Putnam, Hollie M.
收藏  |  浏览/下载:16/0  |  提交时间:2020/02/17
adaptation  habitat warming  ocean acidification  phenotypic plasticity  stress resilience  
Integrating patterns of thermal tolerance and phenotypic plasticity with population genetics to improve understanding of vulnerability to warming in a widespread copepod 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Sasaki, Matthew C.;  Dam, Hans G.
收藏  |  浏览/下载:4/0  |  提交时间:2019/11/27
climate change  climate variability hypothesis  copepod  gene flow  local adaptation  macrophysiology  phenotypic plasticity  plankton  rapid adaptation  thermal performance  
Effects of climate warming on Sphagnum photosynthesis in peatlands depend on peat moisture and species-specific anatomical traits 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (11) : 3859-3870
作者:  Jassey, Vincent E. J.;  Signarbieux, Constant
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
climate change  extreme events  net photosynthesis  phenotypic plasticity  soil water content  Sphagnum fallax  Sphagnum magellanicum  temperate and boreal ecosystem  trait plasticity  
Native-source climate determines the Douglas-fir potential of adaptation to drought 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 444: 9-20
作者:  Chauvin, Thibaud;  Cochard, Herve;  Segura, Vincent;  Rozenberg, Philippe
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
Cavitation resistance  Climate change  Common garden  Evolutionary adaptation  Hydraulic traits  Phenotypic plasticity  Provenance variation  Pseudotsuga mensiesii (Mirb.) Franco  
Company matters: The presence of other genotypes alters traits and intraspecific selection in an Arctic diatom under climate change 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (9) : 2869-2884
作者:  Wolf, Klara K. E.;  Romanelli, Elisa;  Rost, Bjoern;  John, Uwe;  Collins, Sinead;  Weigand, Hannah;  Hoppe, Clara J. M.
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
allele-specific qPCR  artificial population  genotypic interactions  intraspecific diversity  multiple stressors  ocean acidification  phenotypic plasticity  selection dynamics  strain sorting  warming