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The arms race between bacteria and their phage foes 期刊论文
NATURE, 2020, 577 (7790) : 327-336
作者:  Hirschey, Matthew
收藏  |  浏览/下载:20/0  |  提交时间:2020/07/03

Bacteria are under immense evolutionary pressure from their viral invaders-bacteriophages. Bacteria have evolved numerous immune mechanisms, both innate and adaptive, to cope with this pressure. The discovery and exploitation of CRISPR-Cas systems have stimulated a resurgence in the identification and characterization of anti-phage mechanisms. Bacteriophages use an extensive battery of counter-defence strategies to co-exist in the presence of these diverse phage defence mechanisms. Understanding the dynamics of the interactions between these microorganisms has implications for phage-based therapies, microbial ecology and evolution, and the development of new biotechnological tools. Here we review the spectrum of anti-phage systems and highlight their evasion by bacteriophages.


  
英研究指出过分依赖新技术不能解决气候变化难题 快报文章
气候变化快报,2020年第10期
作者:  曾静静
Microsoft Word(15Kb)  |  收藏  |  浏览/下载:348/0  |  提交时间:2020/05/19
technological promises  climate change targets  co-evolution  
Structure of the ER membrane complex, a transmembrane-domain insertase 期刊论文
NATURE, 2020
作者:  Riemensberger, Johann;  Lukashchuk, Anton;  Karpov, Maxim;  Weng, Wenle;  Lucas, Erwan;  Liu, Junqiu;  Kippenberg, Tobias J.
收藏  |  浏览/下载:13/0  |  提交时间:2020/07/03

The cryo-electron microscopy structure of the ER membrane complex provides insight into its overall architecture, evolution and function in co-translational protein insertion.


The endoplasmic reticulum (ER) membrane complex (EMC) cooperates with the Sec61 translocon to co-translationally insert a transmembrane helix (TMH) of many multi-pass integral membrane proteins into the ER membrane, and it is also responsible for inserting the TMH of some tail-anchored proteins(1-3). How EMC accomplishes this feat has been unclear. Here we report the first, to our knowledge, cryo-electron microscopy structure of the eukaryotic EMC. We found that the Saccharomyces cerevisiae EMC contains eight subunits (Emc1-6, Emc7 and Emc10), has a large lumenal region and a smaller cytosolic region, and has a transmembrane region formed by Emc4, Emc5 and Emc6 plus the transmembrane domains of Emc1 and Emc3. We identified a five-TMH fold centred around Emc3 that resembles the prokaryotic YidC insertase and that delineates a largely hydrophilic client protein pocket. The transmembrane domain of Emc4 tilts away from the main transmembrane region of EMC and is partially mobile. Mutational studies demonstrated that the flexibility of Emc4 and the hydrophilicity of the client pocket are required for EMC function. The EMC structure reveals notable evolutionary conservation with the prokaryotic insertases(4,5), suggests that eukaryotic TMH insertion involves a similar mechanism, and provides a framework for detailed understanding of membrane insertion for numerous eukaryotic integral membrane proteins and tail-anchored proteins.


  
Late Cretaceous neornithine from Europe illuminates the origins of crown birds 期刊论文
NATURE, 2020, 579 (7799) : 397-+
作者:  Shao, Zhengping;  Flynn, Ryan A.;  Crowe, Jennifer L.;  Zhu, Yimeng;  Liang, Jialiang;  Jiang, Wenxia;  Aryan, Fardin;  Aoude, Patrick;  Bertozzi, Carolyn R.;  Estes, Verna M.;  Lee, Brian J.;  Bhagat, Govind;  Zha, Shan;  Calo, Eliezer
收藏  |  浏览/下载:15/0  |  提交时间:2020/05/13

Our understanding of the earliest stages of crown bird evolution is hindered by an exceedingly sparse avian fossil record from the Mesozoic era. The most ancient phylogenetic divergences among crown birds are known to have occurred in the Cretaceous period(1-3), but stem-lineage representatives of the deepest subclades of crown birds-Palaeognathae (ostriches and kin), Galloanserae (landfowl and waterfowl) and Neoaves (all other extant birds)-are unknown from the Mesozoic era. As a result, key questions related to the ecology(4,5), biogeography(3,6,7) and divergence times(1,8-10) of ancestral crown birds remain unanswered. Here we report a new Mesozoic fossil that occupies a position close to the last common ancestor of Galloanserae and fills a key phylogenetic gap in the early evolutionary history of crown birds(10,11). Asteriornis maastrichtensis, gen. et sp. nov., from the Maastrichtian age of Belgium (66.8-66.7 million years ago), is represented by a nearly complete, three-dimensionally preserved skull and associated postcranial elements. The fossil represents one of the only well-supported crown birds from the Mesozoic era(12), and is the first Mesozoic crown bird with well-represented cranial remains. Asteriornis maastrichtensis exhibits a previously undocumented combination of galliform (landfowl)-like and anseriform (waterfowl)-like features, and its presence alongside a previously reported Ichthyornis-like taxon from the same locality(13) provides direct evidence of the co-occurrence of crown birds and avialan stem birds. Its occurrence in the Northern Hemisphere challenges biogeographical hypotheses of a Gondwanan origin of crown birds(3), and its relatively small size and possible littoral ecology may corroborate proposed ecological filters(4,5,9) that influenced the persistence of crown birds through the end-Cretaceous mass extinction.


A newly discovered fossil from the Cretaceous of Belgium is the oldest modern bird ever found, showing a unique combination of features and suggesting attributes shared by avian survivors of the end-Cretaceous extinction.


  
The art of co-creation: An intervention in the philosophy of ecological economics 期刊论文
ECOLOGICAL ECONOMICS, 2020, 169
作者:  Herrmann-Pillath, Carsten
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/02
Co-creation  Co-evolution  Post-normal science  Art  German idealism  Performativity  Climate modelling  Valuation  
Asymmetry in the dominant co-variation mode of boreal summer monsoon rainfall regulated by the ENSO evolution 期刊论文
CLIMATE DYNAMICS, 2019, 53: 6379-6396
作者:  Hao, Yuqian;  Liu, Boqi;  Zhu, Congwen;  He, Bian
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
Co-variation of boreal summer monsoon  Interannual variability  Seasonal evolution of ENSO  Asymmetric pattern  
Co-creation, co-evolution and co-governance: understanding green businesses and urban transformations 期刊论文
CLIMATIC CHANGE, 2019
作者:  Ma, Yuge;  Thornton, Thomas F.;  Mangalagiu, Diana;  Lan, Jing;  Hestad, Dina;  Cappello, Elena Apostoli;  Van der Leeuw, Sander
收藏  |  浏览/下载:9/0  |  提交时间:2019/11/27
Green business  Urban transformations  Social innovation  Collaborative governance  Value co-creation  Co-evolution  Cities  
Nonlinear frequency-dependent selection promotes long-term coexistence between bacteria species 期刊论文
ECOLOGY LETTERS, 2019, 22 (8) : 1192-1202
作者:  Harmand, Noemie;  Federico, Valentine;  Hindre, Thomas;  Lenormand, Thomas
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/27
Citrobacter freundii  Escherichia coli  experimental co-evolution  Nalidixic acid  negative frequency-dependent selection  NFDS  polymorphism  
Rebound Effects in Practice: An Invitation to Consider Rebound From a Practice Theory Perspective 期刊论文
ECOLOGICAL ECONOMICS, 2018, 154: 14-21
作者:  Sonnberger, Marco;  Gross, Matthias
收藏  |  浏览/下载:0/0  |  提交时间:2019/04/09
Rebound effects  Practice theory  Co-evolution  Consumption  
Community evolution increases plant productivity at low diversity 期刊论文
ECOLOGY LETTERS, 2018, 21 (1) : 128-137
作者:  van Moorsel, Sofia J.;  Hahl, Terhi;  Wagg, Cameron;  De Deyn, Gerlinde B.;  Flynn, Dan F. B.;  Zuppinger-Dingley, Debra;  Schmid, Bernhard
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
Biodiversity  community evolution  co-selection  ecosystem functioning  grassland species  Jena Experiment  plant productivity  soil organisms