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Intensive farming drives long-term shifts in avian community composition 期刊论文
NATURE, 2020, 579 (7799) : 393-+
作者:  Oh, Eugene;  Mark, Kevin G.;  Mocciaro, Annamaria;  Watson, Edmond R.;  Prabu, J. Rajan;  Cha, Denny D.;  Kampmann, Martin;  Gamarra, Nathan;  Zhou, Coral Y.;  Rape, Michael
收藏  |  浏览/下载:16/0  |  提交时间:2020/05/13

Variation in vegetation and climate affects the long-term changes in bird communities in intensive-agriculture habitats, but not in diversified-agriculture or natural-forest habitats, by changing the local colonization and extinction rates.


Agricultural practices constitute both the greatest cause of biodiversity loss and the greatest opportunity for conservation(1,2), given the shrinking scope of protected areas in many regions. Recent studies have documented the high levels of biodiversity-across many taxa and biomes-that agricultural landscapes can support over the short term(1,3,4). However, little is known about the long-term effects of alternative agricultural practices on ecological communities(4,5) Here we document changes in bird communities in intensive-agriculture, diversified-agriculture and natural-forest habitats in 4 regions of Costa Rica over a period of 18 years. Long-term directional shifts in bird communities were evident in intensive- and diversified-agricultural habitats, but were strongest in intensive-agricultural habitats, where the number of endemic and International Union for Conservation of Nature (IUCN) Red List species fell over time. All major guilds, including those involved in pest control, pollination and seed dispersal, were affected. Bird communities in intensive-agricultural habitats proved more susceptible to changes in climate, with hotter and drier periods associated with greater changes in community composition in these settings. These findings demonstrate that diversified agriculture can help to alleviate the long-term loss of biodiversity outside natural protected areas(1).


  
Giant virus diversity and host interactions through global metagenomics 期刊论文
NATURE, 2020: 1-+
作者:  Su, Jie;  Morgani, Sophie M.;  David, Charles J.;  Wang, Qiong;  Er, Ekrem Emrah;  Huang, Yun-Han;  Basnet, Harihar;  Zou, Yilong;  Shu, Weiping;  Soni, Rajesh K.;  Hendrickson, Ronald C.;  Hadjantonakis, Anna-Katerina;  Massague, Joan
收藏  |  浏览/下载:21/0  |  提交时间:2020/07/03

Analysis of metagenomics data revealed that large and giant viruses are globally widely distributed and are associated with most major eukaryotic lineages.


Our current knowledge about nucleocytoplasmic large DNA viruses (NCLDVs) is largely derived from viral isolates that are co-cultivated with protists and algae. Here we reconstructed 2,074 NCLDV genomes from sampling sites across the globe by building on the rapidly increasing amount of publicly available metagenome data. This led to an 11-fold increase in phylogenetic diversity and a parallel 10-fold expansion in functional diversity. Analysis of 58,023 major capsid proteins from large and giant viruses using metagenomic data revealed the global distribution patterns and cosmopolitan nature of these viruses. The discovered viral genomes encoded a wide range of proteins with putative roles in photosynthesis and diverse substrate transport processes, indicating that host reprogramming is probably a common strategy in the NCLDVs. Furthermore, inferences of horizontal gene transfer connected viral lineages to diverse eukaryotic hosts. We anticipate that the global diversity of NCLDVs that we describe here will establish giant viruses-which are associated with most major eukaryotic lineages-as important players in ecosystems across Earth'  s biomes.


  
Dams have varying impacts on fish communities across latitudes: a quantitative synthesis 期刊论文
ECOLOGY LETTERS, 2019, 22 (9) : 1501-1516
作者:  Turgeon, Katrine;  Turpin, Christian;  Gregory-Eaves, Irene
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
Biomes  fish  fluvial specialist  hydroelectricity  impoundment  invasive  meta-analysis  reservoirs  species assemblages  trophic level position  tropical  
Pre-stratified modelling plus residuals kriging reduces the uncertainty of aboveground biomass estimation and spatial distribution in heterogeneous savannas and forest environments 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 445: 96-109
作者:  Silveira, Eduarda M. O.;  Espirito Santo, Fernando D.;  Wulder, Michael A.;  Acerbi Junior, Fausto W.;  Carvalho, Monica C.;  Mello, Carlos R.;  Mello, Jose M.;  Shimabukuro, Yosio E.;  Nunes Santos Terra, Marcela Castro;  Carvalho, Luis Marcelo T.;  Scolforo, Jose R. S.
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
AGB  Random forests  Brazilian biomes  Climate  Seasonality  
Projected timing of perceivable changes in climate extremes for terrestrial and marine ecosystems 期刊论文
GLOBAL CHANGE BIOLOGY, 2018, 24 (10) : 4696-4708
作者:  Tan, Xuezhi;  Gan, Thian Yew;  Horton, Daniel E.
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
climate change  climate extremes  marine realms  terrestrial biomes  time of emergence  
Carbon stock classification for tropical forests in Brazil: Understanding the effect of stand and climate variables 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2017, 404
作者:  David, Hassan Camil;  Gomes de Araujo, Emanuel Jose;  Morais, Vinicius Augusto;  Soares Scolforo, Jose Roberto;  Marques, Jair Mendes;  Netto, Sylvio Pellico;  MacFarlane, David W.
收藏  |  浏览/下载:8/0  |  提交时间:2019/04/09
Discriminant analysis  Stem carbon  Temperature and precipitation  Mean diameter and height  Brazilian biomes