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Combined liver–cytokine humanization comes to the rescue of circulating human red blood cells 期刊论文
Science, 2021
作者:  Yuanbin Song;  Liang Shan;  Rana Gbyli;  Wei Liu;  Till Strowig;  Amisha Patel;  Xiaoying Fu;  Xiaman Wang;  Mina L. Xu;  Yimeng Gao;  Ashley Qin;  Emanuela M. Bruscia;  Toma Tebaldi;  Giulia Biancon;  Padmavathi Mamillapalli;  David Urbonas;  Elizabeth Eynon;  David G. Gonzalez;  Jie Chen;  Diane S. Krause;  Jonathan Alderman;  Stephanie Halene;  Richard A. Flavell
收藏  |  浏览/下载:18/0  |  提交时间:2021/03/12
Global COVID-19 pandemic demands joint interventions for the suppression of future waves 期刊论文
Proceedings of the National Academy of Sciences, 2020
作者:  Ruiyun Li;  Bin Chen;  Tao Zhang;  Zhehao Ren;  Yimeng Song;  Yixiong Xiao;  Lin Hou;  Jun Cai;  Bo Xu;  Miao Li;  Karen Kie Yan Chan;  Ying Tu;  Mu Yang;  Jing Yang;  Zhaoyang Liu;  Chong Shen;  Che Wang;  Lei Xu;  Qiyong Liu;  Shuming Bao;  Jianqin Zhang;  Yuhai Bi;  Yuqi Bai;  Ke Deng;  Wusheng Zhang;  Wenyu Huang;  Jason D. Whittington;  Nils Chr. Stenseth;  Dabo Guan;  Peng Gong;  Bing Xu
收藏  |  浏览/下载:13/0  |  提交时间:2020/10/12
An investigation of transmission control measures during the first 50 days of the COVID-19 epidemic in China 期刊论文
Science, 2020
作者:  Huaiyu Tian;  Yonghong Liu;  Yidan Li;  Chieh-Hsi Wu;  Bin Chen;  Moritz U. G. Kraemer;  Bingying Li;  Jun Cai;  Bo Xu;  Qiqi Yang;  Ben Wang;  Peng Yang;  Yujun Cui;  Yimeng Song;  Pai Zheng;  Quanyi Wang;  Ottar N. Bjornstad;  Ruifu Yang;  Bryan T. Grenfell;  Oliver G. Pybus;  Christopher Dye
收藏  |  浏览/下载:9/0  |  提交时间:2020/05/13
A metabolic pathway for bile acid dehydroxylation by the gut microbiome 期刊论文
NATURE, 2020
作者:  Zhong, Miao;  Tran, Kevin;  Min, Yimeng;  Wang, Chuanhao;  Wang, Ziyun;  Dinh, Cao-Thang;  De Luna, Phil;  Yu, Zongqian;  Rasouli, Armin Sedighian;  Brodersen, Peter;  Sun, Song;  Voznyy, Oleksandr;  Tan, Chih-Shan;  Askerka, Mikhail;  Che, Fanglin;  Liu, Min;  Seifitokaldani, Ali;  Pang, Yuanjie;  Lo, Shen-Chuan;  Ip, Alexander;  Ulissi, Zachary;  Sargent, Edward H.
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

The biosynthetic pathway that produces the secondary bile acids DCA and LCA in human gut microbes has been fully characterized, engineered into another bacterial host, and used to confer DCA production in germ-free mice-an important proof-of-principle for the engineering of gut microbial pathways.


The gut microbiota synthesize hundreds of molecules, many of which influence host physiology. Among the most abundant metabolites are the secondary bile acids deoxycholic acid (DCA) and lithocholic acid (LCA), which accumulate at concentrations of around 500 mu M and are known to block the growth ofClostridium difficile(1), promote hepatocellular carcinoma(2)and modulate host metabolism via the G-protein-coupled receptor TGR5 (ref.(3)). More broadly, DCA, LCA and their derivatives are major components of the recirculating pool of bile acids(4)  the size and composition of this pool are a target of therapies for primary biliary cholangitis and nonalcoholic steatohepatitis. Nonetheless, despite the clear impact of DCA and LCA on host physiology, an incomplete knowledge of their biosynthetic genes and a lack of genetic tools to enable modification of their native microbial producers limit our ability to modulate secondary bile acid levels in the host. Here we complete the pathway to DCA and LCA by assigning and characterizing enzymes for each of the steps in its reductive arm, revealing a strategy in which the A-B rings of the steroid core are transiently converted into an electron acceptor for two reductive steps carried out by Fe-S flavoenzymes. Using anaerobic in vitro reconstitution, we establish that a set of six enzymes is necessary and sufficient for the eight-step conversion of cholic acid to DCA. We then engineer the pathway intoClostridium sporogenes, conferring production of DCA and LCA on a nonproducing commensal and demonstrating that a microbiome-derived pathway can be expressed and controlled heterologously. These data establish a complete pathway to two central components of the bile acid pool.


  
Improved 1 km resolution PM2.5 estimates across China using enhanced space-time extremely randomized trees 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2020, 20 (6) : 3273-3289
作者:  Wei, Jing;  Li, Zhanqing;  Cribb, Maureen;  Huang, Wei;  Xue, Wenhao;  Sun, Lin;  Guo, Jianping;  Peng, Yiran;  Li, Jing;  Lyapustin, Alexei;  Liu, Lei;  Wu, Hao;  Song, Yimeng
收藏  |  浏览/下载:26/0  |  提交时间:2020/07/02