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Response to Charlier et al.: Climate–Disease Feedbacks Mediated by Livestock Methane Emissions Are Plausible 期刊论文
Trends in Ecology & Evolution\, 2021
作者:  Vanessa O. Ezenwa:David J. Civitello:Aimée T. Classen:Brandon T. Barton:Daniel J. Becker:Maris Brenn-White:Sharon L. Deem:Susan Kutz:Matthew Malishev:Rachel M. Penczykowski:Daniel L. Preston:J. Trevor Vannatta:Amanda M. Koltz
收藏  |  浏览/下载:6/0  |  提交时间:2021/05/21
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms 期刊论文
Science, 2020
作者:  David E. Gordon;  Joseph Hiatt;  Mehdi Bouhaddou;  Veronica V. Rezelj;  Svenja Ulferts;  Hannes Braberg;  Alexander S. Jureka;  Kirsten Obernier;  Jeffrey Z. Guo;  Jyoti Batra;  Robyn M. Kaake;  Andrew R. Weckstein;  Tristan W. Owens;  Meghna Gupta;  Sergei Pourmal;  Erron W. Titus;  Merve Cakir;  Margaret Soucheray;  Michael McGregor;  Zeynep Cakir;  Gwendolyn Jang;  Matthew J. O’Meara;  Tia A. Tummino;  Ziyang Zhang;  Helene Foussard;  Ajda Rojc;  Yuan Zhou;  Dmitry Kuchenov;  Ruth Hüttenhain;  Jiewei Xu;  Manon Eckhardt;  Danielle L. Swaney;  Jacqueline M. Fabius;  Manisha Ummadi;  Beril Tutuncuoglu;  Ujjwal Rathore;  Maya Modak;  Paige Haas;  Kelsey M. Haas;  Zun Zar Chi Naing;  Ernst H. Pulido;  Ying Shi;  Inigo Barrio-Hernandez;  Danish Memon;  Eirini Petsalaki;  Alistair Dunham;  Miguel Correa Marrero;  David Burke;  Cassandra Koh;  Thomas Vallet;  Jesus A. Silvas;  Caleigh M. Azumaya;  Christian Billesbølle;  Axel F. Brilot;  Melody G. Campbell;  Amy Diallo;  Miles Sasha Dickinson;  Devan Diwanji;  Nadia Herrera;  Nick Hoppe;  Huong T. Kratochvil;  Yanxin Liu;  Gregory E. Merz;  Michelle Moritz;  Henry C. Nguyen;  Carlos Nowotny;  Cristina Puchades;  Alexandrea N. Rizo;  Ursula Schulze-Gahmen;  Amber M. Smith;  Ming Sun;  Iris D. Young;  Jianhua Zhao;  Daniel Asarnow;  Justin Biel;  Alisa Bowen;  Julian R. Braxton;  Jen Chen;  Cynthia M. Chio;  Un Seng Chio;  Ishan Deshpande;  Loan Doan;  Bryan Faust;  Sebastian Flores;  Mingliang Jin;  Kate Kim;  Victor L. Lam;  Fei Li;  Junrui Li;  Yen-Li Li;  Yang Li;  Xi Liu;  Megan Lo;  Kyle E. Lopez;  Arthur A. Melo;  Frank R. Moss;  Phuong Nguyen;  Joana Paulino;  Komal Ishwar Pawar;  Jessica K. Peters;  Thomas H. Pospiech;  Maliheh Safari;  Smriti Sangwan;  Kaitlin Schaefer;  Paul V. Thomas;  Aye C. Thwin;  Raphael Trenker;  Eric Tse;  Tsz Kin Martin Tsui;  Feng Wang;  Natalie Whitis;  Zanlin Yu;  Kaihua Zhang;  Yang Zhang;  Fengbo Zhou;  Daniel Saltzberg;  QCRG Structural Biology Consortium12†;  Anthony J. Hodder;  Amber S. Shun-Shion;  Daniel M. Williams;  Kris M. White;  Romel Rosales;  Thomas Kehrer;  Lisa Miorin;  Elena Moreno;  Arvind H. Patel;  Suzannah Rihn;  Mir M. Khalid;  Albert Vallejo-Gracia;  Parinaz Fozouni;  Camille R. Simoneau;  Theodore L. Roth;  David Wu;  Mohd Anisul Karim;  Maya Ghoussaini;  Ian Dunham;  Francesco Berardi;  Sebastian Weigang;  Maxime Chazal;  Jisoo Park;  James Logue;  Marisa McGrath;  Stuart Weston;  Robert Haupt;  C. James Hastie;  Matthew Elliott;  Fiona Brown;  Kerry A. Burness;  Elaine Reid;  Mark Dorward;  Clare Johnson;  Stuart G. Wilkinson;  Anna Geyer;  Daniel M. Giesel;  Carla Baillie;  Samantha Raggett;  Hannah Leech;  Rachel Toth;  Nicola Goodman;  Kathleen C. Keough;  Abigail L. Lind;  Zoonomia Consortium‡;  Reyna J. Klesh;  Kafi R. Hemphill;  Jared Carlson-Stevermer;  Jennifer Oki;  Kevin Holden;  Travis Maures;  Katherine S. Pollard;  Andrej Sali;  David A. Agard;  Yifan Cheng;  James S. Fraser;  Adam Frost;  Natalia Jura;  Tanja Kortemme;  Aashish Manglik;  Daniel R. Southworth;  Robert M. Stroud;  Dario R. Alessi;  Paul Davies;  Matthew B. Frieman;  Trey Ideker;  Carmen Abate;  Nolwenn Jouvenet;  Georg Kochs;  Brian Shoichet;  Melanie Ott;  Massimo Palmarini;  Kevan M. Shokat;  Adolfo García-Sastre;  Jeremy A. Rassen;  Robert Grosse;  Oren S. Rosenberg;  Kliment A. Verba;  Christopher F. Basler;  Marco Vignuzzi;  Andrew A. Peden;  Pedro Beltrao;  Nevan J. Krogan
收藏  |  浏览/下载:25/0  |  提交时间:2020/12/07
Elements of disease in a changing world: modelling feedbacks between infectious disease and ecosystems 期刊论文
Ecology Letters, 2020
作者:  Elizabeth T. Borer;  Lale Asik;  Rebecca A. Everett;  Thijs Frenken;  Angelica L. Gonzalez;  Rachel E. Paseka;  Angela Peace;  Eric W. Seabloom;  Alexander T. Strauss;  Dedmer B. Van de Waal;  Lauren A. White
收藏  |  浏览/下载:6/0  |  提交时间:2020/10/20
Infectious Diseases, Livestock, and Climate: A Vicious Cycle? 期刊论文
Trends in Ecology & Evolution\, 2020
作者:  Vanessa O. Ezenwa:David J. Civitello:Brandon T. Barton:Daniel J. Becker:Maris Brenn-White:Aimée T. Classen:Sharon L. Deem:Zoë E. Johnson:Susan Kutz:Matthew Malishev:Rachel M. Penczykowski:Daniel L. Preston:J. Trevor Vannatta:Amanda M. Koltz
收藏  |  浏览/下载:11/0  |  提交时间:2020/10/12
Disease-mediated ecosystem services: Pathogens, plants, and people 期刊论文
TRENDS IN ECOLOGY & EVOLUTION, 2020, 35 (8) : 731-743
作者:  Paseka, Rachel E.;  White, Lauren A.;  Van de Waal, Dedmer B.;  Strauss, Alex T.;  Gonzalez, Angelica L.;  Everett, Rebecca A.;  Peace, Angela;  Seabloom, Eric W.;  Frenken, Thijs;  Borer, Elizabeth T.
收藏  |  浏览/下载:10/0  |  提交时间:2020/06/22
The Brewer-Dobson Circulation During the Last Glacial Maximum 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2020, 47 (5)
作者:  Fu, Qiang;  White, Rachel H.;  Wang, Mingcheng;  Alexander, Becky;  Solomon, Susan;  Gettelman, Andrew;  Battisti, David S.;  Lin, Pu
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/02
An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity 期刊论文
NATURE, 2020, 577 (7791) : 572-+
作者:  Athukoralage, Januka S.;  McMahon, Stephen A.;  Zhang, Changyi;  Grueschow, Sabine;  Graham, Shirley;  Krupovic, Mart;  Whitaker, Rachel J.;  Gloster, Tracey M.;  White, Malcolm F.
收藏  |  浏览/下载:5/0  |  提交时间:2020/07/03

The CRISPR system in bacteria and archaea provides adaptive immunity against mobile genetic elements. Type III CRISPR systems detect viral RNA, resulting in the activation of two regions of the Cas10 protein: an HD nuclease domain (which degrades viral DNA)(1,2) and a cyclase domain (which synthesizes cyclic oligoadenylates from ATP)(3-5). Cyclic oligoadenylates in turn activate defence enzymes with a CRISPR-associated Rossmann fold domain(6), sculpting a powerful antiviral response(7-10) that can drive viruses to extinction(7,8). Cyclic nucleotides are increasingly implicated in host-pathogen interactions(11-13). Here we identify a new family of viral anti-CRISPR (Acr) enzymes that rapidly degrade cyclic tetra-adenylate (cA(4)). The viral ring nuclease AcrIII-1 is widely distributed in archaeal and bacterial viruses and in proviruses. The enzyme uses a previously unknown fold to bind cA(4) specifically, and a conserved active site to rapidly cleave this signalling molecule, allowing viruses to neutralize the type III CRISPR defence system. The AcrIII-1 family has a broad host range, as it targets cA(4) signalling molecules rather than specific CRISPR effector proteins. Our findings highlight the crucial role of cyclic nucleotide signalling in the conflict between viruses and their hosts.


Bacteria and archaea use cyclic oligoadenylate molecules as part of the CRISPR system for antiviral defence  here, a family of viral enzymes that rapidly degrades cyclic oligoadenylates is identified and biochemically and structurally described.


  
AQP5 enriches for stem cells and cancer origins in the distal stomach 期刊论文
NATURE, 2020, 578 (7795) : 437-+
作者:  Athukoralage, Januka S.;  McMahon, Stephen A.;  Zhang, Changyi;  Grueschow, Sabine;  Graham, Shirley;  Krupovic, Mart;  Whitaker, Rachel J.;  Gloster, Tracey M.;  White, Malcolm F.
收藏  |  浏览/下载:17/0  |  提交时间:2020/07/03

LGR5 marks resident adult epithelial stem cells at the gland base in the mouse pyloric stomach(1), but the identity of the equivalent human stem cell population remains unknown owing to a lack of surface markers that facilitate its prospective isolation and validation. In mouse models of intestinal cancer, LGR5(+) intestinal stem cells are major sources of cancer following hyperactivation of the WNT pathway(2). However, the contribution of pyloric LGR5(+) stem cells to gastric cancer following dysregulation of the WNT pathway-a frequent event in gastric cancer in humans(3)-is unknown. Here we use comparative profiling of LGR5(+) stem cell populations along the mouse gastrointestinal tract to identify, and then functionally validate, the membrane protein AQP5 as a marker that enriches for mouse and human adult pyloric stem cells. We show that stem cells within the AQP5(+) compartment are a source of WNT-driven, invasive gastric cancer in vivo, using newly generated Aqp5-creERT2 mouse models. Additionally, tumour-resident AQP5(+) cells can selectively initiate organoid growth in vitro, which indicates that this population contains potential cancer stem cells. In humans, AQP5 is frequently expressed in primary intestinal and diffuse subtypes of gastric cancer (and in metastases of these subtypes), and often displays altered cellular localization compared with healthy tissue. These newly identified markers and mouse models will be an invaluable resource for deciphering the early formation of gastric cancer, and for isolating and characterizing human-stomach stem cells as a prerequisite for harnessing the regenerative-medicine potential of these cells in the clinic.


AQP5 is identified as a marker for pyloric stem cells in humans and mice, and stem cells in the AQP5(+) compartment are shown to be a source of invasive gastric cancer in mouse models.


  
The Importance of Greenland in Setting the Northern Preferred Position of the North Atlantic Eddy-Driven Jet 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2019, 46 (23) : 14126-14134
作者:  White, Rachel H.;  Hilgenbrink, Casey;  Sheshadri, Aditi
收藏  |  浏览/下载:5/0  |  提交时间:2020/02/17
Jet Latitude Index  Weather regimes  North Atlantic atmospheric circulation  Greenland  CMIP5 biases  Jet preferred positions  
Kilauea lava fuels phytoplankton bloom in the North Pacific Ocean 期刊论文
SCIENCE, 2019, 365 (6457) : 1040-+
作者:  Wilson, Samuel T.;  Hawco, Nicholas J.;  Armbrust, E. Virginia;  Barone, Benedetto;  Bjorkman, Karin M.;  Boysen, Angela K.;  Burgos, Macarena;  Burrell, Timothy J.;  Casey, John R.;  DeLong, Edward F.;  Dugenne, Mathilde;  Dutkiewicz, Stephanie;  Dyhrman, Sonya T.;  Ferron, Sara;  Follows, Michael J.;  Foreman, Rhea K.;  Funkey, Carolina P.;  Harke, Matthew J.;  Henke, Britt A.;  Hill, Christopher N.;  Hynes, Annette M.;  Ingalls, Anitra E.;  Jahn, Oliver;  Kelly, Rachel L.;  Knapp, Angela N.;  Letelier, Ricardo M.;  Ribalet, Francois;  Shimabukuro, Eric M.;  Tabata, Ryan K. S.;  Turk-Kubo, Kendra A.;  White, Angelicque E.;  Zehr, Jonathan P.;  John, Seth;  Karl, David M.
收藏  |  浏览/下载:13/0  |  提交时间:2019/11/27