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Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms 期刊论文
Science, 2020
作者:  David E. Gordon;  Joseph Hiatt;  Mehdi Bouhaddou;  Veronica V. Rezelj;  Svenja Ulferts;  Hannes Braberg;  Alexander S. Jureka;  Kirsten Obernier;  Jeffrey Z. Guo;  Jyoti Batra;  Robyn M. Kaake;  Andrew R. Weckstein;  Tristan W. Owens;  Meghna Gupta;  Sergei Pourmal;  Erron W. Titus;  Merve Cakir;  Margaret Soucheray;  Michael McGregor;  Zeynep Cakir;  Gwendolyn Jang;  Matthew J. O’Meara;  Tia A. Tummino;  Ziyang Zhang;  Helene Foussard;  Ajda Rojc;  Yuan Zhou;  Dmitry Kuchenov;  Ruth Hüttenhain;  Jiewei Xu;  Manon Eckhardt;  Danielle L. Swaney;  Jacqueline M. Fabius;  Manisha Ummadi;  Beril Tutuncuoglu;  Ujjwal Rathore;  Maya Modak;  Paige Haas;  Kelsey M. Haas;  Zun Zar Chi Naing;  Ernst H. Pulido;  Ying Shi;  Inigo Barrio-Hernandez;  Danish Memon;  Eirini Petsalaki;  Alistair Dunham;  Miguel Correa Marrero;  David Burke;  Cassandra Koh;  Thomas Vallet;  Jesus A. Silvas;  Caleigh M. Azumaya;  Christian Billesbølle;  Axel F. Brilot;  Melody G. Campbell;  Amy Diallo;  Miles Sasha Dickinson;  Devan Diwanji;  Nadia Herrera;  Nick Hoppe;  Huong T. Kratochvil;  Yanxin Liu;  Gregory E. Merz;  Michelle Moritz;  Henry C. Nguyen;  Carlos Nowotny;  Cristina Puchades;  Alexandrea N. Rizo;  Ursula Schulze-Gahmen;  Amber M. Smith;  Ming Sun;  Iris D. Young;  Jianhua Zhao;  Daniel Asarnow;  Justin Biel;  Alisa Bowen;  Julian R. Braxton;  Jen Chen;  Cynthia M. Chio;  Un Seng Chio;  Ishan Deshpande;  Loan Doan;  Bryan Faust;  Sebastian Flores;  Mingliang Jin;  Kate Kim;  Victor L. Lam;  Fei Li;  Junrui Li;  Yen-Li Li;  Yang Li;  Xi Liu;  Megan Lo;  Kyle E. Lopez;  Arthur A. Melo;  Frank R. Moss;  Phuong Nguyen;  Joana Paulino;  Komal Ishwar Pawar;  Jessica K. Peters;  Thomas H. Pospiech;  Maliheh Safari;  Smriti Sangwan;  Kaitlin Schaefer;  Paul V. Thomas;  Aye C. Thwin;  Raphael Trenker;  Eric Tse;  Tsz Kin Martin Tsui;  Feng Wang;  Natalie Whitis;  Zanlin Yu;  Kaihua Zhang;  Yang Zhang;  Fengbo Zhou;  Daniel Saltzberg;  QCRG Structural Biology Consortium12†;  Anthony J. Hodder;  Amber S. Shun-Shion;  Daniel M. Williams;  Kris M. White;  Romel Rosales;  Thomas Kehrer;  Lisa Miorin;  Elena Moreno;  Arvind H. Patel;  Suzannah Rihn;  Mir M. Khalid;  Albert Vallejo-Gracia;  Parinaz Fozouni;  Camille R. Simoneau;  Theodore L. Roth;  David Wu;  Mohd Anisul Karim;  Maya Ghoussaini;  Ian Dunham;  Francesco Berardi;  Sebastian Weigang;  Maxime Chazal;  Jisoo Park;  James Logue;  Marisa McGrath;  Stuart Weston;  Robert Haupt;  C. James Hastie;  Matthew Elliott;  Fiona Brown;  Kerry A. Burness;  Elaine Reid;  Mark Dorward;  Clare Johnson;  Stuart G. Wilkinson;  Anna Geyer;  Daniel M. Giesel;  Carla Baillie;  Samantha Raggett;  Hannah Leech;  Rachel Toth;  Nicola Goodman;  Kathleen C. Keough;  Abigail L. Lind;  Zoonomia Consortium‡;  Reyna J. Klesh;  Kafi R. Hemphill;  Jared Carlson-Stevermer;  Jennifer Oki;  Kevin Holden;  Travis Maures;  Katherine S. Pollard;  Andrej Sali;  David A. Agard;  Yifan Cheng;  James S. Fraser;  Adam Frost;  Natalia Jura;  Tanja Kortemme;  Aashish Manglik;  Daniel R. Southworth;  Robert M. Stroud;  Dario R. Alessi;  Paul Davies;  Matthew B. Frieman;  Trey Ideker;  Carmen Abate;  Nolwenn Jouvenet;  Georg Kochs;  Brian Shoichet;  Melanie Ott;  Massimo Palmarini;  Kevan M. Shokat;  Adolfo García-Sastre;  Jeremy A. Rassen;  Robert Grosse;  Oren S. Rosenberg;  Kliment A. Verba;  Christopher F. Basler;  Marco Vignuzzi;  Andrew A. Peden;  Pedro Beltrao;  Nevan J. Krogan
收藏  |  浏览/下载:25/0  |  提交时间:2020/12/07
Controls on surface water carbonate chemistry along North American ocean margins 期刊论文
NATURE COMMUNICATIONS, 2020, 11 (1)
作者:  Cai, Wei-Jun;  Xu, Yuan-Yuan;  Feely, Richard A.;  Wanninkhof, Rik;  Jonsson, Bror;  Alin, Simone R.;  Barbero, Leticia;  Cross, Jessica N.;  Azetsu-Scott, Kumiko;  Fassbender, Andrea J.;  Carter, Brendan R.;  Jiang, Li-Qing;  Pepin, Pierre;  Chen, Baoshan;  Hussain, Najid;  Reimer, Janet J.;  Xue, Liang;  Salisbury, Joseph E.;  Martin Hernandez-Ayon, Jose;  Langdon, Chris;  Li, Qian;  Sutton, Adrienne J.;  Chen, Chen-Tung A.;  Gledhill, Dwight K.
收藏  |  浏览/下载:14/0  |  提交时间:2020/06/09
Anti-PfGARP activates programmed cell death of parasites and reduces severe malaria 期刊论文
NATURE, 2020
作者:  Rauch, Jennifer N.;  Luna, Gabriel;  Guzman, Elmer;  Audouard, Morgane;  Challis, Collin;  Sibih, Youssef E.;  Leshuk, Carolina;  Hernandez, Israel;  Wegmann, Susanne;  Hyman, Bradley T.;  Gradinaru, Viviana;  Kampmann, Martin;  Kosik, Kenneth S.
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

Malaria caused by Plasmodium falciparum remains the leading single-agent cause of mortality in children(1), yet the promise of an effective vaccine has not been fulfilled. Here, using our previously described differential screening method to analyse the proteome of blood-stage P. falciparum parasites(2), we identify P. falciparum glutamic-acid-rich protein (PfGARP) as a parasite antigen that is recognized by antibodies in the plasma of children who are relatively resistant-but not those who are susceptible-to malaria caused by P. falciparum. PfGARP is a parasite antigen of 80 kDa that is expressed on the exofacial surface of erythrocytes infected by early-to-late-trophozoite-stage parasites. We demonstrate that antibodies against PfGARP kill trophozoite-infected erythrocytes in culture by inducing programmed cell death in the parasites, and that vaccinating non-human primates with PfGARP partially protects against a challenge with P. falciparum. Furthermore, our longitudinal cohort studies showed that, compared to individuals who had naturally occurring anti-PfGARP antibodies, Tanzanian children without anti-PfGARP antibodies had a 2.5-fold-higher risk of severe malaria and Kenyan adolescents and adults without these antibodies had a twofold-higher parasite density. By killing trophozoite-infected erythrocytes, PfGARP could synergize with other vaccines that target parasite invasion of hepatocytes or the invasion of and egress from erythrocytes.


Antibodies against Plasmodium falciparum glutamic-acid-rich protein (PfGARP), an antigen expressed on the surface of infected red blood cells, kill P. falciparum parasites by inducing programmed cell death and reduce the risk of severe malaria.


  
Detection of metastable electronic states by Penning trap mass spectrometry 期刊论文
NATURE, 2020, 581 (7806) : 42-+
作者:  Rauch, Jennifer N.;  Luna, Gabriel;  Guzman, Elmer;  Audouard, Morgane;  Challis, Collin;  Sibih, Youssef E.;  Leshuk, Carolina;  Hernandez, Israel;  Wegmann, Susanne;  Hyman, Bradley T.;  Gradinaru, Viviana;  Kampmann, Martin;  Kosik, Kenneth S.
收藏  |  浏览/下载:9/0  |  提交时间:2020/07/03

State-of-the-art optical clocks(1) achieve precisions of 10(-18) or better using ensembles of atoms in optical lattices(2,3) or individual ions in radio-frequency traps(4,5). Promising candidates for use in atomic clocks are highly charged ions(6) (HCIs) and nuclear transitions(7), which are largely insensitive to external perturbations and reach wavelengths beyond the optical range(8) that are accessible to frequency combs(9). However, insufficiently accurate atomic structure calculations hinder the identification of suitable transitions in HCIs. Here we report the observation of a long-lived metastable electronic state in an HCI by measuring the mass difference between the ground and excited states in rhenium, providing a non-destructive, direct determination of an electronic excitation energy. The result is in agreement with advanced calculations. We use the high-precision Penning trap mass spectrometer PENTATRAP to measure the cyclotron frequency ratio of the ground state to the metastable state of the ion with a precision of 10(-11)-an improvement by a factor of ten compared with previous measurements(10,11). With a lifetime of about 130 days, the potential soft-X-ray frequency reference at 4.96 x 10(16) hertz (corresponding to a transition energy of 202 electronvolts) has a linewidth of only 5 x 10(-8) hertz and one of the highest electronic quality factors (10(24)) measured experimentally so far. The low uncertainty of our method will enable searches for further soft-X-ray clock transitions(8,12) in HCIs, which are required for precision studies of fundamental physics(6).


Penning trap mass spectrometry is used to measure the electronic transition energy from a long-lived metastable state to the ground state in highly charged rhenium ions with a precision of 10(-11).


  
A giant exoplanet orbiting a very-low-mass star challenges planet formation models 期刊论文
SCIENCE, 2019, 365 (6460) : 1441-+
作者:  Morales, J. C.;  Mustill, A. J.;  Ribas, I.;  Davies, M. B.;  Reiners, A.;  Bauers, F. F.;  Kossakowski, D.;  Herrero, E.;  Rodriguez, E.;  Lopez-Gonzalez, M. J.;  Rodriguez-Lopez, C.;  Bejar, V. J. S.;  Gonzalez-Cuesta, L.;  Luque, R.;  Palle, E.;  Perger, M.;  Baroch, D.;  Johansen, A.;  Klahr, H.;  Mordasini, C.;  Anglada-Escude, G.;  Caballero, J. A.;  Cortes-Contreras, M.;  Dreizler, S.;  Lafarga, M.;  Nagel, E.;  Passegger, V. M.;  Reffert, S.;  Rosich, A.;  Schweitzer, A.;  Tal-Or, L.;  Trifonov, T.;  Zechmeister, M.;  Quirrenbach, A.;  Amado, P. J.;  Guenther, E. W.;  Hagen, H. -J.;  Henning, T.;  Jeffers, S. V.;  Kaminski, A.;  Kuester, M.;  Montes, D.;  Seifert, W.;  Abellan, F. J.;  Abril, M.;  Aceituno, J.;  Aceituno, F. J.;  Alonso-Floriano, F. J.;  Ammler-von Eiff, M.;  Antona, R.;  Arroyo-Torres, B.;  Azzaro, M.;  Barrado, D.;  Becerril-Jarque, S.;  Benitez, D.;  Berdinas, Z. M.;  Bergond, G.;  Brinkmoller, M.;  del Burgo, C.;  Burn, R.;  Calvo-Ortega, R.;  Cano, J.;  Cardenas, M. C.;  Cardona Guillen, C.;  Carro, J.;  Casa, E.;  Casanova, V.;  Casasayas-Barris, N.;  Chaturvedi, P.;  Cifuentes, C.;  Claret, A.;  Colome, J.;  Czesla, S.;  Diez-Alonso, E.;  Dorda, R.;  Emsenhuber, A.;  Fernandez, M.;  Fernandez-Martin, A.;  Ferro, I. M.;  Fuhrmeister, B.;  Galadi-Enriquez, D.;  Gallardo Cava, I.;  Garcia Vargas, M. L.;  Garcia-Piquer, A.;  Gesa, L.;  Gonzalez-Alvarez, E.;  Gonzalez Hernandez, J. I.;  Gonzalez-Peinado, R.;  Guardia, J.;  Guijarro, A.;  de Guindos, E.;  Hatzes, A. P.;  Hauschildt, P. H.;  Hedrosa, R. P.;  Hermelo, I.;  Hernandez Arabi, R.;  Hernandez Otero, F.;  Hintz, D.;  Holgado, G.;  Huber, A.;  Huke, P.;  Johnson, E. N.;  de Juan, E.;  Kehr, M.;  Kemmer, J.;  Kim, M.;  Klueter, J.;  Klutsch, A.;  Labarga, F.;  Labiche, N.;  Lalitha, S.;  Lampon, M.;  Lara, L. M.;  Launhardt, R.;  Lazaro, F. J.;  Lizon, J. -L.;  Llamas, M.;  Lodieu, N.;  Lopez del Fresno, M.;  Lopez Salas, . F.;  Lopez-Santiago, J.;  Magan Madinabeitia, H.;  Mall, U.;  Mancini, L.;  Mandel, H.;  Marfil, E.;  Marin Molina, J. . A.;  Martin, E. L.;  Martin-Fernandez, P.;  Martin-Ruiz, S.;  Martinez-Rodriguez, H.;  Marvin, C. J.;  Mirabet, E.;  Moya, A.;  Naranjo, V.;  Nelson, R. P.;  Nortmann, L.;  Nowak, G.;  Ofir, A.;  Pascua, J.;  Pavlov, A.;  Pedraz, S.;  Perez Medialdea, D.;  Perez-Calpena, A.;  Perryman, M. A. C.;  Rabaza, O.;  Ramon Ballesta, A.;  Rebolo, R.;  Redondo, P.;  Rix, H. -W.;  Rodler, F.;  Rodriguez Trinidad, A.;  Sabotta, S.;  Sadegi, S.;  Salz, M.;  Sanchez-Blanco, E.;  Sanchez Carrasco, M. A.;  Sanchez-Lopez, A.;  Sanz-Forcada, J.;  Sarkis, P.;  Sarmiento, L. F.;  Schafer, S.;  Schlecker, M.;  Schmitt, J. H. M. M.;  Schofer, P.;  Solano, E.;  Sota, A.;  Stahl, O.;  Stock, S.;  Stuber, T.;  Sturmer, J.;  Suarez, J. C.;  Tabernero, H. M.;  Tulloch, S. M.;  Veredas, G.;  Vico-Linares, J. I.;  Vilardell, F.;  Wagner, K.;  Winkler, J.;  Wolthoff, V.;  Yan, F.;  Zapatero Osorio, M. R.
收藏  |  浏览/下载:16/0  |  提交时间:2019/11/27
A precise measurement of the magnetic field in the corona of the black hole binary V404 Cygni (vol 358, pg 1299, 2017) 期刊论文
SCIENCE, 2018, 360 (6386)
作者:  Dallilar, Y.;  Eikenberry, S. S.;  Garner, A.;  Stelter, D.;  Gottlieb, A.;  Gandhi, P.;  Casella, P.;  Dhillon, V. S.;  Marsh, T. R.;  Littlefair, S. P.;  Hardy, L.;  Fender, R.;  Mooley, K.;  Walton, D. J.;  Fuerst, F.;  Bachetti, M.;  Castro-Tirado, A. J.;  Charcos, M.;  Edwards, M. L.;  Lasso-Cabrera, N. M.;  Marin-Franch, A.;  Raines, S. N.;  Ackley, K.;  Bennett, J. G.;  Cenarro, A. J.;  Chinn, B.;  Donoso, H. V.;  Frommeyer, R.;  Hanna, K.;  Herlevich, M. D.;  Julian, J.;  Miller, P.;  Mullin, S.;  Murphey, C. H.;  Packham, C.;  Varosi, F.;  Vega, C.;  Warner, C.;  Ramaprakash, A. N.;  Burse, M.;  Punnadi, S.;  Chordia, P.;  Gerarts, A.;  Martin, H. de Paz;  Calero, M. Martin;  Scarpa, R.;  Acosta, S. Fernandez;  Sanchez, W. M. Hernandez;  Siegel, B.;  Perez, F. Francisco;  Martin, H. D. Viera;  Losada, J. A. Rodriguez;  Nunez, A.;  Tejero, A.;  Gonzalez, C. E. Martin;  Rodriguez, C. Cabrera;  Molgo, J.;  Rodriguez, J. Esteban;  Caceres, J. I. Fernandez;  Garcia, L. A. Rodriguez;  Lopez, M. Huertas;  Dominguez, R.;  Gaggstatter, T.;  Lavers, A. Cabrera;  Geier, S.;  Pessev, P.;  Sarajedini, A.
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
A precise measurement of the magnetic field in the corona of the black hole binary V404 Cygni 期刊论文
SCIENCE, 2017, 358 (6368) : 1299-1302
作者:  Dallilar, Yigit;  Eikenberry, Stephen S.;  Garner, Alan;  Stelter, Richard D.;  Gottlieb, Amy;  Gandhi, Poshak;  Casella, Piergiorgio;  Dhillon, Vik S.;  Marsh, Tom R.;  Littlefair, Stuart P.;  Hardy, Liam;  Fender, Rob;  Mooley, Kunal;  Walton, Dominic J.;  Fuerst, Felix;  Bachetti, Matteo;  Castro-Tirado, A. J.;  Charcos, Miguel;  Edwards, Michelle L.;  Lasso-Cabrera, Nestor M.;  Marin-Franch, Antonio;  Raines, S. Nicholas;  Ackley, Kendall;  Bennett, John G.;  Cenarro, A. Javier;  Chinn, Brian;  Donoso, H. Veronica;  Frommeyer, Raymond;  Hanna, Kevin;  Herlevich, Michael D.;  Julian, Jeff;  Miller, Paola;  Mullin, Scott;  Murphey, Charles H.;  Packham, Chris;  Varosi, Frank;  Vega, Claudia;  Warner, Craig;  Ramaprakash, A. N.;  Burse, Mahesh;  Punnadi, Sujit;  Chordia, Pravin;  Gerarts, Andreas;  De Paz Martin, Hector;  Martin Calero, Maria;  Scarpa, Riccardo;  Acosta, Sergio Fernandez;  Hernandez Sanchez, William Miguel;  Siegel, Benjamin;  Francisco Perez, Francisco;  Viera Martin, Himar D.;  Rodriguez Losada, Jose A.;  Nunez, Agustin;  Tejero, Alvaro;  Martin Gonzalez, Carlos E.;  Cabrera Rodriguez, Cesar;  Molgo, Jordi;  Esteban Rodriguez, J.;  Fernandez Caceres, J. Israel;  Rodriguez Garcia, Luis A.;  Huertas Lopez, Manuel;  Dominguez, Raul;  Gaggstatter, Tim;  Cabrera Lavers, Antonio;  Geier, Stefan;  Pessev, Peter;  Sarajedini, Ata
收藏  |  浏览/下载:16/0  |  提交时间:2019/11/27
Ocean heat content variability and change in an ensemble of ocean reanalyses 期刊论文
CLIMATE DYNAMICS, 2017, 49 (3)
作者:  Palmer, M. D.;  Roberts, C. D.;  Balmaseda, M.;  Chang, Y. -S.;  Chepurin, G.;  Ferry, N.;  Fujii, Y.;  Good, S. A.;  Guinehut, S.;  Haines, K.;  Hernandez, F.;  Koehl, A.;  Lee, T.;  Martin, M. J.;  Masina, S.;  Masuda, S.;  Peterson, K. A.;  Storto, A.;  Toyoda, T.;  Valdivieso, M.;  Vernieres, G.;  Wang, O.;  Xue, Y.
收藏  |  浏览/下载:12/0  |  提交时间:2019/04/09
Heat content  Temperature  Variability  Climate change  Global warming  Energy budget  Ocean reanalyses  Ocean state estimation  Ocean models  Inter comparison  Ocean  Observations  Data assimilation  
The complex influence of ENSO on droughts in Ecuador 期刊论文
CLIMATE DYNAMICS, 2017, 48
作者:  Vicente-Serrano, S. M.;  Aguilar, E.;  Martinez, R.;  Martin-Hernandez, N.;  Azorin-Molina, C.;  Sanchez-Lorenzo, A.;  El Kenawy, A.;  Tomas-Burguera, M.;  Moran-Tejeda, E.;  Lopez-Moreno, J. I.;  Revuelto, J.;  Begueria, S.;  Nieto, J. J.;  Drumond, A.;  Gimeno, L.;  Nieto, R.
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
Standardized Precipitation Evapotranspiration Index (SPEI)  Drought  Ecuador  El Nino 3.4  El Nino 1+2