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Late Cretaceous neornithine from Europe illuminates the origins of crown birds 期刊论文
NATURE, 2020, 579 (7799) : 397-+
作者:  Shao, Zhengping;  Flynn, Ryan A.;  Crowe, Jennifer L.;  Zhu, Yimeng;  Liang, Jialiang;  Jiang, Wenxia;  Aryan, Fardin;  Aoude, Patrick;  Bertozzi, Carolyn R.;  Estes, Verna M.;  Lee, Brian J.;  Bhagat, Govind;  Zha, Shan;  Calo, Eliezer
收藏  |  浏览/下载:14/0  |  提交时间:2020/05/13

Our understanding of the earliest stages of crown bird evolution is hindered by an exceedingly sparse avian fossil record from the Mesozoic era. The most ancient phylogenetic divergences among crown birds are known to have occurred in the Cretaceous period(1-3), but stem-lineage representatives of the deepest subclades of crown birds-Palaeognathae (ostriches and kin), Galloanserae (landfowl and waterfowl) and Neoaves (all other extant birds)-are unknown from the Mesozoic era. As a result, key questions related to the ecology(4,5), biogeography(3,6,7) and divergence times(1,8-10) of ancestral crown birds remain unanswered. Here we report a new Mesozoic fossil that occupies a position close to the last common ancestor of Galloanserae and fills a key phylogenetic gap in the early evolutionary history of crown birds(10,11). Asteriornis maastrichtensis, gen. et sp. nov., from the Maastrichtian age of Belgium (66.8-66.7 million years ago), is represented by a nearly complete, three-dimensionally preserved skull and associated postcranial elements. The fossil represents one of the only well-supported crown birds from the Mesozoic era(12), and is the first Mesozoic crown bird with well-represented cranial remains. Asteriornis maastrichtensis exhibits a previously undocumented combination of galliform (landfowl)-like and anseriform (waterfowl)-like features, and its presence alongside a previously reported Ichthyornis-like taxon from the same locality(13) provides direct evidence of the co-occurrence of crown birds and avialan stem birds. Its occurrence in the Northern Hemisphere challenges biogeographical hypotheses of a Gondwanan origin of crown birds(3), and its relatively small size and possible littoral ecology may corroborate proposed ecological filters(4,5,9) that influenced the persistence of crown birds through the end-Cretaceous mass extinction.


A newly discovered fossil from the Cretaceous of Belgium is the oldest modern bird ever found, showing a unique combination of features and suggesting attributes shared by avian survivors of the end-Cretaceous extinction.


  
Microbiome analyses of blood and tissues suggest cancer diagnostic approach 期刊论文
NATURE, 2020, 579 (7800) : 567-+
作者:  Shao, Zhengping;  Flynn, Ryan A.;  Crowe, Jennifer L.;  Zhu, Yimeng;  Liang, Jialiang;  Jiang, Wenxia;  Aryan, Fardin;  Aoude, Patrick;  Bertozzi, Carolyn R.;  Estes, Verna M.;  Lee, Brian J.;  Bhagat, Govind;  Zha, Shan;  Calo, Eliezer
收藏  |  浏览/下载:54/0  |  提交时间:2020/07/03

Microbial nucleic acids are detected in samples of tissues and blood from more than 10,000 patients with cancer, and machine learning is used to show that these can be used to discriminate between and among different types of cancer, suggesting a new microbiome-based diagnostic approach.


Systematic characterization of the cancer microbiome provides the opportunity to develop techniques that exploit non-human, microorganism-derived molecules in the diagnosis of a major human disease. Following recent demonstrations that some types of cancer show substantial microbial contributions(1-10), we re-examined whole-genome and whole-transcriptome sequencing studies in The Cancer Genome Atlas(11) (TCGA) of 33 types of cancer from treatment-naive patients (a total of 18,116 samples) for microbial reads, and found unique microbial signatures in tissue and blood within and between most major types of cancer. These TCGA blood signatures remained predictive when applied to patients with stage Ia-IIc cancer and cancers lacking any genomic alterations currently measured on two commercial-grade cell-free tumour DNA platforms, despite the use of very stringent decontamination analyses that discarded up to 92.3% of total sequence data. In addition, we could discriminate among samples from healthy, cancer-free individuals (n = 69) and those from patients with multiple types of cancer (prostate, lung, and melanoma  100 samples in total) solely using plasma-derived, cell-free microbial nucleic acids. This potential microbiome-based oncology diagnostic tool warrants further exploration.


  
Bay Breeze and Sea Breeze Circulation Impacts on the Planetary Boundary Layer and Air Quality From an Observed and Modeled DISCOVER-AQ Texas Case Study 期刊论文
JOURNAL OF GEOPHYSICAL RESEARCH-ATMOSPHERES, 2019, 124 (13) : 7359-7378
作者:  Caicedo, V;  Rappenglueck, B.;  Cuchiara, G.;  Flynn, J.;  Ferrare, R.;  Scarino, A. J.;  Berkoff, T.;  Senff, C.;  Langford, A.;  Lefer, B.
收藏  |  浏览/下载:1/0  |  提交时间:2019/11/27
Aerosol influences on low-level clouds in the West African monsoon 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2019, 19 (13) : 8503-8522
作者:  Taylor, JonathanW.;  Haslett, Sophie L.;  Bower, Keith;  Flynn, Michael;  Crawford, Ian;  Dorsey, James;  Choularton, Tom;  Connolly, Paul J.;  Hahn, Valerian;  Voigt, Christiane;  Sauer, Daniel;  Dupuy, Regis;  Brito, Joel;  Schwarzenboeck, Alfons;  Bourriane, Thierry;  Denjean, Cyrielle;  Rosenberg, Phil;  Flamant, Cyrille;  Lee, James D.;  Vaughan, Adam R.;  Hill, Peter G.;  Brooks, Barbara;  Catoire, Valery;  Knippertz, Peter;  Coe, Hugh
收藏  |  浏览/下载:19/0  |  提交时间:2019/11/27
Impacts of Groundwater Drainage on Pentland Subsidence and Its Ecological Implications on an Atlantic Raised Bog 期刊论文
WATER RESOURCES RESEARCH, 2019, 55 (7) : 6153-6168
作者:  Regan, S.;  Flynn, R.;  Gill, L.;  Naughton, O.;  Johnston, P.
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
Late Cretaceous to Miocene volcanism, sedimentation, and upper-crustal faulting and folding in the Principal Cordillera, central Chile: Field and geochronological evidence for protracted arc volcanism and transpressive deformation 期刊论文
GEOLOGICAL SOCIETY OF AMERICA BULLETIN, 2019, 131: 252-273
作者:  Mosolf, Jesse G.;  Gans, Phillip B.;  Wyss, Andre R.;  Cottle, John M.;  Flynn, John J.
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Cloud impacts on photochemistry: building a climatology of photolysis rates from the Atmospheric Tomography mission 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2018, 18 (22) : 16809-16828
作者:  Hall, Samuel R.;  Ullmann, Kirk;  Prather, Michael J.;  Flynn, Clare M.;  Murray, Lee T.;  Fiore, Arlene M.;  Correa, Gustavo;  Strode, Sarah A.;  Steenrod, Stephen D.;  Lamarque, Jean-Francois;  Guth, Jonathan;  Josse, Beatrice;  Flemming, Johannes;  Huijnen, Vincent;  Abraham, N. Luke;  Archibald, Alex T.
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
LKB1 deficiency in T cells promotes the development of gastrointestinal polyposis 期刊论文
SCIENCE, 2018, 361 (6400) : 406-411
作者:  Poffenberger, M. C.;  Metcalfe-Roach, A.;  Aguilar, E.;  Chen, J.;  Hsu, B. E.;  Wong, A. H.;  Johnson, R. M.;  Flynn, B.;  Samborska, B.;  Ma, E. H.;  Gravel, S-P;  Tonelli, L.;  Devorkin, L.;  Kim, P.;  Hall, A.;  Izreig, S.;  Loginicheva, E.;  Beauchemin, N.;  Siegel, P. M.;  Artyomov, M. N.;  Lum, J. J.;  Zogopoulos, G.;  Blagih, J.;  Jones, R. G.
收藏  |  浏览/下载:5/0  |  提交时间:2019/11/27
Real-time detection of airborne fluorescent bioparticles in Antarctica 期刊论文
ATMOSPHERIC CHEMISTRY AND PHYSICS, 2017, 17 (23)
作者:  Crawford, Ian;  Gallagher, Martin W.;  Bower, Keith N.;  Choularton, Thomas W.;  Flynn, Michael J.;  Ruske, Simon;  Listowski, Constantino;  Brough, Neil;  Lachlan-Cope, Thomas;  Fleming, Zoe L.;  Foot, Virginia E.;  Stanley, Warren R.
收藏  |  浏览/下载:16/0  |  提交时间:2019/04/09
The MERRA-2 Aerosol Reanalysis, 1980 Onward. Part I: System Description and Data Assimilation Evaluation 期刊论文
JOURNAL OF CLIMATE, 2017, 30 (17)
作者:  Randles, C. A.;  da Silva, A. M.;  Buchard, V.;  Colarco, P. R.;  Darmenov, A.;  Govindaraju, R.;  Smirnov, A.;  Holben, B.;  Ferrare, R.;  Hair, J.;  Shinozuka, Y.;  Flynn, C. J.
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09