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SARS-CoV-2 productively infects human gut enterocytes 期刊论文
Science, 2020
作者:  Mart M. Lamers;  Joep Beumer;  Jelte van der Vaart;  Kèvin Knoops;  Jens Puschhof;  Tim I. Breugem;  Raimond B. G. Ravelli;  J. Paul van Schayck;  Anna Z. Mykytyn;  Hans Q. Duimel;  Elly van Donselaar;  Samra Riesebosch;  Helma J. H. Kuijpers;  Debby Schipper;  Willine J. van de Wetering;  Miranda de Graaf;  Marion Koopmans;  Edwin Cuppen;  Peter J. Peters;  Bart L. Haagmans;  Hans Clevers
收藏  |  浏览/下载:8/0  |  提交时间:2020/07/06
Video-based AI for beat-to-beat assessment of cardiac function 期刊论文
NATURE, 2020, 580 (7802) : 252-+
作者:  Pleguezuelos-Manzano, Cayetano;  Puschhof, Jens;  Huber, Axel Rosendahl;  van Hoeck, Arne;  Wood, Henry M.;  Nomburg, Jason;  Gurjao, Carino;  Manders, Freek;  Dalmasso, Guillaume;  Stege, Paul B.;  Paganelli, Fernanda L.;  Geurts, Maarten H.;  Beumer, Joep;  Mizutani, Tomohiro;  Miao, Yi;  van der Linden, Reinier;  van der Elst, Stefan;  Garcia, K. Christopher;  Top, Janetta;  Willems, Rob J. L.;  Giannakis, Marios;  Bonnet, Richard;  Quirke, Phil;  Meyerson, Matthew;  Cuppen, Edwin;  van Boxtel, Ruben;  Clevers, Hans
收藏  |  浏览/下载:116/0  |  提交时间:2020/07/03

A video-based deep learning algorithm-EchoNet-Dynamic-accurately identifies subtle changes in ejection fraction and classifies heart failure with reduced ejection fraction using information from multiple cardiac cycles.


Accurate assessment of cardiac function is crucial for the diagnosis of cardiovascular disease(1), screening for cardiotoxicity(2) and decisions regarding the clinical management of patients with a critical illness(3). However, human assessment of cardiac function focuses on a limited sampling of cardiac cycles and has considerable inter-observer variability despite years of training(4,5). Here, to overcome this challenge, we present a video-based deep learning algorithm-EchoNet-Dynamic-that surpasses the performance of human experts in the critical tasks of segmenting the left ventricle, estimating ejection fraction and assessing cardiomyopathy. Trained on echocardiogram videos, our model accurately segments the left ventricle with a Dice similarity coefficient of 0.92, predicts ejection fraction with a mean absolute error of 4.1% and reliably classifies heart failure with reduced ejection fraction (area under the curve of 0.97). In an external dataset from another healthcare system, EchoNet-Dynamic predicts the ejection fraction with a mean absolute error of 6.0% and classifies heart failure with reduced ejection fraction with an area under the curve of 0.96. Prospective evaluation with repeated human measurements confirms that the model has variance that is comparable to or less than that of human experts. By leveraging information across multiple cardiac cycles, our model can rapidly identify subtle changes in ejection fraction, is more reproducible than human evaluation and lays the foundation for precise diagnosis of cardiovascular disease in real time. As a resource to promote further innovation, we also make publicly available a large dataset of 10,030 annotated echocardiogram videos.


  
Use of CRISPR-modified human stem cell organoids to study the origin of mutational signatures in cancer 期刊论文
SCIENCE, 2017, 358 (6360) : 234-+
作者:  Drost, Jarno;  van Boxtel, Ruben;  Blokzijl, Francis;  Mizutani, Tomohiro;  Sasaki, Nobuo;  Sasselli, Valentina;  de Ligt, Joep;  Behjati, Sam;  Grolleman, Judith E.;  van Wezel, Tom;  Nik-Zainal, Serena;  Kuiper, Roland P.;  Cuppen, Edwin;  Clevers, Hans
收藏  |  浏览/下载:4/0  |  提交时间:2019/11/27