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Microbial enzymes induce colitis by reactivating triclosan in the mouse gastrointestinal tract 期刊论文
Nature Communications, 2022
作者:  Zhang, Jianan;  Walker, Morgan E.;  Sanidad, Katherine Z.;  Zhang, Hongna;  Liang, Yanshan;  Zhao, Ermin;  Chacon-Vargas, Katherine;  Yeliseyev, Vladimir;  Parsonnet, Julie;  Haggerty, Thomas D.;  Wang, Guangqiang;  Simpson, Joshua B.;  Jariwala, Parth B.;  Beaty, Violet V.;  Yang, Jun;  Yang, Haixia;  Panigrahy, Anand;  Minter, Lisa M.;  Kim, Daeyoung;  Gibbons, John G.;  Liu, LinShu;  Li, Zhengze;  Xiao, Hang;  Borlandelli, Valentina;  Overkleeft, Hermen S.;  Cloer, Erica W.;  Major, Michael B.;  Goldfarb, Dennis;  Cai, Zongwei;  Redinbo, Matthew R.;  Zhang, Guodong
收藏  |  浏览/下载:17/0  |  提交时间:2022/01/29
CATMoS: Collaborative Acute Toxicity Modeling Suite 期刊论文
Environmental Health Perspectives, 2021
作者:  Kamel Mansouri;  Agnes L. Karmaus;  Jeremy Fitzpatrick;  Grace Patlewicz;  Prachi Pradeep;  Domenico Alberga;  Nathalie Alepee;  Timothy E.H. Allen;  Dave Allen;  Vinicius M. Alves;  Carolina H. Andrade;  Tyler R. Auernhammer;  Davide Ballabio;  Shannon Bell;  Emilio Benfenati;  Sudin Bhattacharya;  Joyce V. Bastos;  Stephen Boyd;  J.B. Brown;  Stephen J. Capuzzi;  Yaroslav Chushak;  Heather Ciallella;  Alex M. Clark;  Viviana Consonni;  Pankaj R. Daga;  Sean Ekins;  Sherif Farag;  Maxim Fedorov;  Denis Fourches;  Domenico Gadaleta;  Feng Gao;  Jeffery M. Gearhart;  Garett Goh;  Jonathan M. Goodman;  Francesca Grisoni;  Christopher M. Grulke;  Thomas Hartung;  Matthew Hirn;  Pavel Karpov;  Alexandru Korotcov;  Giovanna J. Lavado;  Michael Lawless;  Xinhao Li;  Thomas Luechtefeld;  Filippo Lunghini;  Giuseppe F. Mangiatordi;  Gilles Marcou;  Dan Marsh;  Todd Martin;  Andrea Mauri;  Eugene N. Muratov;  Glenn J. Myatt;  Dac-Trung Nguyen;  Orazio Nicolotti;  Reine Note;  Paritosh Pande;  Amanda K. Parks;  Tyler Peryea;  Ahsan H. Polash;  Robert Rallo;  Alessandra Roncaglioni;  Craig Rowlands;  Patricia Ruiz;  Daniel P. Russo;  Ahmed Sayed;  Risa Sayre;  Timothy Sheils;  Charles Siegel;  Arthur C. Silva;  Anton Simeonov;  Sergey Sosnin;  Noel Southall;  Judy Strickland;  Yun Tang;  Brian Teppen;  Igor V. Tetko;  Dennis Thomas;  Valery Tkachenko;  Roberto Todeschini;  Cosimo Toma;  Ignacio Tripodi;  Daniela Trisciuzzi;  Alexander Tropsha;  Alexandre Varnek;  Kristijan Vukovic;  Zhongyu Wang;  Liguo Wang;  Katrina M. Waters;  Andrew J. Wedlake;  Sanjeeva J. Wijeyesakere;  Dan Wilson;  Zijun Xiao;  Hongbin Yang;  Gergely Zahoranszky-Kohalmi;  Alexey V. Zakharov;  Fagen F. Zhang;  Zhen Zhang;  Tongan Zhao;  Hao Zhu;  Kimberley M. Zorn;  Warren Casey;  Nicole C. Kleinstreuer
收藏  |  浏览/下载:15/0  |  提交时间:2021/05/07
COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data 期刊论文
Global Change Biology, 2020
作者:  Ben Bond‐;  Lamberty;  Danielle S. Christianson;  Avni Malhotra;  Stephanie C. Pennington;  Debjani Sihi;  Amir AghaKouchak;  Hassan Anjileli;  M. Altaf Arain;  Juan J. Armesto;  Samaneh Ashraf;  Mioko Ataka;  Dennis Baldocchi;  Thomas Andrew Black;  Nina Buchmann;  Mariah S. Carbone;  Shih‐;  Chieh Chang;  Patrick Crill;  Peter S. Curtis;  Eric A. Davidson;  Ankur R. Desai;  John E. Drake;  Tarek S. El‐;  Madany;  Michael Gavazzi;  Carolyn‐;  Monika Gö;  rres;  Christopher M. Gough;  Michael Goulden;  Jillian Gregg;  Omar Gutié;  rrez del Arroyo;  Jin‐;  Sheng He;  Takashi Hirano;  Anya Hopple;  Holly Hughes;  ;  rvi Jä;  rveoja;  Rachhpal Jassal;  Jinshi Jian;  Haiming Kan;  Jason Kaye;  Yuji Kominami;  Naishen Liang;  David Lipson;  Catriona A. Macdonald;  Kadmiel Maseyk;  Kayla Mathes;  Marguerite Mauritz;  Melanie A. Mayes;  Steve McNulty;  Guofang Miao;  Mirco Migliavacca;  Scott Miller;  Chelcy F. Miniat;  Jennifer G. Nietz;  Mats B. Nilsson;  Asko Noormets;  Hamidreza Norouzi;  Christine S. O’;  Connell;  Bruce Osborne;  Cecilio Oyonarte;  Zhuo Pang;  Matthias Peichl;  Elise Pendall;  Jorge F. Perez‐;  Quezada;  Claire L. Phillips;  Richard P. Phillips;  James W. Raich;  Alexandre A. Renchon;  Nadine K. Ruehr;  Enrique P. Sá;  nchez‐;  Cañ;  ete;  Matthew Saunders;  Kathleen E. Savage;  Marion Schrumpf;  Russell L. Scott;  Ulli Seibt;  Whendee L. Silver;  Wu Sun;  Daphne Szutu;  Kentaro Takagi;  Masahiro Takagi;  Munemasa Teramoto;  Mark G. Tjoelker;  Susan Trumbore;  Masahito Ueyama;  Rodrigo Vargas;  Ruth K. Varner;  Joseph Verfaillie;  Christoph Vogel;  Jinsong Wang;  Greg Winston;  Tana E. Wood;  Juying Wu;  Thomas Wutzler;  Jiye Zeng;  Tianshan Zha;  Quan Zhang;  Junliang Zou
收藏  |  浏览/下载:15/0  |  提交时间:2020/10/12
Cryptic evolved melts beneath monotonous basaltic shield volcanoes in the Gal谩pagos Archipelago 期刊论文
Nature Communications, 2020
作者:  Michael J. Stock;  Dennis Geist;  David A. Neave;  Matthew L. M. Gleeson;  Benjamin Bernard;  Keith A. Howard;  Iris Buisman;  John Maclennan
收藏  |  浏览/下载:7/0  |  提交时间:2020/08/09
HBO1 is required for the maintenance of leukaemia stem cells 期刊论文
NATURE, 2020, 577 (7789) : 266-+
作者:  MacPherson, Laura;  Anokye, Juliana;  Yeung, Miriam M.;  Lam, Enid Y. N.;  Chan, Yih-Chih;  Weng, Chen-Fang;  Yeh, Paul;  Knezevic, Kathy;  Butler, Miriam S.;  Hoegl, Annabelle;  Chan, Kah-Lok;  Burr, Marian L.;  Gearing, Linden J.;  Willson, Tracy;  Liu, Joy;  Choi, Jarny;  Yang, Yuqing;  Bilardi, Rebecca A.;  Falk, Hendrik;  Nghi Nguyen;  Stupple, Paul A.;  Peat, Thomas S.;  Zhang, Ming;  de Silva, Melanie;  Carrasco-Pozo, Catalina;  Avery, Vicky M.;  Khoo, Poh Sim;  Dolezal, Olan;  Dennis, Matthew L.;  Nuttall, Stewart;  Surjadi, Regina;  Newman, Janet;  Ren, Bin;  Leaver, David J.;  Sun, Yuxin;  Baell, Jonathan B.;  Dovey, Oliver;  Vassiliou, George S.;  Grebien, Florian;  Dawson, Sarah-Jane;  Street, Ian P.;  Monahan, Brendon J.;  Burns, Christopher J.;  Choudhary, Chunaram;  Blewitt, Marnie E.;  Voss, Anne K.;  Thomas, Tim;  Dawson, Mark A.
收藏  |  浏览/下载:17/0  |  提交时间:2020/07/03

Acute myeloid leukaemia (AML) is a heterogeneous disease characterized by transcriptional dysregulation that results in a block in differentiation and increased malignant self-renewal. Various epigenetic therapies aimed at reversing these hallmarks of AML have progressed into clinical trials, but most show only modest efficacy owing to an inability to effectively eradicate leukaemia stem cells (LSCs)(1). Here, to specifically identify novel dependencies in LSCs, we screened a bespoke library of small hairpin RNAs that target chromatin regulators in a unique ex vivo mouse model of LSCs. We identify the MYST acetyltransferase HBO1 (also known as KAT7 or MYST2) and several known members of the HBO1 protein complex as critical regulators of LSC maintenance. Using CRISPR domain screening and quantitative mass spectrometry, we identified the histone acetyltransferase domain of HBO1 as being essential in the acetylation of histone H3 at K14. H3 acetylated at K14 (H3K14ac) facilitates the processivity of RNA polymerase II to maintain the high expression of key genes (including Hoxa9 and Hoxa10) that help to sustain the functional properties of LSCs. To leverage this dependency therapeutically, we developed a highly potent small-molecule inhibitor of HBO1 and demonstrate its mode of activity as a competitive analogue of acetyl-CoA. Inhibition of HBO1 phenocopied our genetic data and showed efficacy in a broad range of human cell lines and primary AML cells from patients. These biological, structural and chemical insights into a therapeutic target in AML will enable the clinical translation of these findings.


  
ECOSTRESS: NASA's Next Generation Mission to Measure Evapotranspiration From the International Space Station 期刊论文
WATER RESOURCES RESEARCH, 2020, 56 (4)
作者:  Fisher, Joshua B.;  Lee, Brian;  Purdy, Adam J.;  Halverson, Gregory H.;  Dohlen, Matthew B.;  Cawse-Nicholson, Kerry;  Wang, Audrey;  Anderson, Ray G.;  Aragon, Bruno;  Arain, M. Altaf;  Baldocchi, Dennis D.;  Baker, John M.;  Barral, Helene;  Bernacchi, Carl J.;  Bernhofer, Christian;  Biraud, Sebastien C.;  Bohrer, Gil;  Brunsell, Nathaniel;  Cappelaere, Bernard;  Castro-Contreras, Saulo;  Chun, Junghwa;  Conrad, Bryan J.;  Cremonese, Edoardo;  Demarty, Jerome;  Desai, Ankur R.;  De Ligne, Anne;  Foltynova, Lenka;  Goulden, Michael L.;  Griffis, Timothy J.;  Gruenwald, Thomas;  Johnson, Mark S.;  Kang, Minseok;  Kelbe, Dave;  Kowalska, Natalia;  Lim, Jong-Hwan;  Mainassara, Ibrahim;  McCabe, Matthew F.;  Missik, Justine E. C.;  Mohanty, Binayak P.;  Moore, Caitlin E.;  Morillas, Laura;  Morrison, Ross;  Munger, J. William;  Posse, Gabriela;  Richardson, Andrew D.;  Russell, Eric S.;  Ryu, Youngryel;  Sanchez-Azofeifa, Arturo;  Schmidt, Marius;  Schwartz, Efrat;  Sharp, Iain;  Sigut, Ladislav;  Tang, Yao;  Hulley, Glynn;  Anderson, Martha;  Hain, Christopher;  French, Andrew;  Wood, Eric;  Hook, Simon
收藏  |  浏览/下载:24/0  |  提交时间:2020/07/02
ECOSTRESS  eddy covariance  evapotranspiration  latent heat flux  satellite  validation  
Signatures of self-organized criticality in an ultracold atomic gas 期刊论文
NATURE, 2020, 577 (7791) : 481-+
作者:  MacPherson, Laura;  Anokye, Juliana;  Yeung, Miriam M.;  Lam, Enid Y. N.;  Chan, Yih-Chih;  Weng, Chen-Fang;  Yeh, Paul;  Knezevic, Kathy;  Butler, Miriam S.;  Hoegl, Annabelle;  Chan, Kah-Lok;  Burr, Marian L.;  Gearing, Linden J.;  Willson, Tracy;  Liu, Joy;  Choi, Jarny;  Yang, Yuqing;  Bilardi, Rebecca A.;  Falk, Hendrik;  Nghi Nguyen;  Stupple, Paul A.;  Peat, Thomas S.;  Zhang, Ming;  De Silva, Melanie;  Carrasco-Pozo, Catalina;  Avery, Vicky M.;  Khoo, Sim;  Dolezal, Olan;  Dennis, Matthew L.;  Nuttall, Stewart;  Surjadi, Regina;  Newman, Janet;  Ren, Bin;  Leaver, David J.;  Sun, Yuxin;  Baell, Jonathan B.;  Dovey, Oliver;  Vassiliou, George S.;  Grebien, Florian;  Dawson, Sarah-Jane;  Street, Ian P.;  Monahan, Brendon J.;  Burns, Christopher J.;  Choudhary, Chunaram;  Blewitt, Marnie E.;  Voss, Anne K.;  Thomas, Tim;  Dawson, Mark A.
收藏  |  浏览/下载:24/0  |  提交时间:2020/07/03

Self-organized criticality is an elegant explanation of how complex structures emerge and persist throughout nature(1), and why such structures often exhibit similar scale-invariant properties(2-9). Although self-organized criticality is sometimes captured by simple models that feature a critical point as an attractor for the dynamics(10-15), the connection to real-world systems is exceptionally hard to test quantitatively(16-21). Here we observe three key signatures of self-organized criticality in the dynamics of a driven-dissipative gas of ultracold potassium atoms: self-organization to a stationary state that is largely independent of the initial conditions  scale-invariance of the final density characterized by a unique scaling function  and large fluctuations of the number of excited atoms (avalanches) obeying a characteristic power-law distribution. This work establishes a well-controlled platform for investigating self-organization phenomena and non-equilibrium criticality, with experimental access to the underlying microscopic details of the system.


A driven-dissipative gas of ultracold potassium atoms is used to demonstrate three key signatures of self-organized criticality, and provides a system in which the phenomenon can be experimentally tested.


  
Open-source discovery of chemical leads for next-generation chemoprotective antimalarials 期刊论文
SCIENCE, 2018, 362 (6419)
作者:  Antonova-Koch, Yevgeniya;  Meister, Stephan;  Abraham, Matthew;  Luth, Madeline R.;  Ottilie, Sabine;  Lukens, Amanda K.;  Sakata-Kato, Tomoyo;  Vanaerschot, Manu;  Owen, Edward;  Rodriguez, Juan Carlos Jado;  Maher, Steven P.;  Calla, Jaeson;  Plouffe, David;  Zhong, Yang;  Chen, Kaisheng;  Chaumeau, Victor;  Conway, Amy J.;  McNamara, Case W.;  Ibanez, Maureen;  Gagaring, Kerstin;  Neria Serrano, Fernando;  Eribez, Korina;  Taggard, Cullin McLean;  Cheung, Andrea L.;  Lincoln, Christie;  Ambachew, Biniam;  Rouillier, Melanie;  Siegel, Dionicio;  Nosten, Francois;  Kyle, Dennis E.;  Gamo, Francisco-Javier;  Zhou, Yingyao;  Llinas, Manuel;  Fidock, David A.;  Wirth, Dyann F.;  Burrows, Jeremy;  Campo, Brice;  Winzeler, Elizabeth A.
收藏  |  浏览/下载:17/0  |  提交时间:2019/11/27
Seasonal Variation in the Correlation Between Anomalies of Sea Level and Chlorophyll in the Antarctic Circumpolar Current 期刊论文
GEOPHYSICAL RESEARCH LETTERS, 2018, 45 (10) : 5011-5019
作者:  Song, Hajoon;  Long, Matthew C.;  Gaube, Peter;  Frenger, Ivy;  Marshall, John;  McGillicuddy, Dennis J., Jr.
收藏  |  浏览/下载:6/0  |  提交时间:2019/04/09
mesoscale eddy  vertical mixing  chlorophyll  Southern Ocean  iron  light  
Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq 期刊论文
SCIENCE, 2018, 360 (6386) : 331-335
作者:  Filbin, Mariella G.;  Tirosh, Itay;  Hovestadt, Volker;  Shaw, McKenzie L.;  Escalante, Leah E.;  Mathewson, Nathan D.;  Neftel, Cyril;  Frank, Nelli;  Pelton, Kristine;  Hebert, ChristineM.;  Haberler, Christine;  Yizhak, Keren;  Gojo, Johannes;  Egervari, Kristof;  Mount, Christopher;  van Galen, Peter;  Bonal, Dennis M.;  Quang-De Nguyen;  Beck, Alexander;  Sinai, Claire;  Czech, Thomas;  Dorfer, Christian;  Goumnerova, Liliana;  Lavarino, Cinzia;  Carcaboso, Angel M.;  Mora, Jaume;  Mylvaganam, Ravindra;  Luo, Christina C.;  Peyrl, Andreas;  Popovic, Mara;  Azizi, Amedeo;  Batchelor, Tracy T.;  Frosch, Matthew P.;  Martinez-Lage, Maria;  Kieran, Mark W.;  Bandopadhayay, Pratiti;  Beroukhim, Rameen;  Fritsch, Gerhard;  Getz, Gad;  Rozenblatt-Rosen, Orit;  Wucherpfennig, Kai W.;  Louis, David N.;  Monje, Michelle;  Slavc, Irene;  Ligon, Keith L.;  Golub, Todd R.;  Regev, Aviv;  Bernstein, Bradley E.;  Suva, Mario L.
收藏  |  浏览/下载:17/0  |  提交时间:2019/11/27