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A simple dynamic model explains the diversity of island birds worldwide 期刊论文
NATURE, 2020
作者:  Li, Junxue;  Wilson, C. Blake;  Cheng, Ran;  Lohmann, Mark;  Kavand, Marzieh;  Yuan, Wei;  Aldosary, Mohammed;  Agladze, Nikolay;  Wei, Peng;  Sherwin, Mark S.;  Shi, Jing
收藏  |  浏览/下载:13/0  |  提交时间:2020/07/03

Colonization, speciation and extinction are dynamic processes that influence global patterns of species richness(1-6). Island biogeography theory predicts that the contribution of these processes to the accumulation of species diversity depends on the area and isolation of the island(7,8). Notably, there has been no robust global test of this prediction for islands where speciation cannot be ignored(9), because neither the appropriate data nor the analytical tools have been available. Here we address both deficiencies to reveal, for island birds, the empirical shape of the general relationships that determine how colonization, extinction and speciation rates co-vary with the area and isolation of islands. We compiled a global molecular phylogenetic dataset of birds on islands, based on the terrestrial avifaunas of 41 oceanic archipelagos worldwide (including 596 avian taxa), and applied a new analysis method to estimate the sensitivity of island-specific rates of colonization, speciation and extinction to island features (area and isolation). Our model predicts-with high explanatory power-several global relationships. We found a decline in colonization with isolation, a decline in extinction with area and an increase in speciation with area and isolation. Combining the theoretical foundations of island biogeography(7,8) with the temporal information contained in molecular phylogenies(10) proves a powerful approach to reveal the fundamental relationships that govern variation in biodiversity across the planet.


Using a global molecular phylogenetic dataset of birds on islands, the sensitivity of island-specific rates of colonization, speciation and extinction to island features (area and isolation) is estimated.


  
Giant virus diversity and host interactions through global metagenomics 期刊论文
NATURE, 2020: 1-+
作者:  Su, Jie;  Morgani, Sophie M.;  David, Charles J.;  Wang, Qiong;  Er, Ekrem Emrah;  Huang, Yun-Han;  Basnet, Harihar;  Zou, Yilong;  Shu, Weiping;  Soni, Rajesh K.;  Hendrickson, Ronald C.;  Hadjantonakis, Anna-Katerina;  Massague, Joan
收藏  |  浏览/下载:20/0  |  提交时间:2020/07/03

Analysis of metagenomics data revealed that large and giant viruses are globally widely distributed and are associated with most major eukaryotic lineages.


Our current knowledge about nucleocytoplasmic large DNA viruses (NCLDVs) is largely derived from viral isolates that are co-cultivated with protists and algae. Here we reconstructed 2,074 NCLDV genomes from sampling sites across the globe by building on the rapidly increasing amount of publicly available metagenome data. This led to an 11-fold increase in phylogenetic diversity and a parallel 10-fold expansion in functional diversity. Analysis of 58,023 major capsid proteins from large and giant viruses using metagenomic data revealed the global distribution patterns and cosmopolitan nature of these viruses. The discovered viral genomes encoded a wide range of proteins with putative roles in photosynthesis and diverse substrate transport processes, indicating that host reprogramming is probably a common strategy in the NCLDVs. Furthermore, inferences of horizontal gene transfer connected viral lineages to diverse eukaryotic hosts. We anticipate that the global diversity of NCLDVs that we describe here will establish giant viruses-which are associated with most major eukaryotic lineages-as important players in ecosystems across Earth'  s biomes.


  
Agriculture erases climate constraints on soil nematode communities across large spatial scales 期刊论文
GLOBAL CHANGE BIOLOGY, 2019
作者:  Li, Xianping;  Zhu, Huimin;  Geisen, Stefan;  Bellard, Celine;  Hu, Feng;  Li, Huixin;  Chen, Xiaoyun;  Liu, Manqiang
收藏  |  浏览/下载:8/0  |  提交时间:2019/11/27
beta diversity  biotic homogenization  environmental gradient  functional traits  land conversion  phylogenetic diversity  soil biodiversity  soil nematodes  
Discriminating among forest communities based on taxonomic, phylogenetic and trait distances 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2019, 440: 40-47
作者:  Hao, Minhui;  Ganeshaiah, Kotiganahalli Narayanagowda;  Zhang, Chunyu;  Zhao, Xiuhai;  von Gadow, Klaus
收藏  |  浏览/下载:7/0  |  提交时间:2019/11/26
Beta diversity  Community dissimilarity  Discriminating avalanche  Taxonomic distance  Trait distance  Phylogenetic distance  
Community disassembly under global change: Evidence in favor of the stress-dominance hypothesis 期刊论文
GLOBAL CHANGE BIOLOGY, 2018, 24 (9) : 4417-4427
作者:  Kuczynski, Lucie;  Grenouillet, Gael
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
assembly rules  biological invasion  climate change  community reassembly  functional diversity  long-term change  phylogenetic diversity  stream fish community  
Colour polymorphism is associated with lower extinction risk in birds 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (8)
作者:  Ducatez, Simon;  Giraudeau, Mathieu;  Thebaud, Christophe;  Jacquin, Lisa
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
colour polymorphism  conservation status  extinction threats  genetic diversity  habitat alteration  invasive species  IUCN red list  phylogenetic generalized linear mixed model  
Landscape simplification weakens the association between terrestrial producer and consumer diversity in Europe 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (8)
作者:  Dainese, Matteo;  Isaac, Nick J. B.;  Powney, Gary D.;  Bommarco, Riccardo;  Ockinger, Erik;  Kuussaari, Mikko;  Poyry, Juha;  Benton, Tim G.;  Gabriel, Doreen;  Hodgson, Jenny A.;  Kunin, William E.;  Lindborg, Regina;  Sait, Steven M.;  Marini, Lorenzo
收藏  |  浏览/下载:11/0  |  提交时间:2019/04/09
coevolution  ecosystem resilience  functional traits  habitat loss  herbivory  host specialization  land-use change  phylogenetic diversity  plant-insect interactions  trophic associations  
A near half-century of temporal change in different facets of avian diversity 期刊论文
GLOBAL CHANGE BIOLOGY, 2017, 23 (8)
作者:  Jarzyna, Marta A.;  Jetz, Walter
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
biodiversity  birds  detectability  functional diversity  imperfect detection  occupancy modeling  phylogenetic diversity  
Patterns of species and phylogenetic diversity of Pinus tabuliformis forests in the eastern Loess Plateau, China 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2017, 394
作者:  Qin, Hao;  Dong, Gang;  Zhang, Yinbo;  Zhang, Feng;  Wang, Mengben
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09
Herbaceous plants  Phylogenetic diversity  Phylogenetic structure  Pinus tabuliformis forests  Species diversity  Woody plants  
Ignoring functional and phylogenetic features masks the edge influence on ground beetle diversity across forest-grassland gradient 期刊论文
FOREST ECOLOGY AND MANAGEMENT, 2017, 384
作者:  Magura, Tibor
收藏  |  浏览/下载:3/0  |  提交时间:2019/04/09
Edge effect  Functional diversity  Functional-phylogenetic diversity  Functional traits  Phylogenetic diversity  Phylogenetic relatedness  Rao'  s quadratic entropy