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Lineage dynamics of the endosymbiotic cell type in the soft coralXenia 期刊论文
NATURE, 2020
作者:  Lewnard, Joseph A.;  Lo, Nathan C.;  Arinaminpathy, Nimalan;  Frost, Isabel;  Laxminarayan, Ramanan
收藏  |  浏览/下载:14/0  |  提交时间:2020/07/03

Many corals harbour symbiotic dinoflagellate algae. The algae live inside coral cells in a specialized membrane compartment known as the symbiosome, which shares the photosynthetically fixed carbon with coral host cells while host cells provide inorganic carbon to the algae for photosynthesis(1). This endosymbiosis-which is critical for the maintenance of coral reef ecosystems-is increasingly threatened by environmental stressors that lead to coral bleaching (that is, the disruption of endosymbiosis), which in turn leads to coral death and the degradation of marine ecosystems(2). The molecular pathways that orchestrate the recognition, uptake and maintenance of algae in coral cells remain poorly understood. Here we report the chromosome-level genome assembly of aXeniaspecies of fast-growing soft coral(3), and use this species as a model to investigate coral-alga endosymbiosis. Single-cell RNA sequencing identified 16 cell clusters, including gastrodermal cells and cnidocytes, inXeniasp. We identified the endosymbiotic cell type, which expresses a distinct set of genes that are implicated in the recognition, phagocytosis and/or endocytosis, and maintenance of algae, as well as in the immune modulation of host coral cells. By couplingXeniasp. regeneration and single-cell RNA sequencing, we observed a dynamic lineage progression of the endosymbiotic cells. The conserved genes associated with endosymbiosis that are reported here may help to reveal common principles by which different corals take up or lose their endosymbionts.


  
Injured adult neurons regress to an embryonic transcriptional growth state 期刊论文
NATURE, 2020, 581 (7806) : 77-+
作者:  Wang, Ruicong;  Li, Hongda;  Wu, Jianfeng;  Cai, Zhi-Yu;  Li, Baizhou;  Ni, Hengxiao;  Qiu, Xingfeng;  Chen, Hui;  Liu, Wei;  Yang, Zhang-Hua;  Liu, Min;  Hu, Jin;  Liang, Yaoji;  Lan, Ping;  Han, Jiahuai;  Mo, Wei
收藏  |  浏览/下载:22/0  |  提交时间:2020/07/03

Grafts of spinal-cord-derived neural progenitor cells (NPCs) enable the robust regeneration of corticospinal axons and restore forelimb function after spinal cord injury(1)  however, the molecular mechanisms that underlie this regeneration are unknown. Here we perform translational profiling specifically of corticospinal tract (CST) motor neurons in mice, to identify their '  regenerative transcriptome'  after spinal cord injury and NPC grafting. Notably, both injury alone and injury combined with NPC grafts elicit virtually identical early transcriptomic responses in host CST neurons. However, in mice with injury alone this regenerative transcriptome is downregulated after two weeks, whereas in NPC-grafted mice this transcriptome is sustained. The regenerative transcriptome represents a reversion to an embryonic transcriptional state of the CST neuron. The huntingtin gene (Htt) is a central hub in the regeneration transcriptome  deletion of Htt significantly attenuates regeneration, which shows that Htt has a key role in neural plasticity after injury.


In mouse models of central nervous system injury, Htt is shown to be a key component of the regulatory program associated with reversion of the neuronal transcriptome to a less-mature state.


  
A calcineurin-Hoxb13 axis regulates growth mode of mammalian cardiomyocytes 期刊论文
NATURE, 2020, 582 (7811) : 271-+
作者:  Waszak, Sebastian M.;  Robinson, Giles W.;  Gudenas, Brian L.;  Smith, Kyle S.;  Forget, Antoine;  Kojic, Marija;  Garcia-Lopez, Jesus;  Hadley, Jennifer;  Hamilton, Kayla V.;  Indersie, Emilie;  Buchhalter, Ivo;  Kerssemakers, Jules;  Jaeger, Natalie;  Sharma, Tanvi;  Rausch, Tobias
收藏  |  浏览/下载:21/0  |  提交时间:2020/07/03

Hoxb13 acts as a cofactor of Meis1 in regulating cardiomyocyte maturation and cell cycle, and knockout of both proteins enables regeneration of postnatal cardiac tissue in a mouse model of heart injury.


A major factor in the progression to heart failure in humans is the inability of the adult heart to repair itself after injury. We recently demonstrated that the early postnatal mammalian heart is capable of regeneration following injury through proliferation of preexisting cardiomyocytes(1,2) and that Meis1, a three amino acid loop extension (TALE) family homeodomain transcription factor, translocates to cardiomyocyte nuclei shortly after birth and mediates postnatal cell cycle arrest(3). Here we report that Hoxb13 acts as a cofactor of Meis1 in postnatal cardiomyocytes. Cardiomyocyte-specific deletion of Hoxb13 can extend the postnatal window of cardiomyocyte proliferation and reactivate the cardiomyocyte cell cycle in the adult heart. Moreover, adult Meis1-Hoxb13 double-knockout hearts display widespread cardiomyocyte mitosis, sarcomere disassembly and improved left ventricular systolic function following myocardial infarction, as demonstrated by echocardiography and magnetic resonance imaging. Chromatin immunoprecipitation with sequencing demonstrates that Meis1 and Hoxb13 act cooperatively to regulate cardiomyocyte maturation and cell cycle. Finally, we show that the calcium-activated protein phosphatase calcineurin dephosphorylates Hoxb13 at serine-204, resulting in its nuclear localization and cell cycle arrest. These results demonstrate that Meis1 and Hoxb13 act cooperatively to regulate cardiomyocyte maturation and proliferation and provide mechanistic insights into the link between hyperplastic and hypertrophic growth of cardiomyocytes.


  
Metabolites released from apoptotic cells act as tissue messengers 期刊论文
NATURE, 2020
作者:  Chica, Daniel G.;  He, Yihui;  McCall, Kyle M.;  Chung, Duck Young;  Pak, Rahmi O.;  Trimarchi, Giancarlo;  Liu, Zhifu;  De Lurgio, Patrick M.;  Wessels, Bruce W.;  Kanatzidis, Mercouri G.
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

Caspase-dependent apoptosis accounts for approximately 90% of homeostatic cell turnover in the body(1), and regulates inflammation, cell proliferation, and tissue regeneration(2-4). How apoptotic cells mediate such diverse effects is not fully understood. Here we profiled the apoptotic metabolite secretome and determined its effects on the tissue neighbourhood. We show that apoptotic lymphocytes and macrophages release specific metabolites, while retaining their membrane integrity. A subset of these metabolites is also shared across different primary cells and cell lines after the induction of apoptosis by different stimuli. Mechanistically, the apoptotic metabolite secretome is not simply due to passive emptying of cellular contents and instead is a regulated process. Caspase-mediated opening of pannexin 1 channels at the plasma membrane facilitated the release of a select subset of metabolites. In addition, certain metabolic pathways continued to remain active during apoptosis, with the release of only select metabolites from a given pathway. Functionally, the apoptotic metabolite secretome induced specific gene programs in healthy neighbouring cells, including suppression of inflammation, cell proliferation, and wound healing. Furthermore, a cocktail of apoptotic metabolites reduced disease severity in mouse models of inflammatory arthritis and lung-graft rejection. These data advance the concept that apoptotic cells are not inert cells waiting for removal, but instead release metabolites as '  good-bye'  signals to actively modulate outcomes in tissues.


Apoptotic cells communicate with neighbouring cells by the regulated release of specific metabolites, and a cocktail of select apoptotic metabolites reduces disease severity in mouse models of inflammatory arthritis and lung transplant rejection.


  
The functional role of temperate forest understorey vegetation in a changing world 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (11) : 3625-3641
作者:  Landuyt, Dries;  De Lombaerde, Emiel;  Perring, Michael P.;  Hertzog, Lionel R.;  Ampoorter, Evy;  Maes, Sybryn L.;  De Frenne, Pieter;  Ma, Shiyu;  Proesmans, Willem;  Blondeel, Haben;  Sercu, Bram K.;  Wang, Bin;  Wasof, Safaa;  Verheyen, Kris
收藏  |  浏览/下载:11/0  |  提交时间:2019/11/27
ecosystem functioning  evapotranspiration  global change  herbaceous layer  nutrient cycling  productivity  tree regeneration  
Woody vegetation dynamics in the tropical and subtropical Andes from 2001 to 2014: Satellite image interpretation and expert validation 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (6) : 2112-2126
作者:  Mitchell Aide, T.;  Ricardo Grau, H.;  Graesser, Jordan;  Jose Andrade-Nunez, Maria;  Araoz, Ezequiel;  Barros, Ana P.;  Campos-Cerqueira, Marconi;  Chacon-Moreno, Eulogio;  Cuesta, Francisco;  Espinoza, Raul;  Peralvo, Manuel;  Polk, Molly H.;  Rueda, Ximena;  Sanchez, Adriana;  Young, Kenneth R.;  Zarba, Lucia;  Zimmerer, Karl S.
收藏  |  浏览/下载:13/0  |  提交时间:2019/11/26
agriculture  coupled natural human systems  expert validation  forest loss and regeneration  MODIS satellite imagery  
Economic impacts of a linear urban park on local businesses: The case of Gyeongui Line Forest Park in Seoul 期刊论文
LANDSCAPE AND URBAN PLANNING, 2019, 181: 139-147
作者:  Park, Juhyeon;  Kim, Jeongseob
收藏  |  浏览/下载:5/0  |  提交时间:2019/04/09
Economic impacts  Actual sales data  Revitalization  Urban regeneration  Linear parks  
Demographic costs and benefits of natural regeneration during tropical forest restoration 期刊论文
ECOLOGY LETTERS, 2019, 22 (1) : 34-44
作者:  Caughlin, T. Trevor;  de la Pena-Domene, Marines;  Martinez-Garza, Cristina
收藏  |  浏览/下载:4/0  |  提交时间:2019/04/09
Demographic model  early succession  full life-cycle analysis  individual-based model  life-history categories  natural regeneration  population-level  reforestation  successional age  tropical forest restoration  
Low-Carbon Gentrification: When Climate Change Encounters Residential Displacement 期刊论文
INTERNATIONAL JOURNAL OF URBAN AND REGIONAL RESEARCH, 2018, 42 (5) : 845-863
作者:  Bouzarovski, Stefan;  Frankowski, Jan;  Tirado Herrero, Sergio
收藏  |  浏览/下载:7/0  |  提交时间:2019/04/09
ecological gentrification  low-carbon transition  housing  urban regeneration  energy efficiency  Poland  
Density-dependent survival varies with species life-history strategy in a tropical forest 期刊论文
ECOLOGY LETTERS, 2018, 21 (4) : 506-515
作者:  Zhu, Y.;  Queenborough, S. A.;  Condit, R.;  Hubbell, S. P.;  Ma, K. P.;  Comita, L. S.
收藏  |  浏览/下载:3/0  |  提交时间:2019/04/09
fast-slow continuum  growth-mortality trade-off  intraspecific competition  Janzen-Connell hypothesis  niche partitioning  regeneration niche  shade tolerance  species coexistence