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Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility 期刊论文
Science, 2020
作者:  Wesley C. Warren;  R. Alan Harris;  Marina Haukness;  Ian T. Fiddes;  Shwetha C. Murali;  Jason Fernandes;  Philip C. Dishuck;  Jessica M. Storer;  Muthuswamy Raveendran;  LaDeana W. Hillier;  David Porubsky;  Yafei Mao;  David Gordon;  Mitchell R. Vollger;  Alexandra P. Lewis;  Katherine M. Munson;  Elizabeth DeVogelaere;  Joel Armstrong;  Mark Diekhans;  Jerilyn A. Walker;  Chad Tomlinson;  Tina A. Graves-Lindsay;  Milinn Kremitzki;  Sofie R. Salama;  Peter A. Audano;  Merly Escalona;  Nicholas W. Maurer;  Francesca Antonacci;  Ludovica Mercuri;  Flavia A. M. Maggiolini;  Claudia Rita Catacchio;  Jason G. Underwood;  David H. O’Connor;  Ashley D. Sanders;  Jan O. Korbel;  Betsy Ferguson;  H. Michael Kubisch;  Louis Picker;  Ned H. Kalin;  Douglas Rosene;  Jon Levine;  David H. Abbott;  Stanton B. Gray;  Mar M. Sanchez;  Zsofia A. Kovacs-Balint;  Joseph W. Kemnitz;  Sara M. Thomasy;  Jeffrey A. Roberts;  Erin L. Kinnally;  John P. Capitanio;  J. H. Pate Skene;  Michael Platt;  Shelley A. Cole;  Richard E. Green;  Mario Ventura;  Roger W. Wiseman;  Benedict Paten;  Mark A. Batzer;  Jeffrey Rogers;  Evan E. Eichler
收藏  |  浏览/下载:19/0  |  提交时间:2020/12/22
Extensive heterogeneity in somatic mutation and selection in the human bladder 期刊论文
Science, 2020
作者:  Andrew R. J. Lawson;  Federico Abascal;  Tim H. H. Coorens;  Yvette Hooks;  Laura O’Neill;  Calli Latimer;  Keiran Raine;  Mathijs A. Sanders;  Anne Y. Warren;  Krishnaa T. A. Mahbubani;  Bethany Bareham;  Timothy M. Butler;  Luke M. R. Harvey;  Alex Cagan;  Andrew Menzies;  Luiza Moore;  Alexandra J. Colquhoun;  William Turner;  Benjamin Thomas;  Vincent Gnanapragasam;  Nicholas Williams;  Doris M. Rassl;  Harald Vöhringer;  Sonia Zumalave;  Jyoti Nangalia;  José M. C. Tubío;  Moritz Gerstung;  Kourosh Saeb-Parsy;  Michael R. Stratton;  Peter J. Campbell;  Thomas J. Mitchell;  Iñigo Martincorena
收藏  |  浏览/下载:20/0  |  提交时间:2020/10/12
Global quieting of high-frequency seismic noise due to COVID-19 pandemic lockdown measures 期刊论文
Science, 2020
作者:  Thomas Lecocq;  Stephen P. Hicks;  Koen Van Noten;  Kasper van Wijk;  Paula Koelemeijer;  Raphael S. M. De Plaen;  Frédérick Massin;  Gregor Hillers;  Robert E. Anthony;  Maria-Theresia Apoloner;  Mario Arroyo-Solórzano;  Jelle D. Assink;  Pinar Büyükakpınar;  Andrea Cannata;  Flavio Cannavo;  Sebastian Carrasco;  Corentin Caudron;  Esteban J. Chaves;  David G. Cornwell;  David Craig;  Olivier F. C. den Ouden;  Jordi Diaz;  Stefanie Donner;  Christos P. Evangelidis;  Läslo Evers;  Benoit Fauville;  Gonzalo A. Fernandez;  Dimitrios Giannopoulos;  Steven J. Gibbons;  Társilo Girona;  Bogdan Grecu;  Marc Grunberg;  György Hetényi;  Anna Horleston;  Adolfo Inza;  Jessica C. E. Irving;  Mohammadreza Jamalreyhani;  Alan Kafka;  Mathijs R. Koymans;  Celeste R. Labedz;  Eric Larose;  Nathaniel J. Lindsey;  Mika McKinnon;  Tobias Megies;  Meghan S. Miller;  William Minarik;  Louis Moresi;  Víctor H. Márquez-Ramírez;  Martin Möllhoff;  Ian M. Nesbitt;  Shankho Niyogi;  Javier Ojeda;  Adrien Oth;  Simon Proud;  Jay Pulli;  Lise Retailleau;  Annukka E. Rintamäki;  Claudio Satriano;  Martha K. Savage;  Shahar Shani-Kadmiel;  Reinoud Sleeman;  Efthimios Sokos;  Klaus Stammler;  Alexander E. Stott;  Shiba Subedi;  Mathilde B. Sørensen;  Taka'aki Taira;  Mar Tapia;  Fatih Turhan;  Ben van der Pluijm;  Mark Vanstone;  Jerome Vergne;  Tommi A. T. Vuorinen;  Tristram Warren;  Joachim Wassermann;  Han Xiao
收藏  |  浏览/下载:17/0  |  提交时间:2020/09/14
Quantitative Flow‐Ecology Relationships Using Distributed Lag Nonlinear Models: Large Floods in the Murray River Could Have Delayed Effects on Aquatic Macroinvertebrates Lasting More Than Three Decades 期刊论文
Water Resources Research, 2020
作者:  Chi T. U. Le;  Warren L. Paul;  Ben Gawne;  Phillip J. Suter
收藏  |  浏览/下载:70/0  |  提交时间:2020/07/21
Feasibility of blood testing combined with PET-CT to screen for cancer and guide intervention 期刊论文
Science, 2020
作者:  Anne Marie Lennon;  Adam H. Buchanan;  Isaac Kinde;  Andrew Warren;  Ashley Honushefsky;  Ariella T. Cohain;  David H. Ledbetter;  Fred Sanfilippo;  Kathleen Sheridan;  Dillenia Rosica;  Christian S. Adonizio;  Hee Jung Hwang;  Kamel Lahouel;  Joshua D. Cohen;  Christopher Douville;  Aalpen A. Patel;  Leonardo N. Hagmann;  David D. Rolston;  Nirav Malani;  Shibin Zhou;  Chetan Bettegowda;  David L. Diehl;  Bobbi Urban;  Christopher D. Still;  Lisa Kann;  Julie I. Woods;  Zachary M. Salvati;  Joseph Vadakara;  Rosemary Leeming;  Prianka Bhattacharya;  Carroll Walter;  Alex Parker;  Christoph Lengauer;  Alison Klein;  Cristian Tomasetti;  Elliot K. Fishman;  Ralph H. Hruban;  Kenneth W. Kinzler;  Bert Vogelstein;  Nickolas Papadopoulos
收藏  |  浏览/下载:18/0  |  提交时间:2020/07/06
MTOR signaling orchestrates stress-induced mutagenesis, facilitating adaptive evolution in cancer 期刊论文
Science, 2020
作者:  Arcadi Cipponi;  David L. Goode;  Justin Bedo;  Mark J. McCabe;  Marina Pajic;  David R. Croucher;  Alvaro Gonzalez Rajal;  Simon R. Junankar;  Darren N. Saunders;  Pavel Lobachevsky;  Anthony T. Papenfuss;  Danielle Nessem;  Max Nobis;  Sean C. Warren;  Paul Timpson;  Mark Cowley;  Ana C. Vargas;  Min R. Qiu;  Daniele G. Generali;  Shivakumar Keerthikumar;  Uyen Nguyen;  Niall M. Corcoran;  Georgina V. Long;  Jean-Yves Blay;  David M. Thomas
收藏  |  浏览/下载:10/0  |  提交时间:2020/06/09
Premature mortality related to United States cross-state air pollution 期刊论文
NATURE, 2020, 578 (7794) : 261-+
作者:  Helmink, Beth A.;  Reddy, Sangeetha M.;  Gao, Jianjun;  Zhang, Shaojun;  Basar, Rafet;  Thakur, Rohit;  Yizhak, Keren;  Sade-Feldman, Moshe;  Blando, Jorge;  Han, Guangchun;  Gopalakrishnan, Vancheswaran;  Xi, Yuanxin;  Zhao, Hao;  Amaria, Rodabe N.;  Tawbi, Hussein A.;  Cogdill, Alex P.;  Liu, Wenbin;  LeBleu, Valerie S.;  Kugeratski, Fernanda G.;  Patel, Sapna;  Davies, Michael A.;  Hwu, Patrick;  Lee, Jeffrey E.;  Gershenwald, Jeffrey E.;  Lucci, Anthony;  Arora, Reetakshi;  Woodman, Scott;  Keung, Emily Z.;  Gaudreau, Pierre-Olivier;  Reuben, Alexandre;  Spencer, Christine N.;  Burton, Elizabeth M.;  Haydu, Lauren E.;  Lazar, Alexander J.;  Zapassodi, Roberta;  Hudgens, Courtney W.;  Ledesma, Deborah A.;  Ong, SuFey;  Bailey, Michael;  Warren, Sarah;  Rao, Disha;  Krijgsman, Oscar;  Rozeman, Elisa A.;  Peeper, Daniel;  Blank, Christian U.;  Schumacher, Ton N.;  Butterfield, Lisa H.;  Zelazowska, Monika A.;  McBride, Kevin M.;  Kalluri, Raghu;  Allison, James;  Petitprez, Florent;  Fridman, Wolf Herman;  Sautes-Fridman, Catherine;  Hacohen, Nir;  Rezvani, Katayoun;  Sharma, Padmanee;  Tetzlaff, Michael T.;  Wang, Linghua;  Wargo, Jennifer A.
收藏  |  浏览/下载:37/0  |  提交时间:2020/05/13

Outdoor air pollution adversely affects human health and is estimated to be responsible for five to ten per cent of the total annual premature mortality in the contiguous United States(1-3). Combustion emissions from a variety of sources, such as power generation or road traffic, make a large contribution to harmful air pollutants such as ozone and fine particulate matter (PM2.5)(4). Efforts to mitigate air pollution have focused mainly on the relationship between local emission sources and local air quality(2). Air quality can also be affected by distant emission sources, however, including emissions from neighbouring federal states(5,6). This cross-state exchange of pollution poses additional regulatory challenges. Here we quantify the exchange of air pollution among the contiguous United States, and assess its impact on premature mortality that is linked to increased human exposure to PM2.5 and ozone from seven emission sectors for 2005 to 2018. On average, we find that 41 to 53 per cent of air-quality-related premature mortality resulting from a state'  s emissions occurs outside that state. We also find variations in the cross-state contributions of different emission sectors and chemical species to premature mortality, and changes in these variations over time. Emissions from electric power generation have the greatest cross-state impacts as a fraction of their total impacts, whereas commercial/residential emissions have the smallest. However, reductions in emissions from electric power generation since 2005 have meant that, by 2018, cross-state premature mortality associated with the commercial/residential sector was twice that associated with power generation. In terms of the chemical species emitted, nitrogen oxides and sulfur dioxide emissions caused the most cross-state premature deaths in 2005, but by 2018 primary PM2.5 emissions led to cross-state premature deaths equal to three times those associated with sulfur dioxide emissions. These reported shifts in emission sectors and emission species that contribute to premature mortality may help to guide improvements to air quality in the contiguous United States.


  
Mechanical regulation of glycolysis via cytoskeleton architecture 期刊论文
NATURE, 2020, 578 (7796) : 621-+
作者:  Faivre, Emily J.;  McDaniel, Keith F.;  Albert, Daniel H.;  Mantena, Srinivasa R.;  Plotnik, Joshua P.;  Wilcox, Denise;  Zhang, Lu;  Bui, Mai H.;  Sheppard, George S.;  Wang, Le;  Sehgal, Vasudha;  Lin, Xiaoyu;  Huang, Xiaoli;  Lu, Xin;  Uziel, Tamar;  Hessler, Paul;  Lam, Lloyd T.;  Bellin, Richard J.;  Mehta, Gaurav;  Fidanze, Steve;  Pratt, John K.;  Liu, Dachun;  Hasvold, Lisa A.;  Sun, Chaohong;  Panchal, Sanjay C.;  Nicolette, John J.;  Fossey, Stacey L.;  Park, Chang H.;  Longenecker, Kenton;  Bigelow, Lance;  Torrent, Maricel;  Rosenberg, Saul H.;  Kati, Warren M.;  Shen, Yu
收藏  |  浏览/下载:15/0  |  提交时间:2020/07/03

The mechanics of the cellular microenvironment continuously modulates cell functions such as growth, survival, apoptosis, differentiation and morphogenesis via cytoskeletal remodelling and actomyosin contractility(1-3). Although all of these processes consume energy(4,5), it is unknown whether and how cells adapt their metabolic activity to variable mechanical cues. Here we report that the transfer of human bronchial epithelial cells from stiff to soft substrates causes a downregulation of glycolysis via proteasomal degradation of the rate-limiting metabolic enzyme phosphofructokinase (PFK). PFK degradation is triggered by the disassembly of stress fibres, which releases the PFK-targeting E3 ubiquitin ligase tripartite motif (TRIM)-containing protein 21 (TRIM21). Transformed non-small-cell lung cancer cells, which maintain high glycolytic rates regardless of changing environmental mechanics, retain PFK expression by downregulating TRIM21, and by sequestering residual TRIM21 on a stress-fibre subset that is insensitive to substrate stiffness. Our data reveal a mechanism by which glycolysis responds to architectural features of the actomyosin cytoskeleton, thus coupling cell metabolism to the mechanical properties of the surrounding tissue. These processes enable normal cells to tune energy production in variable microenvironments, whereas the resistance of the cytoskeleton in response to mechanical cues enables the persistence of high glycolytic rates in cancer cells despite constant alterations of the tumour tissue.


Glycolysis in normal epithelial cells responds to microenvironmental mechanics via the modulation of actin bundles that sequester the phosphofructokinase-targeting ubiquitin ligase TRIM21, a process superseded by persistent actin bundles in cancer cells.


  
The human imperative of stabilizing global climate change at 1.5 degrees C 期刊论文
SCIENCE, 2019, 365 (6459) : 1263-+
作者:  Hoegh-Guldberg, O.;  Jacob, D.;  Taylor, M.;  Bolanos, T. Guillen;  Bindi, M.;  Brown, S.;  Camilloni, I. A.;  Diedhiou, A.;  Djalante, R.;  Ebi, K.;  Engelbrecht, F.;  Guiot, J.;  Hijioka, Y.;  Mehrotra, S.;  Hope, C. W.;  Payne, A. J.;  Poertner, H. -O.;  Seneviratne, S. I.;  Thomas, A.;  Warren, R.;  Zhou, G.
收藏  |  浏览/下载:10/0  |  提交时间:2019/11/27
Divergent long-term trends and interannual variation in ecosystem resource use efficiencies of a southern boreal old black spruce forest 1999-2017 期刊论文
GLOBAL CHANGE BIOLOGY, 2019, 25 (9) : 3056-3069
作者:  Liu, Peng;  Black, T. Andrew;  Jassal, Rachhpal S.;  Zha, Tianshan;  Nesic, Zoran;  Barr, Alan G.;  Helgason, Warren D.;  Jia, Xin;  Tian, Yun;  Stephens, Jilmarie J.;  Ma, Jingyong
收藏  |  浏览/下载:6/0  |  提交时间:2019/11/27
carbon use efficiency  climate change  gross ecosystem productivity  light use efficiency  long-term trends  Old Black Spruce  southern boreal forest  water use efficiency